Wall clock time and date at job start Mon Mar 30 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47002 * 2 1 4 4 C 1.46493 * 120.00274 * 79.29368 * 3 2 1 5 5 C 1.53004 * 109.47162 * 90.00164 * 4 3 2 6 6 N 1.46499 * 109.47344 * 180.02562 * 5 4 3 7 7 C 1.36936 * 120.00520 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99202 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00394 * 179.97438 * 7 6 5 10 10 N 1.31623 * 120.00376 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99911 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47312 * 89.99479 * 11 9 7 13 13 H 1.48504 * 109.46967 * 209.99749 * 11 9 7 14 14 H 1.48500 * 109.47225 * 329.99317 * 11 9 7 15 15 C 1.34781 * 119.99852 * 259.29266 * 3 2 1 16 16 O 1.21282 * 119.99923 * 182.94559 * 15 3 2 17 17 C 1.50704 * 120.00079 * 2.94610 * 15 3 2 18 18 C 1.52997 * 115.54868 * 170.22176 * 17 15 3 19 19 C 1.53000 * 117.50169 * 34.32429 * 18 17 15 20 20 C 1.53003 * 117.50006 * 325.66230 * 18 17 15 21 21 C 1.52992 * 117.49721 * 24.50604 * 17 15 3 22 22 C 1.52998 * 60.00362 * 252.51438 * 21 17 15 23 23 H 1.08999 * 109.47112 * 294.08056 * 1 2 3 24 24 H 1.08995 * 109.47044 * 54.07857 * 1 2 3 25 25 H 1.08996 * 109.46984 * 174.07957 * 1 2 3 26 26 H 1.08998 * 109.47331 * 119.99907 * 2 1 3 27 27 H 1.09001 * 109.47368 * 240.00003 * 2 1 3 28 28 H 1.09003 * 109.47235 * 209.99929 * 4 3 2 29 29 H 1.09001 * 109.46991 * 330.00180 * 4 3 2 30 30 H 1.09003 * 109.46853 * 299.99998 * 5 4 3 31 31 H 1.08996 * 109.47602 * 60.00111 * 5 4 3 32 32 H 0.97002 * 119.99806 * 359.97438 * 6 5 4 33 33 H 0.96991 * 120.00266 * 180.02562 * 10 9 7 34 34 H 1.09000 * 115.54864 * 179.97438 * 18 17 15 35 35 H 1.08997 * 117.49825 * 0.02562 * 19 18 17 36 36 H 1.09006 * 117.49284 * 145.02354 * 19 18 17 37 37 H 1.08995 * 117.50298 * 214.98679 * 20 18 17 38 38 H 1.08999 * 117.49510 * 359.97438 * 20 18 17 39 39 H 1.08999 * 117.50477 * 0.02562 * 21 17 15 40 40 H 1.09004 * 117.49445 * 145.02261 * 21 17 15 41 41 H 1.09004 * 117.50249 * 252.51494 * 22 21 17 42 42 H 1.08995 * 117.51812 * 107.47931 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0403 2.1504 1.2465 5 6 3.3843 1.9458 1.9485 6 7 3.4061 2.7145 3.1954 7 6 4.5147 2.6852 3.9987 8 1 5.3732 2.0956 3.7127 9 6 4.5355 3.4140 5.1798 10 7 5.6009 3.3854 5.9522 11 14 3.0508 4.4343 5.6740 12 1 2.1305 3.6048 6.4928 13 1 3.4982 5.6073 6.4673 14 1 2.3435 4.9019 4.4549 15 6 2.4474 1.9443 -1.1469 16 8 2.9014 3.0689 -1.1376 17 6 2.3630 1.1765 -2.4409 18 6 2.6557 1.9835 -3.7074 19 6 3.7046 3.0932 -3.6114 20 6 2.2206 3.4503 -3.7267 21 6 1.3147 0.0663 -2.5365 22 6 2.7981 -0.2903 -2.4216 23 1 -0.3633 0.4193 0.9382 24 1 -0.3633 0.6029 -0.8322 25 1 -0.3633 -1.0221 -0.1060 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.9046 3.2086 1.0230 29 1 1.2349 1.8104 1.8975 30 1 3.5200 0.8876 2.1721 31 1 4.1897 2.2859 1.2976 32 1 2.6351 3.2444 3.4521 33 1 5.6153 3.8944 6.7777 34 1 2.5951 1.4281 -4.6433 35 1 4.1866 3.2479 -2.6461 36 1 4.3335 3.2680 -4.4844 37 1 1.8738 3.8599 -4.6753 38 1 1.7255 3.8401 -2.8373 39 1 0.6857 -0.1086 -1.6637 40 1 0.8330 -0.0892 -3.5019 41 1 3.2924 -0.6804 -3.3114 42 1 3.1457 -0.6997 -1.4732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273441179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:23 Heat of formation + Delta-G solvation = 93.174805 kcal Electronic energy + Delta-G solvation = -21074.480874 eV Core-core repulsion = 18059.536219 eV Total energy + Delta-G solvation = -3014.944655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30732 -37.46589 -37.29893 -35.28458 -34.09852 -31.77668 -30.80137 -28.21587 -25.11828 -24.04378 -23.40884 -22.59250 -22.04094 -21.77258 -20.86232 -19.05371 -17.55277 -16.69659 -16.47937 -15.64991 -15.43913 -14.75652 -14.41942 -14.24545 -13.80120 -13.69552 -13.57826 -13.15688 -12.80302 -12.58655 -12.53389 -11.95995 -11.59899 -11.51175 -11.34310 -11.27641 -11.22933 -11.06005 -10.95789 -10.71478 -10.64279 -10.15257 -10.05048 -9.58531 -9.54015 -9.38736 -8.87615 -8.56335 -7.22222 -5.74467 -3.10534 2.45237 2.96729 3.39492 3.42620 3.47233 3.50610 4.04052 4.17460 4.28312 4.57827 4.61472 4.70095 4.73980 4.95493 5.04881 5.15022 5.18995 5.25014 5.35645 5.37666 5.43523 5.49490 5.57884 5.63490 5.66165 5.69369 5.75637 5.77245 5.79354 5.93116 5.95837 6.01851 6.25171 6.44298 6.53328 6.66184 6.84400 7.47575 8.00783 8.28288 8.43947 9.22489 9.94701 10.14123 11.43982 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.004744 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.545982 B = 5900.447867 C = 6385.923077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.043 3.957 3 N -0.602 5.602 4 C 0.106 3.894 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.546 3.454 16 O -0.522 6.522 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.168 4.168 20 C -0.168 4.168 21 C -0.207 4.207 22 C -0.166 4.166 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.360 0.640 33 H 0.260 0.740 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 -9.284 -20.359 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.079 4.079 3 N -0.335 5.335 4 C -0.017 4.017 5 C 0.019 3.981 6 N -0.399 5.399 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.583 5.583 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.203 1.203 15 C 0.334 3.666 16 O -0.398 6.398 17 C -0.121 4.121 18 C -0.136 4.136 19 C -0.205 4.205 20 C -0.205 4.205 21 C -0.243 4.243 22 C -0.203 4.203 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.146 0.854 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.165 0.835 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.670 -8.725 -20.252 24.949 hybrid contribution -0.973 0.723 0.505 1.313 sum -12.643 -8.002 -19.747 24.776 Atomic orbital electron populations 1.22357 0.96169 1.02568 1.02853 1.23069 0.94624 0.83764 1.06401 1.47780 1.63693 1.13960 1.08045 1.21695 0.99054 0.96992 0.83936 1.20879 0.94363 0.95147 0.87709 1.42563 1.17696 1.57143 1.22538 1.19035 0.93785 1.24619 0.99792 0.89268 1.24660 0.97163 1.00082 0.97198 1.69701 1.28217 1.45891 1.14450 0.86533 0.83306 0.80489 0.78161 1.21054 1.21637 1.20281 1.19504 0.77272 0.86236 0.83570 1.90667 1.44253 1.19097 1.85789 1.20890 1.07066 0.90319 0.93785 1.21356 1.06982 0.90378 0.94859 1.23209 0.92021 1.01119 1.04157 1.22940 0.98740 0.96137 1.02718 1.24659 0.92785 1.00267 1.06544 1.23337 0.97769 0.94861 1.04304 0.91709 0.91302 0.91009 0.90285 0.85445 0.89910 0.90672 0.95668 0.95079 0.80708 0.93044 0.87514 0.86368 0.89754 0.89581 0.88116 0.83470 0.88197 0.87554 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.70 37.16 0.32 -1.11 16 2 C 0.04 0.42 5.14 -4.04 -0.02 0.40 16 3 N -0.60 -8.23 2.49 -173.68 -0.43 -8.66 16 4 C 0.11 1.75 5.48 -4.04 -0.02 1.72 16 5 C 0.15 3.05 6.58 -4.04 -0.03 3.02 16 6 N -0.75 -18.80 5.41 -59.91 -0.32 -19.12 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 9 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 10 N -0.93 -30.04 13.97 55.49 0.78 -29.26 16 11 Si 0.88 22.62 27.74 -169.99 -4.71 17.90 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 15 C 0.55 8.10 7.13 -10.98 -0.08 8.02 16 16 O -0.52 -9.61 11.57 5.56 0.06 -9.54 16 17 C -0.12 -1.31 2.47 -155.66 -0.38 -1.70 16 18 C -0.12 -1.30 5.85 -90.62 -0.53 -1.83 16 19 C -0.17 -2.14 9.66 -26.69 -0.26 -2.40 16 20 C -0.17 -2.05 9.68 -26.69 -0.26 -2.30 16 21 C -0.21 -1.63 8.89 -26.74 -0.24 -1.87 16 22 C -0.17 -1.40 9.05 -26.73 -0.24 -1.64 16 23 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 24 H 0.07 0.55 6.79 -51.93 -0.35 0.20 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.13 1.03 1.87 -52.77 -0.10 0.93 16 28 H 0.08 1.50 7.46 -51.93 -0.39 1.11 16 29 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.36 8.67 5.53 -40.82 -0.23 8.44 16 33 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 1.87 5.95 -51.93 -0.31 1.56 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.45 6.61 -51.93 -0.34 1.11 16 39 H 0.15 1.07 1.78 -52.21 -0.09 0.98 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.12 0.95 6.18 -51.93 -0.32 0.63 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -34.21 323.98 -8.08 -42.28 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.34 Total: 8.46 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.99 Total: -6.95 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.02 Total: -57.04 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.21 -8.08 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273441179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.458 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds