Wall clock time and date at job start Mon Mar 30 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.46505 * 120.00211 * 80.57269 * 3 2 1 5 5 C 1.52997 * 109.46778 * 89.99947 * 4 3 2 6 6 N 1.46502 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.36933 * 120.00251 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00036 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99445 * 180.02562 * 9 7 6 11 11 Si 1.86789 * 120.00008 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46977 * 90.00115 * 11 9 7 13 13 H 1.48504 * 109.47264 * 209.99683 * 11 9 7 14 14 H 1.48494 * 109.47528 * 330.00367 * 11 9 7 15 15 C 1.34775 * 119.99973 * 260.30619 * 3 2 1 16 16 O 1.21612 * 120.00273 * 182.44323 * 15 3 2 17 17 C 1.47107 * 120.00084 * 2.43484 * 15 3 2 18 18 C 1.50698 * 119.99789 * 44.55014 * 17 15 3 19 19 C 1.32993 * 120.00231 * 224.55077 * 17 15 3 20 20 C 1.51407 * 136.31207 * 359.63325 * 19 17 15 21 21 C 1.53383 * 87.51625 * 206.05358 * 20 19 17 22 22 C 1.51403 * 136.31613 * 180.02562 * 19 17 15 23 23 H 1.08992 * 109.47646 * 299.99908 * 1 2 3 24 24 H 1.09000 * 109.47222 * 60.00247 * 1 2 3 25 25 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47140 * 240.00100 * 2 1 3 27 27 H 1.09000 * 109.47222 * 119.99753 * 2 1 3 28 28 H 1.08991 * 109.47369 * 210.00491 * 4 3 2 29 29 H 1.09002 * 109.47072 * 330.00554 * 4 3 2 30 30 H 1.08998 * 109.47879 * 300.00579 * 5 4 3 31 31 H 1.09002 * 109.46824 * 60.00454 * 5 4 3 32 32 H 0.96997 * 119.99310 * 0.02562 * 6 5 4 33 33 H 0.97008 * 119.99249 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47166 * 65.74861 * 18 17 15 35 35 H 1.08994 * 109.46979 * 185.74414 * 18 17 15 36 36 H 1.08997 * 109.47485 * 305.75035 * 18 17 15 37 37 H 1.08995 * 113.56310 * 320.63330 * 20 19 17 38 38 H 1.08995 * 113.56103 * 91.37489 * 20 19 17 39 39 H 1.08996 * 113.97257 * 220.29505 * 21 20 19 40 40 H 1.08999 * 113.59903 * 88.79127 * 21 20 19 41 41 H 1.09005 * 113.55788 * 268.62565 * 22 19 17 42 42 H 1.08992 * 113.56189 * 39.35754 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0666 2.1412 1.2516 5 6 3.4250 1.9313 1.9235 6 7 3.4731 2.6907 3.1754 7 6 4.5988 2.6562 3.9544 8 1 5.4513 2.0695 3.6456 9 6 4.6445 3.3762 5.1403 10 7 5.7267 3.3434 5.8887 11 14 3.1708 4.3927 5.6732 12 1 2.2679 3.5571 6.5050 13 1 3.6349 5.5598 6.4656 14 1 2.4379 4.8693 4.4728 15 6 2.4282 1.9510 -1.1505 16 8 2.8751 3.0821 -1.1435 17 6 2.3352 1.2048 -2.4149 18 6 1.0850 0.4296 -2.7420 19 6 3.3544 1.2143 -3.2692 20 6 4.7300 1.8445 -3.3255 21 6 4.6274 1.7722 -4.8541 22 6 3.6543 0.6057 -4.6227 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9262 3.2009 1.0389 29 1 1.2750 1.7962 1.9169 30 1 3.5654 0.8716 2.1362 31 1 4.2165 2.2763 1.2582 32 1 2.7075 3.2180 3.4524 33 1 5.7588 3.8469 6.7172 34 1 0.2530 1.1212 -2.8750 35 1 1.2382 -0.1355 -3.6613 36 1 0.8596 -0.2574 -1.9264 37 1 4.7585 2.8636 -2.9400 38 1 5.5158 1.2129 -2.9112 39 1 5.5549 1.4808 -5.3469 40 1 4.1628 2.6504 -5.3023 41 1 4.1449 -0.3659 -4.5644 42 1 2.8009 0.6092 -5.3007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273368462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:41 Heat of formation + Delta-G solvation = 30.853573 kcal Electronic energy + Delta-G solvation = -20572.821947 eV Core-core repulsion = 17555.174841 eV Total energy + Delta-G solvation = -3017.647106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28251 -38.55236 -36.25371 -34.99790 -33.21816 -31.54978 -30.61606 -28.12951 -26.64729 -25.66988 -24.07318 -23.59375 -22.28539 -21.35422 -19.74059 -17.88190 -17.47835 -16.54735 -16.39259 -15.58611 -15.29581 -14.83466 -14.56993 -14.09551 -13.84208 -13.66531 -13.37928 -13.02363 -12.79684 -12.63350 -12.58259 -12.37932 -12.12823 -11.87936 -11.53831 -11.49962 -11.18607 -11.08821 -11.03268 -10.99646 -10.69679 -10.57450 -10.13732 -9.58279 -9.53365 -8.91732 -8.85877 -8.51765 -7.20467 -5.73135 -3.08913 1.46091 2.93396 3.20091 3.40871 3.44301 3.48518 4.14006 4.32510 4.55202 4.62967 4.72398 4.82274 4.93340 5.06865 5.08356 5.25160 5.31917 5.38199 5.42932 5.46272 5.50925 5.56632 5.59607 5.60625 5.66495 5.72664 5.76945 5.81115 5.87761 5.99028 6.05662 6.08699 6.17481 6.52209 6.60773 6.71429 6.87875 7.53295 8.02421 8.33014 8.45388 9.24100 9.96350 10.16038 11.45342 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.004439 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.306249 B = 6306.063664 C = 7049.811403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 N -0.602 5.602 4 C 0.105 3.895 5 C 0.147 3.853 6 N -0.754 5.754 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.558 3.442 16 O -0.532 6.532 17 C -0.155 4.155 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.102 4.102 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 -9.897 -21.626 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 N -0.335 5.335 4 C -0.017 4.017 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.715 3.285 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.346 3.654 16 O -0.408 6.408 17 C -0.158 4.158 18 C -0.184 4.184 19 C -0.090 4.090 20 C -0.149 4.149 21 C -0.175 4.175 22 C -0.139 4.139 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.266 -9.342 -21.533 25.619 hybrid contribution -0.999 0.746 0.611 1.389 sum -11.265 -8.596 -20.922 25.269 Atomic orbital electron populations 1.22416 0.95926 1.02395 1.03063 1.21887 0.94392 0.82857 1.03789 1.47800 1.63964 1.14105 1.07612 1.21687 0.98965 0.97202 0.83884 1.20881 0.94244 0.95231 0.87752 1.42568 1.16981 1.57716 1.22705 1.19040 0.93070 1.24889 1.00172 0.89273 1.24662 0.97095 1.00135 0.97262 1.69709 1.27332 1.46163 1.15094 0.86529 0.83199 0.80460 0.78295 1.21048 1.21651 1.20249 1.18345 0.77373 0.86120 0.83516 1.90817 1.44692 1.18736 1.86603 1.20347 0.97664 1.03438 0.94350 1.21370 0.94351 0.99631 1.03091 1.23112 0.95511 0.96044 0.94308 1.22231 0.94150 1.02484 0.96069 1.22644 0.99741 0.98620 0.96452 1.22238 0.99590 0.98677 0.93378 0.91972 0.91685 0.91379 0.89035 0.90175 0.89912 0.90593 0.95611 0.95128 0.80695 0.93068 0.91518 0.91623 0.88801 0.89577 0.88673 0.90524 0.89786 0.88459 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.09 37.16 0.34 -1.15 16 2 C 0.09 0.97 5.55 -4.04 -0.02 0.94 16 3 N -0.60 -8.69 2.48 -175.08 -0.43 -9.12 16 4 C 0.11 1.79 5.50 -4.04 -0.02 1.77 16 5 C 0.15 3.11 6.58 -4.04 -0.03 3.08 16 6 N -0.75 -19.02 5.41 -59.91 -0.32 -19.35 16 7 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -30.15 13.97 55.49 0.78 -29.38 16 11 Si 0.88 22.73 27.73 -169.99 -4.71 18.01 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.28 -6.74 6.52 56.52 0.37 -6.38 16 15 C 0.56 8.88 7.20 -12.66 -0.09 8.79 16 16 O -0.53 -10.73 15.93 5.27 0.08 -10.64 16 17 C -0.15 -1.89 4.95 -102.85 -0.51 -2.40 16 18 C -0.13 -1.09 8.33 36.00 0.30 -0.79 16 19 C -0.09 -1.01 6.58 -100.48 -0.66 -1.67 16 20 C -0.11 -1.30 7.62 -27.55 -0.21 -1.51 16 21 C -0.14 -1.18 8.17 -26.20 -0.21 -1.39 16 22 C -0.10 -0.82 7.40 -27.41 -0.20 -1.02 16 23 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 24 H 0.06 0.52 6.04 -51.93 -0.31 0.21 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.81 4.97 -51.93 -0.26 0.55 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.55 7.46 -51.93 -0.39 1.16 16 29 H 0.08 1.14 7.77 -51.93 -0.40 0.74 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.36 8.76 5.53 -40.82 -0.23 8.53 16 33 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 34 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 35 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 36 H 0.09 0.68 3.07 -51.93 -0.16 0.52 16 37 H 0.09 1.22 7.74 -51.93 -0.40 0.81 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -35.34 334.61 -7.90 -43.23 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.75 Total: 4.86 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.58 Total: -2.66 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.02 Total: -57.84 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.34 -7.90 -43.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273368462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.085 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds