Wall clock time and date at job start Mon Mar 30 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47002 * 2 1 4 4 C 1.46493 * 120.00274 * 79.29368 * 3 2 1 5 5 C 1.53004 * 109.47162 * 90.00164 * 4 3 2 6 6 N 1.46499 * 109.47344 * 180.02562 * 5 4 3 7 7 C 1.36936 * 120.00520 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99202 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00394 * 179.97438 * 7 6 5 10 10 N 1.31623 * 120.00376 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99911 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47312 * 89.99479 * 11 9 7 13 13 H 1.48504 * 109.46967 * 209.99749 * 11 9 7 14 14 H 1.48500 * 109.47225 * 329.99317 * 11 9 7 15 15 C 1.34781 * 119.99852 * 259.29266 * 3 2 1 16 16 O 1.21282 * 119.99923 * 182.94559 * 15 3 2 17 17 C 1.50704 * 120.00079 * 2.94610 * 15 3 2 18 18 C 1.52997 * 115.54868 * 170.22176 * 17 15 3 19 19 C 1.53000 * 117.50169 * 34.32429 * 18 17 15 20 20 C 1.53003 * 117.50006 * 325.66230 * 18 17 15 21 21 C 1.52992 * 117.49721 * 24.50604 * 17 15 3 22 22 C 1.52998 * 60.00362 * 252.51438 * 21 17 15 23 23 H 1.08999 * 109.47112 * 294.08056 * 1 2 3 24 24 H 1.08995 * 109.47044 * 54.07857 * 1 2 3 25 25 H 1.08996 * 109.46984 * 174.07957 * 1 2 3 26 26 H 1.08998 * 109.47331 * 119.99907 * 2 1 3 27 27 H 1.09001 * 109.47368 * 240.00003 * 2 1 3 28 28 H 1.09003 * 109.47235 * 209.99929 * 4 3 2 29 29 H 1.09001 * 109.46991 * 330.00180 * 4 3 2 30 30 H 1.09003 * 109.46853 * 299.99998 * 5 4 3 31 31 H 1.08996 * 109.47602 * 60.00111 * 5 4 3 32 32 H 0.97002 * 119.99806 * 359.97438 * 6 5 4 33 33 H 0.96991 * 120.00266 * 180.02562 * 10 9 7 34 34 H 1.09000 * 115.54864 * 179.97438 * 18 17 15 35 35 H 1.08997 * 117.49825 * 0.02562 * 19 18 17 36 36 H 1.09006 * 117.49284 * 145.02354 * 19 18 17 37 37 H 1.08995 * 117.50298 * 214.98679 * 20 18 17 38 38 H 1.08999 * 117.49510 * 359.97438 * 20 18 17 39 39 H 1.08999 * 117.50477 * 0.02562 * 21 17 15 40 40 H 1.09004 * 117.49445 * 145.02261 * 21 17 15 41 41 H 1.09004 * 117.50249 * 252.51494 * 22 21 17 42 42 H 1.08995 * 117.51812 * 107.47931 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0403 2.1504 1.2465 5 6 3.3843 1.9458 1.9485 6 7 3.4061 2.7145 3.1954 7 6 4.5147 2.6852 3.9987 8 1 5.3732 2.0956 3.7127 9 6 4.5355 3.4140 5.1798 10 7 5.6009 3.3854 5.9522 11 14 3.0508 4.4343 5.6740 12 1 2.1305 3.6048 6.4928 13 1 3.4982 5.6073 6.4673 14 1 2.3435 4.9019 4.4549 15 6 2.4474 1.9443 -1.1469 16 8 2.9014 3.0689 -1.1376 17 6 2.3630 1.1765 -2.4409 18 6 2.6557 1.9835 -3.7074 19 6 3.7046 3.0932 -3.6114 20 6 2.2206 3.4503 -3.7267 21 6 1.3147 0.0663 -2.5365 22 6 2.7981 -0.2903 -2.4216 23 1 -0.3633 0.4193 0.9382 24 1 -0.3633 0.6029 -0.8322 25 1 -0.3633 -1.0221 -0.1060 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.9046 3.2086 1.0230 29 1 1.2349 1.8104 1.8975 30 1 3.5200 0.8876 2.1721 31 1 4.1897 2.2859 1.2976 32 1 2.6351 3.2444 3.4521 33 1 5.6153 3.8944 6.7777 34 1 2.5951 1.4281 -4.6433 35 1 4.1866 3.2479 -2.6461 36 1 4.3335 3.2680 -4.4844 37 1 1.8738 3.8599 -4.6753 38 1 1.7255 3.8401 -2.8373 39 1 0.6857 -0.1086 -1.6637 40 1 0.8330 -0.0892 -3.5019 41 1 3.2924 -0.6804 -3.3114 42 1 3.1457 -0.6997 -1.4732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273441179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:23 Heat of formation + Delta-G solvation = 70.827265 kcal Electronic energy + Delta-G solvation = -21075.449936 eV Core-core repulsion = 18059.536219 eV Total energy + Delta-G solvation = -3015.913717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24835 -38.52860 -38.32275 -36.94021 -35.38494 -33.67264 -32.00437 -29.81381 -26.19301 -25.52273 -24.26514 -23.57800 -23.39620 -22.86623 -22.08805 -20.20217 -19.56174 -17.72237 -17.37692 -16.93159 -16.52817 -16.32993 -15.77826 -15.47368 -15.34182 -15.13255 -14.80861 -14.58590 -14.02118 -13.65833 -13.48664 -13.28020 -13.02154 -12.93093 -12.60121 -12.44487 -12.38301 -12.17528 -12.15552 -11.92797 -11.88041 -11.83887 -11.44151 -11.05246 -10.87940 -10.49325 -10.36615 -9.72071 -9.41147 -8.08921 -5.45081 1.34271 1.39030 1.44732 1.46330 1.89402 2.43788 2.64729 3.21739 3.23249 3.34787 3.47570 3.65842 3.78359 3.95376 3.97918 4.08623 4.11675 4.23613 4.31428 4.35231 4.38823 4.46109 4.51819 4.72913 4.77767 4.81535 4.84545 4.94332 4.98902 4.99989 5.05825 5.09490 5.18015 5.32331 5.38949 5.43472 5.53257 5.67234 6.13914 6.41449 6.98975 7.18630 7.72150 7.93884 9.12541 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.004744 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.545982 B = 5900.447867 C = 6385.923077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.035 3.965 3 N -0.601 5.601 4 C 0.120 3.880 5 C 0.152 3.848 6 N -0.754 5.754 7 C -0.244 4.244 8 H 0.051 0.949 9 C -0.060 4.060 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.256 1.256 15 C 0.534 3.466 16 O -0.571 6.571 17 C -0.150 4.150 18 C -0.097 4.097 19 C -0.188 4.188 20 C -0.173 4.173 21 C -0.180 4.180 22 C -0.156 4.156 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.000 1.000 32 H 0.368 0.632 33 H 0.261 0.739 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.155 0.845 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 -11.057 -22.163 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.085 4.085 3 N -0.333 5.333 4 C -0.004 4.004 5 C 0.024 3.976 6 N -0.401 5.401 7 C -0.375 4.375 8 H 0.069 0.931 9 C -0.252 4.252 10 N -0.631 5.631 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.219 1.219 14 H -0.181 1.181 15 C 0.324 3.676 16 O -0.450 6.450 17 C -0.153 4.153 18 C -0.115 4.115 19 C -0.224 4.224 20 C -0.210 4.210 21 C -0.215 4.215 22 C -0.192 4.192 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.166 0.834 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.201 0.799 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.172 0.828 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.723 -10.551 -22.093 28.569 hybrid contribution 0.079 1.211 1.042 1.599 sum -14.644 -9.341 -21.051 27.292 Atomic orbital electron populations 1.22339 0.94210 1.04491 1.02465 1.23440 0.96233 0.81383 1.07435 1.47896 1.63499 1.15291 1.06655 1.21352 0.96906 0.96742 0.85402 1.20923 0.96172 0.94537 0.85919 1.42509 1.16574 1.57752 1.23219 1.18980 0.94072 1.23899 1.00568 0.93082 1.25559 1.00766 1.01700 0.97125 1.69887 1.30915 1.47235 1.15108 0.85340 0.79250 0.78345 0.78435 1.19275 1.21878 1.18130 1.20326 0.76182 0.86057 0.85026 1.90653 1.46278 1.21443 1.86656 1.20882 1.11354 0.91439 0.91648 1.21542 1.04107 0.89764 0.96056 1.23086 0.92628 1.03944 1.02787 1.22882 0.97862 0.97900 1.02390 1.24794 0.92347 0.96156 1.08215 1.23493 0.98625 0.91766 1.05343 0.92658 0.91127 0.87934 0.90408 0.83413 0.91904 0.88190 0.94976 0.98193 0.79861 0.93039 0.84206 0.90373 0.88004 0.87339 0.91174 0.82815 0.85699 0.85407 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.70 71.98 0.63 -1.57 16 2 C 0.04 0.60 5.14 86.38 0.44 1.04 16 3 N -0.60 -16.08 2.49 -821.80 -2.05 -18.13 16 4 C 0.12 3.95 5.48 86.38 0.47 4.42 16 5 C 0.15 6.46 6.58 86.38 0.57 7.03 16 6 N -0.75 -38.04 5.41 -343.46 -1.86 -39.90 16 7 C -0.24 -14.86 10.47 84.03 0.88 -13.98 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 10 N -0.98 -64.76 13.97 21.65 0.30 -64.46 16 11 Si 0.96 46.76 27.74 68.60 1.90 48.66 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 15 C 0.53 15.98 7.13 87.66 0.62 16.60 16 16 O -0.57 -22.36 11.57 -3.03 -0.04 -22.40 16 17 C -0.15 -3.07 2.47 -52.93 -0.13 -3.20 16 18 C -0.10 -1.95 5.85 -10.79 -0.06 -2.01 16 19 C -0.19 -4.86 9.66 30.62 0.30 -4.57 16 20 C -0.17 -4.17 9.68 30.62 0.30 -3.87 16 21 C -0.18 -2.07 8.89 30.59 0.27 -1.80 16 22 C -0.16 -2.08 9.05 30.59 0.28 -1.80 16 23 H 0.05 0.81 7.86 -2.39 -0.02 0.80 16 24 H 0.07 0.88 6.79 -2.39 -0.02 0.86 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.15 1.90 1.87 -3.18 -0.01 1.90 16 28 H 0.06 2.34 7.46 -2.39 -0.02 2.32 16 29 H 0.10 2.80 7.79 -2.39 -0.02 2.78 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.37 17.37 5.53 -92.71 -0.51 16.86 16 33 H 0.26 16.23 8.31 -92.72 -0.77 15.46 16 34 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.69 5.95 -2.39 -0.01 2.68 16 36 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.12 6.61 -2.39 -0.02 2.11 16 39 H 0.15 1.58 1.78 -2.65 0.00 1.58 16 40 H 0.12 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.11 1.56 6.18 -2.39 -0.01 1.55 16 Total: -1.00 -79.18 323.98 3.75 -75.43 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.45 Total: 27.67 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.03 Total: -6.88 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -3.60 Total: -122.48 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Total: -79.18 3.75 -75.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273441179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.254 kcal (2) G-P(sol) polarization free energy of solvation -79.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds