Wall clock time and date at job start Mon Mar 30 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99928 * 2 1 4 4 H 1.07994 * 119.99634 * 203.86328 * 3 2 1 5 5 C 1.38813 * 119.99460 * 23.86715 * 3 2 1 6 6 N 1.31612 * 120.00431 * 15.25932 * 5 3 2 7 7 Si 1.86798 * 119.99552 * 195.25545 * 5 3 2 8 8 H 1.48497 * 109.47128 * 90.00164 * 7 5 3 9 9 H 1.48502 * 109.47113 * 210.00259 * 7 5 3 10 10 H 1.48503 * 109.47366 * 330.00113 * 7 5 3 11 11 C 1.46501 * 120.00080 * 180.02562 * 2 1 3 12 12 C 1.53010 * 109.47099 * 269.99817 * 11 2 1 13 13 C 1.52992 * 109.46915 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.47114 * 179.97438 * 13 12 11 15 15 C 1.46495 * 119.99757 * 90.00033 * 14 13 12 16 16 C 1.34781 * 120.00035 * 269.73145 * 14 13 12 17 17 O 1.21279 * 119.99851 * 5.45100 * 16 14 13 18 18 C 1.50698 * 119.99839 * 185.45278 * 16 14 13 19 19 C 1.54635 * 111.03803 * 281.44287 * 18 16 14 20 20 C 1.51101 * 104.72126 * 217.33298 * 19 18 16 21 21 C 1.30530 * 111.10766 * 16.43516 * 20 19 18 22 22 C 1.51099 * 111.10285 * 0.02562 * 21 20 19 23 23 H 1.08995 * 109.47061 * 274.00339 * 1 2 3 24 24 H 1.08999 * 109.47551 * 34.01110 * 1 2 3 25 25 H 1.09001 * 109.46845 * 154.00997 * 1 2 3 26 26 H 0.96999 * 120.00220 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.47284 * 150.00576 * 11 2 1 28 28 H 1.08991 * 109.47453 * 29.99763 * 11 2 1 29 29 H 1.09000 * 109.46432 * 60.00238 * 12 11 2 30 30 H 1.08991 * 109.46924 * 300.00270 * 12 11 2 31 31 H 1.09003 * 109.47221 * 60.00349 * 13 12 11 32 32 H 1.08998 * 109.47540 * 300.00362 * 13 12 11 33 33 H 1.09000 * 109.47136 * 88.41523 * 15 14 13 34 34 H 1.09004 * 109.47469 * 208.41505 * 15 14 13 35 35 H 1.09004 * 109.47524 * 328.40894 * 15 14 13 36 36 H 1.09009 * 110.91196 * 45.44927 * 18 16 14 37 37 H 1.08997 * 110.38599 * 336.13915 * 19 18 16 38 38 H 1.09000 * 110.38864 * 98.52206 * 19 18 16 39 39 H 1.08000 * 124.44473 * 196.45212 * 20 19 18 40 40 H 1.07997 * 124.44930 * 180.02562 * 21 20 19 41 41 H 1.08999 * 110.38616 * 224.75206 * 22 21 20 42 42 H 1.08996 * 110.48439 * 102.41892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1604 1.2259 -0.3784 5 6 1.5445 2.3366 0.4864 6 7 0.4512 2.2481 1.2138 7 14 2.2820 4.0108 0.1087 8 1 1.6988 4.5356 -1.1521 9 1 1.9802 4.9471 1.2211 10 1 3.7535 3.8806 -0.0432 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 6 3.2170 -3.0363 1.4412 14 7 3.4618 -3.4595 2.8222 15 6 2.4851 -4.3050 3.5132 16 6 4.5880 -3.0755 3.4552 17 8 5.3508 -2.3002 2.9187 18 6 4.8994 -3.6095 4.8296 19 6 4.0756 -2.8727 5.9112 20 6 5.0144 -2.7453 7.0883 21 6 6.2516 -2.9526 6.7275 22 6 6.3443 -3.2522 5.2494 23 1 -0.3633 0.0717 1.0251 24 1 -0.3634 0.8518 -0.5748 25 1 -0.3633 -0.9238 -0.4503 26 1 0.0286 3.0522 1.5540 27 1 3.1500 -1.1381 -0.5142 28 1 1.6085 -2.0281 -0.5146 29 1 1.5001 -1.8416 1.9555 30 1 3.0416 -0.9516 1.9559 31 1 4.1694 -2.9062 0.9273 32 1 2.6276 -3.7955 0.9271 33 1 2.7102 -5.3536 3.3185 34 1 2.5348 -4.1158 4.5855 35 1 1.4836 -4.0748 3.1498 36 1 4.7329 -4.6858 4.8757 37 1 3.7773 -1.8867 5.5551 38 1 3.1991 -3.4594 6.1862 39 1 4.7026 -2.5135 8.0960 40 1 7.0978 -2.9150 7.3975 41 1 7.0100 -4.0973 5.0743 42 1 6.6931 -2.3755 4.7037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273495638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:30 Heat of formation + Delta-G solvation = 3.428726 kcal Electronic energy + Delta-G solvation = -20577.889050 eV Core-core repulsion = 17559.052713 eV Total energy + Delta-G solvation = -3018.836337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32422 -37.77031 -36.11132 -35.22755 -32.30476 -30.52936 -29.27364 -28.30817 -26.88970 -25.86063 -25.23645 -22.64370 -21.24180 -20.13795 -19.02030 -18.74342 -17.26115 -16.62638 -16.42457 -15.65653 -15.07171 -14.67114 -14.41496 -13.83412 -13.36413 -13.17774 -12.93377 -12.87119 -12.66298 -12.47267 -12.30314 -12.04128 -11.78182 -11.50492 -11.31397 -11.26486 -11.20153 -10.88163 -10.77209 -10.61902 -10.39692 -9.99232 -9.85078 -9.64685 -9.56071 -9.00986 -8.52207 -8.42867 -6.65199 -5.65554 -3.10500 2.12369 2.74783 3.13323 3.44719 3.50534 3.52911 4.34960 4.47693 4.58584 4.67257 4.95946 5.09013 5.14253 5.31118 5.41052 5.47510 5.49205 5.49679 5.57671 5.61820 5.69083 5.77454 5.85693 5.89813 6.07191 6.15685 6.19965 6.30776 6.38354 6.53971 6.73271 6.74114 6.81810 6.98031 7.24373 7.38380 7.53008 7.75752 7.89763 8.33818 8.49346 9.31917 9.95699 10.45167 11.40065 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.004569 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.213039 B = 6126.128396 C = 6794.896681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.601 5.601 3 C -0.252 4.252 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.149 4.149 13 C 0.116 3.884 14 N -0.614 5.614 15 C 0.075 3.925 16 C 0.519 3.481 17 O -0.531 6.531 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.169 4.169 21 C -0.162 4.162 22 C -0.090 4.090 23 H 0.027 0.973 24 H 0.039 0.961 25 H -0.002 1.002 26 H 0.251 0.749 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -16.380 9.307 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.006 4.006 14 N -0.347 5.347 15 C -0.069 4.069 16 C 0.306 3.694 17 O -0.407 6.407 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.187 4.187 21 C -0.180 4.180 22 C -0.128 4.128 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.090 0.910 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.762 -15.827 9.046 19.119 hybrid contribution 0.132 0.933 0.141 0.953 sum 5.894 -14.894 9.186 18.465 Atomic orbital electron populations 1.20756 0.82833 0.95507 0.99125 1.43973 1.01771 1.00823 1.85820 1.19229 0.98941 0.85567 1.34402 0.91425 1.25006 0.98294 0.98515 0.97865 1.70068 1.21696 1.27192 1.36340 0.86282 0.78818 0.84296 0.77392 1.21528 1.21828 1.20414 1.20750 0.95664 0.88087 0.92743 1.22593 0.99313 0.95225 1.01881 1.21638 1.01133 0.97118 0.80742 1.47908 1.20367 1.51390 1.15042 1.21866 0.93126 0.93955 0.97927 1.20354 0.80861 0.81000 0.87154 1.90709 1.48765 1.33924 1.67282 1.22167 0.97835 1.01098 0.92487 1.21353 0.97670 1.01168 0.92473 1.23209 0.95255 1.01620 0.98578 1.23288 0.97562 1.00648 0.96494 1.21330 0.94801 1.03008 0.93627 0.95436 0.94205 0.98356 0.93898 0.93823 0.94690 0.92960 0.91454 0.90379 0.91215 0.92899 0.90926 0.90740 0.88243 0.89842 0.90381 0.85594 0.85664 0.90992 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 9.04 59.85 0.54 4.66 16 2 N -0.60 -15.84 2.92 -181.12 -0.53 -16.36 16 3 C -0.25 -7.28 9.63 -15.06 -0.15 -7.43 16 4 H 0.07 1.95 7.87 -52.49 -0.41 1.53 16 5 C 0.00 0.04 5.04 -17.43 -0.09 -0.05 16 6 N -0.91 -27.42 10.90 55.49 0.61 -26.82 16 7 Si 0.90 22.84 29.58 -169.99 -5.03 17.81 16 8 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.16 3.32 5.71 -4.04 -0.02 3.30 16 12 C -0.15 -2.95 5.86 -26.73 -0.16 -3.11 16 13 C 0.12 1.81 5.38 -4.04 -0.02 1.79 16 14 N -0.61 -8.62 2.87 -181.57 -0.52 -9.14 16 15 C 0.07 0.73 10.00 59.84 0.60 1.33 16 16 C 0.52 8.00 6.87 -10.98 -0.08 7.93 16 17 O -0.53 -10.50 15.13 5.56 0.08 -10.42 16 18 C -0.11 -1.32 2.54 -90.04 -0.23 -1.55 16 19 C -0.09 -0.97 5.55 -26.83 -0.15 -1.12 16 20 C -0.17 -1.69 10.77 -35.70 -0.38 -2.07 16 21 C -0.16 -1.63 10.77 -35.70 -0.38 -2.02 16 22 C -0.09 -1.04 6.26 -26.82 -0.17 -1.21 16 23 H 0.03 0.75 7.38 -51.93 -0.38 0.37 16 24 H 0.04 1.07 7.38 -51.93 -0.38 0.69 16 25 H 0.00 -0.05 7.85 -51.93 -0.41 -0.45 16 26 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.04 0.93 8.03 -51.93 -0.42 0.52 16 28 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 32 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.62 4.90 -51.93 -0.25 0.36 16 35 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.10 0.91 7.77 -51.92 -0.40 0.51 16 37 H 0.08 1.12 7.88 -51.93 -0.41 0.71 16 38 H 0.08 0.68 6.83 -51.93 -0.35 0.32 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.39 6.86 -51.93 -0.36 1.03 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -33.84 337.43 -8.08 -41.92 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.09 Total: -2.53 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.68 Total: 0.46 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.45 Total: -52.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.84 -8.08 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273495638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.344 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds