Wall clock time and date at job start Mon Mar 30 2020 00:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46904 * 109.46698 * 2 1 4 4 C 1.48001 * 110.99959 * 69.87542 * 3 2 1 5 5 C 1.54286 * 107.02547 * 145.58699 * 4 3 2 6 6 C 1.53306 * 104.79893 * 358.00752 * 5 4 3 7 7 C 1.53351 * 111.50737 * 218.99242 * 6 5 4 8 8 C 1.54767 * 101.44000 * 214.26051 * 7 6 5 9 9 N 1.46911 * 105.53199 * 24.30011 * 8 7 6 10 10 C 1.46500 * 124.37745 * 163.17721 * 9 8 7 11 11 C 1.52997 * 109.46791 * 90.00096 * 10 9 8 12 12 C 1.50708 * 109.46879 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99579 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99909 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00105 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47031 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47461 * 120.00229 * 16 14 12 19 19 H 1.48503 * 109.46996 * 240.00515 * 16 14 12 20 20 C 1.34835 * 111.24647 * 343.22652 * 9 8 7 21 21 O 1.21288 * 125.19049 * 181.19273 * 20 9 8 22 22 C 1.48774 * 110.99212 * 187.50346 * 3 2 1 23 23 H 1.09004 * 109.47307 * 299.99989 * 1 2 3 24 24 H 1.08997 * 109.47165 * 60.00045 * 1 2 3 25 25 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46788 * 239.99673 * 2 1 3 27 27 H 1.09001 * 109.46849 * 119.99568 * 2 1 3 28 28 H 1.09003 * 109.92771 * 26.24694 * 4 3 2 29 29 H 1.08998 * 110.09464 * 265.02159 * 4 3 2 30 30 H 1.09008 * 110.37494 * 116.83797 * 5 4 3 31 31 H 1.09004 * 110.37196 * 239.17564 * 5 4 3 32 32 H 1.09003 * 111.03385 * 332.29789 * 7 6 5 33 33 H 1.09000 * 111.03443 * 96.22366 * 7 6 5 34 34 H 1.08998 * 110.23322 * 143.31609 * 8 7 6 35 35 H 1.08997 * 110.23700 * 265.20049 * 8 7 6 36 36 H 1.08999 * 109.46627 * 210.00209 * 10 9 8 37 37 H 1.09001 * 109.47012 * 330.00244 * 10 9 8 38 38 H 1.08993 * 109.47228 * 299.99666 * 11 10 9 39 39 H 1.09001 * 109.47222 * 60.00276 * 11 10 9 40 40 H 0.96997 * 119.99594 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.68650 * 319.99100 * 22 3 2 42 42 H 1.08999 * 110.68324 * 83.17177 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.7482 2.0436 1.2974 5 6 2.9236 3.0049 1.5707 6 6 3.8768 2.8045 0.3868 7 6 5.3432 2.8355 0.8343 8 6 6.0229 3.4999 -0.3871 9 7 4.9678 4.2790 -1.0490 10 6 5.2140 5.3404 -2.0282 11 6 5.2507 4.7386 -3.4343 12 6 5.5033 5.8306 -4.4417 13 1 5.6259 6.8517 -4.1118 14 6 5.5791 5.5260 -5.7842 15 7 5.4303 4.2825 -6.1858 16 14 5.8929 6.8795 -7.0328 17 1 6.0225 8.1812 -6.3297 18 1 7.1471 6.5891 -7.7730 19 1 4.7579 6.9444 -7.9882 20 6 3.7435 3.8914 -0.6379 21 8 2.6943 4.3512 -1.0365 22 6 3.4957 1.4286 -0.1814 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6884 1.2958 2.0882 29 1 0.8147 2.6038 1.2449 30 1 2.5709 4.0358 1.6036 31 1 3.4190 2.7424 2.5055 32 1 5.4663 3.4447 1.7298 33 1 5.7250 1.8271 0.9938 34 1 6.8277 4.1577 -0.0591 35 1 6.4112 2.7382 -1.0631 36 1 4.4157 6.0803 -1.9703 37 1 6.1693 5.8190 -1.8127 38 1 6.0490 3.9987 -3.4921 39 1 4.2953 4.2600 -3.6497 40 1 5.4832 4.0683 -7.1303 41 1 3.9769 0.6314 0.3851 42 1 3.7558 1.3629 -1.2378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272437196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:21 Heat of formation + Delta-G solvation = -34.163078 kcal Electronic energy + Delta-G solvation = -21034.760443 eV Core-core repulsion = 18014.294003 eV Total energy + Delta-G solvation = -3020.466440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84151 -37.97462 -35.87556 -34.30673 -32.93836 -31.23269 -29.31283 -28.93915 -27.56502 -25.03991 -23.70786 -22.83990 -21.82969 -20.85631 -20.02639 -18.49402 -16.59495 -16.21105 -15.75654 -15.51342 -15.30935 -14.66054 -14.34409 -14.27893 -13.71845 -13.52225 -12.91843 -12.86568 -12.68375 -12.56760 -12.32141 -12.28626 -11.87337 -11.61732 -11.43786 -11.35332 -11.24191 -10.94830 -10.92262 -10.73760 -10.67873 -10.59618 -9.94025 -9.80920 -9.25141 -8.97047 -8.34873 -8.34054 -7.92073 -5.98917 -4.02187 3.11940 3.32936 3.40051 3.43998 3.62852 3.89014 4.42411 4.46654 4.48696 4.57806 4.86325 4.98339 5.10706 5.14785 5.19480 5.35257 5.37353 5.44018 5.49351 5.56713 5.62149 5.71098 5.73762 5.77866 5.84989 5.90860 5.97611 6.06625 6.09901 6.17405 6.20955 6.51517 6.86313 6.87166 7.07156 7.10938 7.58321 7.72542 7.92211 8.02111 8.38215 8.82390 9.05179 9.61757 11.12612 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.004608 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.554912 B = 6075.138626 C = 6649.964506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.510 5.510 4 C 0.043 3.957 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.121 4.121 8 C 0.103 3.897 9 N -0.617 5.617 10 C 0.130 3.870 11 C 0.011 3.989 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.531 3.469 21 O -0.513 6.513 22 C 0.062 3.938 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.016 0.984 39 H 0.021 0.979 40 H 0.260 0.740 41 H 0.054 0.946 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -8.489 18.127 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.234 5.234 4 C -0.084 4.084 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.160 4.160 8 C -0.021 4.021 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.027 4.027 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.317 3.683 21 O -0.387 6.387 22 C -0.066 4.066 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.796 -8.014 17.262 19.236 hybrid contribution 0.723 0.132 -0.230 0.770 sum -2.073 -7.882 17.032 18.881 Atomic orbital electron populations 1.21741 0.94762 1.01179 1.02716 1.22249 0.96505 0.89203 1.00588 1.64806 1.11934 1.15527 1.31100 1.22879 0.99299 0.96465 0.89804 1.22195 0.95069 1.01177 0.96104 1.21410 0.96251 0.96408 0.96517 1.22567 0.93165 1.02087 0.98140 1.22051 0.91130 0.95520 0.93398 1.48663 1.06225 1.37241 1.42914 1.21765 1.00289 0.87808 0.89165 1.19412 0.97773 0.96555 0.88937 1.21140 1.49263 0.94094 0.91488 0.92462 1.24999 0.95239 0.95452 0.98575 1.69989 1.50044 1.17661 1.15484 0.86508 0.77766 0.82171 0.81385 1.19664 1.21021 1.20953 1.19899 0.83727 0.82601 0.82072 1.90701 1.29872 1.58632 1.59535 1.22938 0.88219 0.93515 1.01949 0.92901 0.91572 0.92561 0.90722 0.95036 0.94003 0.90193 0.90345 0.90778 0.89939 0.89475 0.90710 0.91179 0.91262 0.91802 0.96549 0.96012 0.93027 0.92832 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.97 37.16 0.37 -1.14 16 2 C 0.04 0.48 5.47 -3.82 -0.02 0.46 16 3 N -0.51 -7.12 5.27 -230.79 -1.22 -8.34 16 4 C 0.04 0.52 5.82 -2.54 -0.01 0.51 16 5 C -0.11 -1.28 5.98 -25.90 -0.15 -1.43 16 6 C -0.10 -1.40 0.73 -155.33 -0.11 -1.52 16 7 C -0.12 -1.28 6.17 -25.62 -0.16 -1.44 16 8 C 0.10 1.39 7.37 -2.89 -0.02 1.37 16 9 N -0.62 -11.50 2.95 -172.55 -0.51 -12.00 16 10 C 0.13 2.82 5.88 -4.04 -0.02 2.80 16 11 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.53 10.23 6.69 -11.31 -0.08 10.15 16 21 O -0.51 -12.15 17.47 5.55 0.10 -12.05 16 22 C 0.06 0.83 5.49 -2.44 -0.01 0.82 16 23 H 0.05 0.52 7.52 -51.93 -0.39 0.13 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 27 H 0.03 0.31 7.82 -51.93 -0.41 -0.10 16 28 H 0.04 0.42 7.57 -51.93 -0.39 0.02 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.04 7.82 -51.92 -0.41 0.64 16 31 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 32 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 33 H 0.09 0.72 7.64 -51.93 -0.40 0.32 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.59 7.95 -51.93 -0.41 1.18 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.05 0.58 7.64 -51.93 -0.40 0.18 16 42 H 0.09 1.39 8.01 -51.93 -0.42 0.97 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -34.36 336.23 -9.01 -43.37 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.38 Total: -3.32 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.78 Total: -2.99 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.99 Total: -47.07 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.36 -9.01 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272437196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.209 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds