Wall clock time and date at job start Mon Mar 30 2020 00:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46904 * 109.46698 * 2 1 4 4 C 1.48001 * 110.99959 * 69.87542 * 3 2 1 5 5 C 1.54286 * 107.02547 * 145.58699 * 4 3 2 6 6 C 1.53306 * 104.79893 * 358.00752 * 5 4 3 7 7 C 1.53351 * 111.50737 * 218.99242 * 6 5 4 8 8 C 1.54767 * 101.44000 * 214.26051 * 7 6 5 9 9 N 1.46911 * 105.53199 * 24.30011 * 8 7 6 10 10 C 1.46500 * 124.37745 * 163.17721 * 9 8 7 11 11 C 1.52997 * 109.46791 * 90.00096 * 10 9 8 12 12 C 1.50708 * 109.46879 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99579 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99909 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00105 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47031 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47461 * 120.00229 * 16 14 12 19 19 H 1.48503 * 109.46996 * 240.00515 * 16 14 12 20 20 C 1.34835 * 111.24647 * 343.22652 * 9 8 7 21 21 O 1.21288 * 125.19049 * 181.19273 * 20 9 8 22 22 C 1.48774 * 110.99212 * 187.50346 * 3 2 1 23 23 H 1.09004 * 109.47307 * 299.99989 * 1 2 3 24 24 H 1.08997 * 109.47165 * 60.00045 * 1 2 3 25 25 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46788 * 239.99673 * 2 1 3 27 27 H 1.09001 * 109.46849 * 119.99568 * 2 1 3 28 28 H 1.09003 * 109.92771 * 26.24694 * 4 3 2 29 29 H 1.08998 * 110.09464 * 265.02159 * 4 3 2 30 30 H 1.09008 * 110.37494 * 116.83797 * 5 4 3 31 31 H 1.09004 * 110.37196 * 239.17564 * 5 4 3 32 32 H 1.09003 * 111.03385 * 332.29789 * 7 6 5 33 33 H 1.09000 * 111.03443 * 96.22366 * 7 6 5 34 34 H 1.08998 * 110.23322 * 143.31609 * 8 7 6 35 35 H 1.08997 * 110.23700 * 265.20049 * 8 7 6 36 36 H 1.08999 * 109.46627 * 210.00209 * 10 9 8 37 37 H 1.09001 * 109.47012 * 330.00244 * 10 9 8 38 38 H 1.08993 * 109.47228 * 299.99666 * 11 10 9 39 39 H 1.09001 * 109.47222 * 60.00276 * 11 10 9 40 40 H 0.96997 * 119.99594 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.68650 * 319.99100 * 22 3 2 42 42 H 1.08999 * 110.68324 * 83.17177 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.7482 2.0436 1.2974 5 6 2.9236 3.0049 1.5707 6 6 3.8768 2.8045 0.3868 7 6 5.3432 2.8355 0.8343 8 6 6.0229 3.4999 -0.3871 9 7 4.9678 4.2790 -1.0490 10 6 5.2140 5.3404 -2.0282 11 6 5.2507 4.7386 -3.4343 12 6 5.5033 5.8306 -4.4417 13 1 5.6259 6.8517 -4.1118 14 6 5.5791 5.5260 -5.7842 15 7 5.4303 4.2825 -6.1858 16 14 5.8929 6.8795 -7.0328 17 1 6.0225 8.1812 -6.3297 18 1 7.1471 6.5891 -7.7730 19 1 4.7579 6.9444 -7.9882 20 6 3.7435 3.8914 -0.6379 21 8 2.6943 4.3512 -1.0365 22 6 3.4957 1.4286 -0.1814 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6884 1.2958 2.0882 29 1 0.8147 2.6038 1.2449 30 1 2.5709 4.0358 1.6036 31 1 3.4190 2.7424 2.5055 32 1 5.4663 3.4447 1.7298 33 1 5.7250 1.8271 0.9938 34 1 6.8277 4.1577 -0.0591 35 1 6.4112 2.7382 -1.0631 36 1 4.4157 6.0803 -1.9703 37 1 6.1693 5.8190 -1.8127 38 1 6.0490 3.9987 -3.4921 39 1 4.2953 4.2600 -3.6497 40 1 5.4832 4.0683 -7.1303 41 1 3.9769 0.6314 0.3851 42 1 3.7558 1.3629 -1.2378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272437196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:21 Heat of formation + Delta-G solvation = -58.622630 kcal Electronic energy + Delta-G solvation = -21035.821089 eV Core-core repulsion = 18014.294003 eV Total energy + Delta-G solvation = -3021.527086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06651 -39.15666 -37.40284 -35.92716 -34.63397 -32.71139 -30.55169 -30.24448 -28.68852 -26.98377 -24.80650 -23.95216 -23.44589 -22.00268 -21.28731 -19.85860 -18.68642 -17.45935 -17.06826 -16.79425 -16.53411 -16.46120 -15.79240 -15.22585 -15.05207 -14.72383 -14.48888 -14.34708 -13.94124 -13.91905 -13.61112 -13.58917 -13.12962 -12.98595 -12.87904 -12.56661 -12.47361 -12.40824 -12.28049 -12.01278 -11.91884 -11.81026 -11.64743 -11.55384 -11.38866 -10.63531 -10.51744 -9.51815 -9.26961 -8.25138 -6.38524 1.37513 1.39661 1.52767 1.65706 2.18383 2.41214 2.96241 3.08323 3.34899 3.45324 3.59586 3.90933 4.08489 4.18813 4.24439 4.26781 4.34207 4.39878 4.52280 4.59716 4.63163 4.65289 4.71445 4.75183 4.84061 4.86189 4.91501 4.97970 5.02117 5.05718 5.16543 5.23243 5.33285 5.33913 5.45452 5.61072 5.82936 5.94800 6.14633 6.18906 6.35653 6.77445 7.30482 7.33440 8.87513 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.004608 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.554912 B = 6075.138626 C = 6649.964506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.550 5.550 4 C 0.045 3.955 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.101 4.101 8 C 0.091 3.909 9 N -0.625 5.625 10 C 0.143 3.857 11 C 0.024 3.976 12 C -0.545 4.545 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.972 3.028 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.282 1.282 20 C 0.513 3.487 21 O -0.575 6.575 22 C 0.065 3.935 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.000 1.000 39 H -0.032 1.032 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -8.937 20.535 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 N -0.275 5.275 4 C -0.083 4.083 5 C -0.140 4.140 6 C -0.101 4.101 7 C -0.139 4.139 8 C -0.031 4.031 9 N -0.358 5.358 10 C 0.021 3.979 11 C -0.014 4.014 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.208 1.208 20 C 0.302 3.698 21 O -0.454 6.454 22 C -0.063 4.063 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.018 0.982 39 H -0.013 1.013 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.078 -8.482 19.709 21.484 hybrid contribution 0.161 0.233 -1.029 1.067 sum -0.917 -8.250 18.680 20.441 Atomic orbital electron populations 1.21723 0.94474 1.02223 1.01659 1.22290 0.96745 0.88082 1.01368 1.64704 1.12453 1.17430 1.32900 1.22868 0.98615 0.96981 0.89808 1.22250 0.94742 1.00053 0.96928 1.21420 0.99308 0.94014 0.95404 1.22666 0.89616 1.04382 0.97237 1.22437 0.90687 0.95560 0.94402 1.48811 1.07960 1.36851 1.42134 1.21323 1.00880 0.88267 0.87387 1.19206 0.94041 0.95796 0.92315 1.21594 1.49391 0.94891 0.92469 0.91471 1.26050 0.94585 0.98171 1.01019 1.70135 1.50851 1.20183 1.16247 0.85295 0.77878 0.79056 0.78176 1.18145 1.19691 1.20783 1.21051 0.82873 0.83210 0.82666 1.90646 1.32008 1.60856 1.61847 1.22900 0.88578 0.94471 1.00332 0.92396 0.94183 0.90422 0.91559 0.92410 0.90882 0.92112 0.92479 0.86338 0.87097 0.85785 0.88171 0.91712 0.93279 0.89019 0.98213 1.01341 0.92687 0.88808 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.97 71.98 0.72 -2.14 16 2 C 0.04 0.91 5.47 86.30 0.47 1.38 16 3 N -0.55 -15.16 5.27 -884.07 -4.66 -19.81 16 4 C 0.04 1.01 5.82 86.53 0.50 1.51 16 5 C -0.10 -2.17 5.98 31.13 0.19 -1.98 16 6 C -0.10 -2.53 0.73 -52.71 -0.04 -2.57 16 7 C -0.10 -1.72 6.17 31.31 0.19 -1.52 16 8 C 0.09 2.29 7.37 86.90 0.64 2.93 16 9 N -0.62 -23.71 2.95 -818.18 -2.41 -26.12 16 10 C 0.14 6.45 5.88 86.38 0.51 6.96 16 11 C 0.02 1.39 5.30 29.85 0.16 1.55 16 12 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 13 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 15 N -0.93 -59.34 13.29 21.45 0.28 -59.05 16 16 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 C 0.51 20.46 6.69 87.42 0.58 21.04 16 21 O -0.57 -29.20 17.47 -3.05 -0.05 -29.25 16 22 C 0.07 1.68 5.49 86.16 0.47 2.16 16 23 H 0.06 1.08 7.52 -2.39 -0.02 1.06 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 27 H 0.06 0.93 7.82 -2.39 -0.02 0.91 16 28 H 0.07 1.18 7.57 -2.39 -0.02 1.16 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.48 7.82 -2.38 -0.02 1.46 16 31 H 0.12 1.50 7.82 -2.38 -0.02 1.48 16 32 H 0.11 1.34 7.90 -2.39 -0.02 1.32 16 33 H 0.12 1.29 7.64 -2.39 -0.02 1.27 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 2.38 7.95 -2.39 -0.02 2.36 16 37 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 38 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H -0.03 -2.12 8.14 -2.39 -0.02 -2.14 16 40 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.09 1.65 7.64 -2.39 -0.02 1.64 16 42 H 0.05 1.65 8.01 -2.39 -0.02 1.63 16 Total: -1.00 -81.68 336.23 1.25 -80.43 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.97 Total: 8.60 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.09 Total: -2.39 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -6.78 Total: -104.98 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.25 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -81.68 1.25 -80.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272437196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.805 kcal (2) G-P(sol) polarization free energy of solvation -81.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds