Wall clock time and date at job start Mon Mar 30 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.46505 * 120.00211 * 80.57269 * 3 2 1 5 5 C 1.52997 * 109.46778 * 89.99947 * 4 3 2 6 6 N 1.46502 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.36933 * 120.00251 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00036 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99445 * 180.02562 * 9 7 6 11 11 Si 1.86789 * 120.00008 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46977 * 90.00115 * 11 9 7 13 13 H 1.48504 * 109.47264 * 209.99683 * 11 9 7 14 14 H 1.48494 * 109.47528 * 330.00367 * 11 9 7 15 15 C 1.34775 * 119.99973 * 260.30619 * 3 2 1 16 16 O 1.21612 * 120.00273 * 182.44323 * 15 3 2 17 17 C 1.47107 * 120.00084 * 2.43484 * 15 3 2 18 18 C 1.50698 * 119.99789 * 44.55014 * 17 15 3 19 19 C 1.32993 * 120.00231 * 224.55077 * 17 15 3 20 20 C 1.51407 * 136.31207 * 359.63325 * 19 17 15 21 21 C 1.53383 * 87.51625 * 206.05358 * 20 19 17 22 22 C 1.51403 * 136.31613 * 180.02562 * 19 17 15 23 23 H 1.08992 * 109.47646 * 299.99908 * 1 2 3 24 24 H 1.09000 * 109.47222 * 60.00247 * 1 2 3 25 25 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47140 * 240.00100 * 2 1 3 27 27 H 1.09000 * 109.47222 * 119.99753 * 2 1 3 28 28 H 1.08991 * 109.47369 * 210.00491 * 4 3 2 29 29 H 1.09002 * 109.47072 * 330.00554 * 4 3 2 30 30 H 1.08998 * 109.47879 * 300.00579 * 5 4 3 31 31 H 1.09002 * 109.46824 * 60.00454 * 5 4 3 32 32 H 0.96997 * 119.99310 * 0.02562 * 6 5 4 33 33 H 0.97008 * 119.99249 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47166 * 65.74861 * 18 17 15 35 35 H 1.08994 * 109.46979 * 185.74414 * 18 17 15 36 36 H 1.08997 * 109.47485 * 305.75035 * 18 17 15 37 37 H 1.08995 * 113.56310 * 320.63330 * 20 19 17 38 38 H 1.08995 * 113.56103 * 91.37489 * 20 19 17 39 39 H 1.08996 * 113.97257 * 220.29505 * 21 20 19 40 40 H 1.08999 * 113.59903 * 88.79127 * 21 20 19 41 41 H 1.09005 * 113.55788 * 268.62565 * 22 19 17 42 42 H 1.08992 * 113.56189 * 39.35754 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0666 2.1412 1.2516 5 6 3.4250 1.9313 1.9235 6 7 3.4731 2.6907 3.1754 7 6 4.5988 2.6562 3.9544 8 1 5.4513 2.0695 3.6456 9 6 4.6445 3.3762 5.1403 10 7 5.7267 3.3434 5.8887 11 14 3.1708 4.3927 5.6732 12 1 2.2679 3.5571 6.5050 13 1 3.6349 5.5598 6.4656 14 1 2.4379 4.8693 4.4728 15 6 2.4282 1.9510 -1.1505 16 8 2.8751 3.0821 -1.1435 17 6 2.3352 1.2048 -2.4149 18 6 1.0850 0.4296 -2.7420 19 6 3.3544 1.2143 -3.2692 20 6 4.7300 1.8445 -3.3255 21 6 4.6274 1.7722 -4.8541 22 6 3.6543 0.6057 -4.6227 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9262 3.2009 1.0389 29 1 1.2750 1.7962 1.9169 30 1 3.5654 0.8716 2.1362 31 1 4.2165 2.2763 1.2582 32 1 2.7075 3.2180 3.4524 33 1 5.7588 3.8469 6.7172 34 1 0.2530 1.1212 -2.8750 35 1 1.2382 -0.1355 -3.6613 36 1 0.8596 -0.2574 -1.9264 37 1 4.7585 2.8636 -2.9400 38 1 5.5158 1.2129 -2.9112 39 1 5.5549 1.4808 -5.3469 40 1 4.1628 2.6504 -5.3023 41 1 4.1449 -0.3659 -4.5644 42 1 2.8009 0.6092 -5.3007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273368462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:40 Heat of formation + Delta-G solvation = 7.417935 kcal Electronic energy + Delta-G solvation = -20573.838192 eV Core-core repulsion = 17555.174841 eV Total energy + Delta-G solvation = -3018.663352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39588 -39.43795 -37.62498 -36.70884 -34.48231 -33.39240 -31.76763 -29.73607 -27.41325 -26.44235 -25.79059 -24.49780 -23.70728 -22.84142 -20.88972 -19.69249 -18.78437 -17.70770 -17.40211 -16.67478 -16.42340 -16.32360 -15.82693 -15.56649 -15.26380 -15.19790 -14.76957 -14.42914 -13.80130 -13.71824 -13.47762 -13.36102 -13.15652 -13.01497 -12.90325 -12.85214 -12.63124 -12.40317 -12.16260 -12.07551 -11.94931 -11.87320 -11.77826 -11.41054 -11.05046 -10.68851 -9.87744 -9.67194 -9.41295 -8.08748 -5.44983 0.51446 1.34945 1.39723 1.46904 1.77075 2.08089 2.44315 3.21868 3.25388 3.54599 3.67448 3.77125 3.87289 4.06306 4.09629 4.11100 4.22596 4.38211 4.42632 4.46123 4.54313 4.70906 4.71752 4.78848 4.80683 4.87636 4.95789 4.98195 4.99523 5.01951 5.03991 5.10516 5.30487 5.35487 5.47491 5.51799 5.66886 5.77346 6.14021 6.40105 6.98930 7.12665 7.71973 7.94235 9.12678 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.004439 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.306249 B = 6306.063664 C = 7049.811403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 N -0.599 5.599 4 C 0.118 3.882 5 C 0.152 3.848 6 N -0.754 5.754 7 C -0.245 4.245 8 H 0.051 0.949 9 C -0.060 4.060 10 N -0.981 5.981 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.256 1.256 15 C 0.547 3.453 16 O -0.590 6.590 17 C -0.169 4.169 18 C -0.121 4.121 19 C -0.098 4.098 20 C -0.132 4.132 21 C -0.128 4.128 22 C -0.082 4.082 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.033 0.967 31 H -0.002 1.002 32 H 0.369 0.631 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.585 -11.583 -23.336 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.035 4.035 3 N -0.330 5.330 4 C -0.006 4.006 5 C 0.024 3.976 6 N -0.401 5.401 7 C -0.376 4.376 8 H 0.069 0.931 9 C -0.252 4.252 10 N -0.631 5.631 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.219 1.219 14 H -0.181 1.181 15 C 0.338 3.662 16 O -0.471 6.471 17 C -0.172 4.172 18 C -0.177 4.177 19 C -0.099 4.099 20 C -0.169 4.169 21 C -0.166 4.166 22 C -0.119 4.119 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.051 0.949 31 H 0.016 0.984 32 H 0.202 0.798 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.160 -11.088 -23.278 28.948 hybrid contribution 0.047 1.235 1.124 1.671 sum -13.113 -9.853 -22.154 27.565 Atomic orbital electron populations 1.22381 0.93782 1.04193 1.02831 1.22244 0.96111 0.80329 1.04852 1.47930 1.63386 1.15521 1.06205 1.21386 0.96929 0.96923 0.85335 1.20919 0.96039 0.94703 0.85905 1.42506 1.15866 1.58304 1.23385 1.18981 0.93420 1.24264 1.00912 0.93102 1.25567 1.00655 1.01700 0.97234 1.69896 1.30024 1.47467 1.15734 0.85336 0.79200 0.78350 0.78474 1.19221 1.21851 1.18096 1.19164 0.76158 0.85769 0.85131 1.90782 1.47312 1.21409 1.87575 1.20455 0.99807 1.04209 0.92680 1.21404 0.92177 0.99436 1.04658 1.23578 0.94808 0.95739 0.95789 1.22384 0.95240 1.00394 0.98876 1.22636 1.01078 0.99170 0.93681 1.22253 0.99938 0.98896 0.90792 0.92908 0.91259 0.88512 0.87093 0.90098 0.91868 0.87746 0.94856 0.98361 0.79797 0.93034 0.91456 0.89250 0.87527 0.93511 0.88488 0.88508 0.90032 0.86254 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.09 71.98 0.65 -1.65 16 2 C 0.09 1.57 5.55 86.38 0.48 2.05 16 3 N -0.60 -16.99 2.48 -826.09 -2.05 -19.04 16 4 C 0.12 4.00 5.50 86.38 0.48 4.47 16 5 C 0.15 6.58 6.58 86.38 0.57 7.15 16 6 N -0.75 -38.40 5.41 -343.45 -1.86 -40.26 16 7 C -0.25 -14.97 10.47 84.03 0.88 -14.09 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 10 N -0.98 -64.88 13.97 21.65 0.30 -64.58 16 11 Si 0.96 46.87 27.73 68.60 1.90 48.78 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 15 C 0.55 17.72 7.20 86.57 0.62 18.34 16 16 O -0.59 -25.25 15.93 -4.07 -0.06 -25.32 16 17 C -0.17 -3.91 4.95 -18.70 -0.09 -4.01 16 18 C -0.12 -1.66 8.33 71.24 0.59 -1.07 16 19 C -0.10 -2.13 6.58 -17.17 -0.11 -2.24 16 20 C -0.13 -3.15 7.62 30.06 0.23 -2.92 16 21 C -0.13 -2.01 8.17 30.94 0.25 -1.75 16 22 C -0.08 -1.05 7.40 30.15 0.22 -0.83 16 23 H 0.05 0.82 7.84 -2.39 -0.02 0.80 16 24 H 0.07 0.88 6.04 -2.39 -0.01 0.87 16 25 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.11 1.62 4.97 -2.39 -0.01 1.61 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.06 2.41 7.46 -2.39 -0.02 2.39 16 29 H 0.10 2.95 7.77 -2.39 -0.02 2.93 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.37 17.51 5.53 -92.71 -0.51 17.00 16 33 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 34 H 0.07 0.94 7.91 -2.39 -0.02 0.92 16 35 H 0.09 0.83 7.45 -2.39 -0.02 0.81 16 36 H 0.11 1.14 3.07 -2.39 -0.01 1.13 16 37 H 0.05 1.46 7.74 -2.39 -0.02 1.44 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.10 0.90 8.12 -2.39 -0.02 0.88 16 Total: -1.00 -81.36 334.61 3.91 -77.45 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.44 Total: 22.72 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.24 Total: 0.25 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -3.61 Total: -123.88 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.06 Total: -25.32 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.78 kcal Total: -81.36 3.91 -77.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273368462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.866 kcal (2) G-P(sol) polarization free energy of solvation -81.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds