Wall clock time and date at job start Mon Mar 30 2020 00:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.46988 * 2 1 4 4 C 1.48011 * 111.00281 * 174.76918 * 3 2 1 5 5 C 1.54291 * 107.03086 * 214.40092 * 4 3 2 6 6 C 1.53318 * 104.79052 * 1.99904 * 5 4 3 7 7 C 1.53352 * 111.49732 * 141.00948 * 6 5 4 8 8 C 1.54765 * 101.44000 * 98.54131 * 7 6 5 9 9 N 1.46911 * 105.53743 * 24.28434 * 8 7 6 10 10 C 1.46500 * 124.37579 * 163.22974 * 9 8 7 11 11 C 1.52994 * 109.47073 * 90.00281 * 10 9 8 12 12 C 1.50708 * 109.46806 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00084 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99716 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99811 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46727 * 90.00605 * 16 14 12 18 18 H 1.48505 * 109.47406 * 210.00379 * 16 14 12 19 19 H 1.48495 * 109.47663 * 330.00374 * 16 14 12 20 20 C 1.34833 * 111.24677 * 343.23040 * 9 8 7 21 21 O 1.21281 * 125.18604 * 181.18279 * 20 9 8 22 22 C 1.48777 * 111.00250 * 57.14369 * 3 2 1 23 23 H 1.08992 * 109.47759 * 293.98494 * 1 2 3 24 24 H 1.08998 * 109.47546 * 53.99078 * 1 2 3 25 25 H 1.09006 * 109.46728 * 173.98915 * 1 2 3 26 26 H 1.08998 * 109.47490 * 239.99667 * 2 1 3 27 27 H 1.09003 * 109.47204 * 120.00061 * 2 1 3 28 28 H 1.09005 * 109.92171 * 333.74673 * 4 3 2 29 29 H 1.09004 * 109.92317 * 94.85197 * 4 3 2 30 30 H 1.08998 * 110.36947 * 120.82325 * 5 4 3 31 31 H 1.09000 * 110.37425 * 243.05725 * 5 4 3 32 32 H 1.09002 * 111.02714 * 216.57470 * 7 6 5 33 33 H 1.08992 * 111.03439 * 340.45730 * 7 6 5 34 34 H 1.09003 * 110.23714 * 143.30434 * 8 7 6 35 35 H 1.09001 * 110.23150 * 265.27006 * 8 7 6 36 36 H 1.09004 * 109.46993 * 210.00607 * 10 9 8 37 37 H 1.09002 * 109.46894 * 330.00072 * 10 9 8 38 38 H 1.09001 * 109.46909 * 299.99541 * 11 10 9 39 39 H 1.08992 * 109.47414 * 59.99945 * 11 10 9 40 40 H 0.97000 * 119.99347 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.68282 * 276.83367 * 22 3 2 42 42 H 1.09002 * 110.68567 * 40.00975 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4937 1.4265 0.1260 5 6 3.8413 2.6807 0.9547 6 6 2.4856 3.2964 1.3202 7 6 2.4857 3.8460 2.7519 8 6 2.7383 5.3524 2.5023 9 7 2.2710 5.6082 1.1332 10 6 1.9881 6.9395 0.5910 11 6 3.2570 7.5116 -0.0441 12 6 2.9661 8.8813 -0.6014 13 1 1.9752 9.3015 -0.5119 14 6 3.9650 9.5981 -1.2255 15 7 5.1715 9.0862 -1.3349 16 14 3.6042 11.2955 -1.9168 17 1 3.8627 12.3201 -0.8733 18 1 4.4811 11.5497 -3.0880 19 1 2.1822 11.3663 -2.3386 20 6 2.1362 4.4595 0.4402 21 8 1.7861 4.3791 -0.7182 22 6 1.4869 2.1389 1.1667 23 1 -0.3634 0.4177 0.9388 24 1 -0.3634 0.6042 -0.8313 25 1 -0.3633 -1.0221 -0.1076 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8480 0.5323 0.6391 29 1 3.9493 1.4925 -0.8621 30 1 4.3864 2.4007 1.8561 31 1 4.4287 3.3788 0.3583 32 1 1.5206 3.6856 3.2324 33 1 3.2910 3.4058 3.3398 34 1 2.1701 5.9527 3.2130 35 1 3.8020 5.5750 2.5854 36 1 1.2054 6.8654 -0.1641 37 1 1.6563 7.5963 1.3951 38 1 4.0396 7.5857 0.7110 39 1 3.5888 6.8548 -0.8482 40 1 5.8741 9.5904 -1.7743 41 1 0.4871 2.5185 0.9559 42 1 1.4820 1.5135 2.0596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272437198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:24 Heat of formation + Delta-G solvation = -33.423684 kcal Electronic energy + Delta-G solvation = -21037.697418 eV Core-core repulsion = 18017.263041 eV Total energy + Delta-G solvation = -3020.434377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84341 -38.00013 -35.87158 -34.28256 -32.94204 -31.40806 -29.24006 -28.59439 -27.84233 -25.15860 -23.98288 -22.34506 -21.85135 -20.78017 -20.25084 -18.48503 -16.62640 -16.29176 -15.83975 -15.22469 -15.16323 -14.94792 -14.43456 -14.06382 -13.88447 -13.51493 -13.18345 -12.68035 -12.62016 -12.48810 -12.39030 -12.21189 -11.96240 -11.75200 -11.48544 -11.26888 -11.12443 -10.99312 -10.92870 -10.81008 -10.69107 -10.59622 -9.93784 -9.81150 -9.26128 -8.95486 -8.34781 -8.34367 -7.91531 -5.99557 -4.02797 3.13469 3.33152 3.39359 3.43181 3.63196 3.87583 4.40442 4.47724 4.50738 4.56191 4.84517 5.01091 5.04042 5.16207 5.17151 5.35223 5.36685 5.37846 5.43437 5.54743 5.61799 5.70403 5.73676 5.77782 5.83052 5.90285 5.95380 6.06203 6.08859 6.14545 6.21533 6.51767 6.85342 6.86506 7.05178 7.11389 7.58081 7.71636 7.91941 8.01247 8.37634 8.83658 9.04349 9.61075 11.11938 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.004237 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.095608 B = 6607.421188 C = 6772.046763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 N -0.507 5.507 4 C 0.041 3.959 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.122 4.122 8 C 0.104 3.896 9 N -0.617 5.617 10 C 0.130 3.870 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.529 3.471 21 O -0.509 6.509 22 C 0.065 3.935 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.016 0.984 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.084 0.916 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -17.125 10.475 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 N -0.231 5.231 4 C -0.087 4.087 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.160 4.160 8 C -0.020 4.020 9 N -0.351 5.351 10 C 0.010 3.990 11 C -0.026 4.026 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.314 3.686 21 O -0.383 6.383 22 C -0.063 4.063 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.257 -16.824 9.237 19.900 hybrid contribution 0.326 0.644 0.428 0.839 sum -4.932 -16.179 9.665 19.481 Atomic orbital electron populations 1.21810 0.94884 1.01606 1.02577 1.22253 0.96196 0.89531 1.00505 1.64869 1.05814 1.12166 1.40238 1.22906 0.88701 0.96540 1.00576 1.22205 0.95092 0.96959 1.00299 1.21435 0.97478 0.95679 0.96078 1.22566 1.03172 0.95385 0.94856 1.22039 1.00323 0.95288 0.84350 1.48676 1.66108 1.07564 1.12774 1.21762 1.00764 0.79034 0.97478 1.19405 0.91692 0.95586 0.95949 1.21104 0.96532 1.01095 1.37323 0.92502 1.25000 0.95061 0.98239 0.95971 1.69977 1.01845 1.37804 1.43575 0.86555 0.78330 0.84261 0.78629 1.20665 1.21184 1.19773 1.19924 0.77533 0.84217 0.86880 1.90718 1.46473 1.85582 1.15532 1.22896 0.98485 0.93022 0.91936 0.92897 0.91417 0.92424 0.90723 0.95168 0.93859 0.90046 0.90443 0.90135 0.90094 0.89425 0.90733 0.91204 0.91243 0.91807 0.96558 0.96086 0.92973 0.89797 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.55 37.16 0.35 -1.10 16 2 C 0.04 0.46 5.58 -3.83 -0.02 0.43 16 3 N -0.51 -6.82 5.36 -230.79 -1.24 -8.06 16 4 C 0.04 0.50 6.73 -2.54 -0.02 0.49 16 5 C -0.11 -1.37 6.16 -25.89 -0.16 -1.53 16 6 C -0.10 -1.41 0.73 -155.33 -0.11 -1.53 16 7 C -0.12 -1.29 6.26 -25.62 -0.16 -1.45 16 8 C 0.10 1.41 7.37 -2.89 -0.02 1.39 16 9 N -0.62 -11.49 2.95 -172.55 -0.51 -12.00 16 10 C 0.13 2.82 5.88 -4.04 -0.02 2.80 16 11 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.53 10.17 6.68 -11.31 -0.08 10.09 16 21 O -0.51 -12.06 17.50 5.56 0.10 -11.96 16 22 C 0.06 0.81 4.07 -2.44 -0.01 0.80 16 23 H 0.05 0.49 7.24 -51.93 -0.38 0.11 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.28 7.95 -51.93 -0.41 -0.13 16 28 H 0.04 0.44 7.65 -51.93 -0.40 0.04 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.77 7.44 -51.93 -0.39 0.38 16 31 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 32 H 0.08 0.73 7.95 -51.93 -0.41 0.32 16 33 H 0.09 0.72 7.45 -51.93 -0.39 0.33 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.60 7.96 -51.93 -0.41 1.18 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 42 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -34.20 335.30 -9.04 -43.24 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -7.35 Total: -3.41 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.81 Total: -3.17 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.01 Total: -46.70 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.10 Total: -11.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.20 -9.04 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272437198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.815 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds