Wall clock time and date at job start Mon Mar 30 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99928 * 2 1 4 4 H 1.07994 * 119.99634 * 203.86328 * 3 2 1 5 5 C 1.38813 * 119.99460 * 23.86715 * 3 2 1 6 6 N 1.31612 * 120.00431 * 15.25932 * 5 3 2 7 7 Si 1.86798 * 119.99552 * 195.25545 * 5 3 2 8 8 H 1.48497 * 109.47128 * 90.00164 * 7 5 3 9 9 H 1.48502 * 109.47113 * 210.00259 * 7 5 3 10 10 H 1.48503 * 109.47366 * 330.00113 * 7 5 3 11 11 C 1.46501 * 120.00080 * 180.02562 * 2 1 3 12 12 C 1.53010 * 109.47099 * 269.99817 * 11 2 1 13 13 C 1.52992 * 109.46915 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.47114 * 179.97438 * 13 12 11 15 15 C 1.46495 * 119.99757 * 90.00033 * 14 13 12 16 16 C 1.34781 * 120.00035 * 269.73145 * 14 13 12 17 17 O 1.21279 * 119.99851 * 5.45100 * 16 14 13 18 18 C 1.50698 * 119.99839 * 185.45278 * 16 14 13 19 19 C 1.54635 * 111.03803 * 281.44287 * 18 16 14 20 20 C 1.51101 * 104.72126 * 217.33298 * 19 18 16 21 21 C 1.30530 * 111.10766 * 16.43516 * 20 19 18 22 22 C 1.51099 * 111.10285 * 0.02562 * 21 20 19 23 23 H 1.08995 * 109.47061 * 274.00339 * 1 2 3 24 24 H 1.08999 * 109.47551 * 34.01110 * 1 2 3 25 25 H 1.09001 * 109.46845 * 154.00997 * 1 2 3 26 26 H 0.96999 * 120.00220 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.47284 * 150.00576 * 11 2 1 28 28 H 1.08991 * 109.47453 * 29.99763 * 11 2 1 29 29 H 1.09000 * 109.46432 * 60.00238 * 12 11 2 30 30 H 1.08991 * 109.46924 * 300.00270 * 12 11 2 31 31 H 1.09003 * 109.47221 * 60.00349 * 13 12 11 32 32 H 1.08998 * 109.47540 * 300.00362 * 13 12 11 33 33 H 1.09000 * 109.47136 * 88.41523 * 15 14 13 34 34 H 1.09004 * 109.47469 * 208.41505 * 15 14 13 35 35 H 1.09004 * 109.47524 * 328.40894 * 15 14 13 36 36 H 1.09009 * 110.91196 * 45.44927 * 18 16 14 37 37 H 1.08997 * 110.38599 * 336.13915 * 19 18 16 38 38 H 1.09000 * 110.38864 * 98.52206 * 19 18 16 39 39 H 1.08000 * 124.44473 * 196.45212 * 20 19 18 40 40 H 1.07997 * 124.44930 * 180.02562 * 21 20 19 41 41 H 1.08999 * 110.38616 * 224.75206 * 22 21 20 42 42 H 1.08996 * 110.48439 * 102.41892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1604 1.2259 -0.3784 5 6 1.5445 2.3366 0.4864 6 7 0.4512 2.2481 1.2138 7 14 2.2820 4.0108 0.1087 8 1 1.6988 4.5356 -1.1521 9 1 1.9802 4.9471 1.2211 10 1 3.7535 3.8806 -0.0432 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 6 3.2170 -3.0363 1.4412 14 7 3.4618 -3.4595 2.8222 15 6 2.4851 -4.3050 3.5132 16 6 4.5880 -3.0755 3.4552 17 8 5.3508 -2.3002 2.9187 18 6 4.8994 -3.6095 4.8296 19 6 4.0756 -2.8727 5.9112 20 6 5.0144 -2.7453 7.0883 21 6 6.2516 -2.9526 6.7275 22 6 6.3443 -3.2522 5.2494 23 1 -0.3633 0.0717 1.0251 24 1 -0.3634 0.8518 -0.5748 25 1 -0.3633 -0.9238 -0.4503 26 1 0.0286 3.0522 1.5540 27 1 3.1500 -1.1381 -0.5142 28 1 1.6085 -2.0281 -0.5146 29 1 1.5001 -1.8416 1.9555 30 1 3.0416 -0.9516 1.9559 31 1 4.1694 -2.9062 0.9273 32 1 2.6276 -3.7955 0.9271 33 1 2.7102 -5.3536 3.3185 34 1 2.5348 -4.1158 4.5855 35 1 1.4836 -4.0748 3.1498 36 1 4.7329 -4.6858 4.8757 37 1 3.7773 -1.8867 5.5551 38 1 3.1991 -3.4594 6.1862 39 1 4.7026 -2.5135 8.0960 40 1 7.0978 -2.9150 7.3975 41 1 7.0100 -4.0973 5.0743 42 1 6.6931 -2.3755 4.7037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273495638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:30 Heat of formation + Delta-G solvation = -17.239690 kcal Electronic energy + Delta-G solvation = -20578.785300 eV Core-core repulsion = 17559.052713 eV Total energy + Delta-G solvation = -3019.732587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42485 -38.78157 -37.83141 -36.70389 -34.10702 -32.26516 -30.39921 -29.19015 -28.05814 -27.83837 -26.76186 -24.23965 -22.49700 -21.90961 -19.96751 -19.70098 -18.80763 -18.28021 -17.44098 -16.93347 -16.53743 -16.18958 -15.94665 -15.55030 -14.93305 -14.66143 -14.51557 -14.08741 -13.88454 -13.49351 -13.36192 -13.20721 -13.07136 -12.86529 -12.74863 -12.70056 -12.56178 -12.44733 -12.26618 -12.15121 -12.06739 -12.03469 -11.91690 -11.42519 -10.82343 -10.67016 -9.83004 -9.67546 -8.78121 -7.87430 -5.34933 1.33719 1.41601 1.42409 1.51707 1.57997 2.05587 2.48309 3.25512 3.41157 3.60346 3.68871 3.79398 4.06006 4.17429 4.28542 4.35446 4.37655 4.53740 4.54237 4.62418 4.68428 4.74820 4.75009 4.76859 4.85746 4.86958 4.90972 4.96094 5.07079 5.14808 5.26268 5.29016 5.43333 5.57730 5.61693 5.64159 5.68662 5.97691 6.31407 6.41907 7.12924 7.17678 7.85940 8.27911 9.16028 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.004569 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.213039 B = 6126.128396 C = 6794.896681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.620 5.620 3 C -0.266 4.266 4 H 0.061 0.939 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.964 3.036 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.274 1.274 11 C 0.151 3.849 12 C -0.129 4.129 13 C 0.125 3.875 14 N -0.615 5.615 15 C 0.067 3.933 16 C 0.509 3.491 17 O -0.588 6.588 18 C -0.107 4.107 19 C -0.090 4.090 20 C -0.170 4.170 21 C -0.165 4.165 22 C -0.096 4.096 23 H 0.002 0.998 24 H 0.013 0.987 25 H 0.040 0.960 26 H 0.249 0.751 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.012 0.988 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -18.699 10.049 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.343 5.343 3 C -0.396 4.396 4 H 0.079 0.921 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.792 3.208 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.200 1.200 11 C 0.025 3.975 12 C -0.170 4.170 13 C 0.002 3.998 14 N -0.346 5.346 15 C -0.075 4.075 16 C 0.298 3.702 17 O -0.469 6.469 18 C -0.128 4.128 19 C -0.128 4.128 20 C -0.188 4.188 21 C -0.183 4.183 22 C -0.133 4.133 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.106 0.894 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.519 -18.201 9.794 21.393 hybrid contribution 0.197 1.592 -0.113 1.608 sum 5.716 -16.609 9.680 20.056 Atomic orbital electron populations 1.20546 0.82493 0.96408 0.97484 1.44243 1.02354 1.01759 1.85981 1.19477 0.98910 0.87189 1.34056 0.92115 1.25751 0.99000 1.01821 0.98046 1.70214 1.22901 1.27740 1.37352 0.85311 0.78212 0.80021 0.77229 1.20596 1.21874 1.19951 1.20938 0.95617 0.87109 0.93834 1.22280 0.98604 0.96131 0.99972 1.21441 1.00225 0.95832 0.82327 1.48038 1.20781 1.51243 1.14580 1.22183 0.92060 0.94833 0.98390 1.21145 0.80564 0.80155 0.88355 1.90682 1.50770 1.36517 1.68885 1.22218 0.97853 1.02798 0.89943 1.21376 0.99016 0.99769 0.92601 1.23400 0.94919 1.01299 0.99141 1.23431 0.98463 1.00737 0.95647 1.21346 0.95268 1.02217 0.94500 0.97990 0.96787 0.94197 0.94235 0.94336 0.90922 0.93392 0.96923 0.92005 0.87126 0.89664 0.89537 0.90403 0.84760 0.93250 0.87552 0.83472 0.83625 0.89367 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.90 9.04 127.77 1.15 10.06 16 2 N -0.62 -32.94 2.92 -726.94 -2.12 -35.06 16 3 C -0.27 -15.73 9.63 84.03 0.81 -14.92 16 4 H 0.06 3.59 7.87 -2.91 -0.02 3.57 16 5 C -0.05 -3.02 5.04 84.86 0.43 -2.60 16 6 N -0.94 -57.86 10.90 21.65 0.24 -57.62 16 7 Si 0.96 47.83 29.58 68.60 2.03 49.85 16 8 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 10 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 11 C 0.15 6.40 5.71 86.38 0.49 6.89 16 12 C -0.13 -5.15 5.86 30.59 0.18 -4.97 16 13 C 0.13 3.76 5.38 86.38 0.46 4.22 16 14 N -0.62 -16.47 2.87 -846.76 -2.43 -18.91 16 15 C 0.07 1.09 10.00 127.77 1.28 2.37 16 16 C 0.51 15.76 6.87 87.66 0.60 16.36 16 17 O -0.59 -24.59 15.13 -3.03 -0.05 -24.64 16 18 C -0.11 -2.32 2.54 -10.42 -0.03 -2.34 16 19 C -0.09 -1.84 5.55 30.53 0.17 -1.67 16 20 C -0.17 -3.05 10.77 26.26 0.28 -2.77 16 21 C -0.17 -3.05 10.77 26.26 0.28 -2.77 16 22 C -0.10 -2.17 6.26 30.54 0.19 -1.98 16 23 H 0.00 0.10 7.38 -2.39 -0.02 0.08 16 24 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 25 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 26 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 28 H 0.07 2.53 7.86 -2.39 -0.02 2.51 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 2.08 7.49 -2.39 -0.02 2.06 16 32 H 0.11 2.46 8.07 -2.39 -0.02 2.44 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.17 4.90 -2.38 -0.01 1.16 16 35 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.13 1.97 7.77 -2.38 -0.02 1.95 16 37 H 0.05 1.35 7.88 -2.39 -0.02 1.34 16 38 H 0.11 1.52 6.83 -2.39 -0.02 1.50 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.87 6.86 -2.39 -0.02 1.85 16 Total: -1.00 -77.60 337.43 4.95 -72.65 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.97 Total: 7.85 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.31 Total: 5.87 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.32 Total: -111.59 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.85 kcal Total: -77.60 4.95 -72.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273495638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.413 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds