Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46981 * 111.00189 * 2 1 4 4 C 1.53032 * 109.47410 * 184.60430 * 3 2 1 5 5 C 1.53121 * 109.38597 * 300.22899 * 4 3 2 6 6 C 1.53257 * 109.07025 * 58.25694 * 5 4 3 7 7 C 1.45982 * 110.99720 * 124.39101 * 2 1 3 8 8 C 1.53981 * 110.67148 * 299.47184 * 7 2 1 9 9 C 1.51435 * 104.05218 * 94.03063 * 8 7 2 10 10 O 1.21286 * 124.94777 * 195.70120 * 9 8 7 11 11 N 1.34509 * 110.11070 * 15.72496 * 9 8 7 12 12 C 1.46499 * 124.34919 * 180.36553 * 11 9 8 13 13 C 1.53000 * 109.46840 * 90.02719 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00636 * 18 16 14 20 20 H 1.48494 * 109.47178 * 210.00332 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00579 * 18 16 14 22 22 C 1.46917 * 111.29715 * 0.63298 * 11 9 8 23 23 H 1.08999 * 109.47208 * 295.61130 * 1 2 3 24 24 H 1.09004 * 109.46937 * 55.61130 * 1 2 3 25 25 H 1.09003 * 109.46950 * 175.61125 * 1 2 3 26 26 H 1.09001 * 109.46856 * 304.60379 * 3 2 1 27 27 H 1.08999 * 109.47511 * 64.59971 * 3 2 1 28 28 H 1.09000 * 109.48810 * 60.20631 * 4 3 2 29 29 H 1.09002 * 109.48513 * 180.23465 * 4 3 2 30 30 H 1.09002 * 109.54034 * 178.13709 * 5 4 3 31 31 H 1.09003 * 109.53735 * 298.30006 * 5 4 3 32 32 H 1.09007 * 109.48811 * 183.57996 * 6 5 4 33 33 H 1.09005 * 109.48883 * 63.51641 * 6 5 4 34 34 H 1.08992 * 110.51435 * 335.38878 * 8 7 2 35 35 H 1.09001 * 110.62915 * 212.72928 * 8 7 2 36 36 H 1.09002 * 109.47391 * 330.02389 * 12 11 9 37 37 H 1.09001 * 109.46813 * 210.02445 * 12 11 9 38 38 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 40 40 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 41 41 H 1.08994 * 110.27353 * 102.28072 * 22 11 9 42 42 H 1.09002 * 110.26442 * 224.34635 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3722 0.0000 4 6 3.5212 1.3330 -0.1158 5 6 4.1013 0.5575 1.0702 6 6 3.5113 -0.8570 1.0803 7 6 1.9921 -0.7698 1.1247 8 6 1.5251 -0.1649 2.4615 9 6 0.2739 -0.9471 2.8019 10 8 -0.5502 -0.6146 3.6272 11 7 0.2099 -2.0646 2.0560 12 6 -0.8765 -3.0449 2.1273 13 6 -1.9733 -2.6639 1.1309 14 6 -3.0906 -3.6727 1.2038 15 1 -3.0251 -4.5022 1.8923 16 6 -4.1968 -3.5359 0.3923 17 7 -4.2768 -2.5255 -0.4457 18 14 -5.5814 -4.7867 0.4822 19 1 -6.5778 -4.3503 1.4933 20 1 -6.2381 -4.8945 -0.8453 21 1 -5.0291 -6.1095 0.8701 22 6 1.3725 -2.1790 1.1652 23 1 -0.3633 0.4442 0.9267 24 1 -0.3633 0.5805 -0.8481 25 1 -0.3633 -1.0247 -0.0786 26 1 1.5811 1.9205 -0.8459 27 1 1.7145 1.8694 0.9283 28 1 3.8027 0.8392 -1.0459 29 1 3.9124 2.3504 -0.1116 30 1 5.1854 0.4996 0.9729 31 1 3.8454 1.0671 1.9992 32 1 3.8706 -1.3946 1.9579 33 1 3.8191 -1.3858 0.1782 34 1 1.2932 0.8933 2.3416 35 1 2.2838 -0.3038 3.2317 36 1 -1.2899 -3.0565 3.1358 37 1 -0.4900 -4.0340 1.8816 38 1 -2.3598 -1.6748 1.3766 39 1 -1.5600 -2.6523 0.1224 40 1 -5.0553 -2.4291 -1.0163 41 1 2.0871 -2.8972 1.5671 42 1 1.0550 -2.4794 0.1666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273517275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = -34.444193 kcal Electronic energy + Delta-G solvation = -21732.979200 eV Core-core repulsion = 18712.500570 eV Total energy + Delta-G solvation = -3020.478630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20403 -38.14046 -35.61760 -33.68046 -33.49415 -32.08165 -29.72873 -28.30470 -26.80825 -25.77882 -24.29016 -23.06771 -21.64461 -21.13820 -19.17414 -18.42014 -16.97501 -16.27174 -15.88191 -15.44556 -14.91388 -14.61892 -14.46829 -14.43742 -13.99335 -13.52122 -13.13278 -12.94387 -12.71407 -12.53095 -12.20454 -12.16636 -11.98534 -11.69294 -11.48687 -11.43358 -11.18666 -10.94914 -10.73082 -10.68829 -10.53294 -10.34804 -9.99167 -9.85782 -9.38037 -9.11564 -8.37238 -8.22065 -8.00868 -6.02482 -4.05746 3.03953 3.32113 3.37973 3.40457 3.56904 3.85718 4.41244 4.45742 4.49715 4.72336 4.80765 4.91532 5.04730 5.19696 5.28709 5.33894 5.42187 5.55848 5.59039 5.63805 5.74932 5.78677 5.79083 5.85682 5.89802 5.95023 5.96962 6.06669 6.08217 6.27748 6.46043 6.51521 6.80194 6.97386 7.12713 7.18480 7.51154 7.66268 7.85139 7.96539 8.33826 8.68192 9.00562 9.58385 11.08773 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031609 B = 0.005005 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.602484 B = 5593.266605 C = 5905.067490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.521 5.521 3 C 0.050 3.950 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.099 4.099 7 C 0.105 3.895 8 C -0.186 4.186 9 C 0.513 3.487 10 O -0.538 6.538 11 N -0.611 5.611 12 C 0.126 3.874 13 C 0.014 3.986 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.110 3.890 23 H 0.027 0.973 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.375 5.644 0.232 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.078 4.078 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.137 4.137 7 C 0.014 3.986 8 C -0.228 4.228 9 C 0.300 3.700 10 O -0.415 6.415 11 N -0.344 5.344 12 C 0.006 3.994 13 C -0.024 4.024 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.014 4.014 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.904 5.591 0.087 18.757 hybrid contribution -1.214 -0.198 0.654 1.393 sum 16.690 5.393 0.741 17.555 Atomic orbital electron populations 1.22666 0.85466 1.04842 1.00417 1.61870 1.08772 1.13099 1.40741 1.22170 0.95314 0.89494 1.00776 1.21578 0.94585 1.00065 0.99163 1.21610 0.99855 0.95730 0.98678 1.21434 0.91882 0.97515 1.02835 1.21384 0.95453 0.93647 0.88125 1.23035 0.98155 1.01700 0.99952 1.20682 0.86840 0.81830 0.80653 1.90705 1.44579 1.71408 1.34832 1.48626 1.22899 1.23555 1.39342 1.21820 0.86417 0.89179 1.01964 1.19422 0.91938 0.97555 0.93508 1.21083 1.03099 1.10293 1.21699 0.92534 1.24979 0.98289 0.95624 0.95236 1.69962 1.29578 1.29792 1.23701 0.86566 0.82272 0.81679 0.77317 1.20626 1.21205 1.19821 1.22117 0.87675 0.95514 0.96091 0.95419 0.91412 0.88902 0.90510 0.94605 0.90978 0.91711 0.91653 0.92072 0.91075 0.90419 0.88590 0.88020 0.91196 0.91592 0.96142 0.96251 0.92943 0.90867 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 8.26 60.07 0.50 0.72 16 2 N -0.52 -6.98 4.72 -227.00 -1.07 -8.05 16 3 C 0.05 0.56 5.24 -3.76 -0.02 0.54 16 4 C -0.12 -1.01 6.07 -26.65 -0.16 -1.18 16 5 C -0.12 -0.99 5.81 -26.54 -0.15 -1.14 16 6 C -0.10 -0.91 4.65 -26.99 -0.13 -1.03 16 7 C 0.11 1.30 0.72 -131.46 -0.09 1.21 16 8 C -0.19 -2.59 4.44 -27.01 -0.12 -2.71 16 9 C 0.51 9.76 6.27 -10.74 -0.07 9.70 16 10 O -0.54 -12.68 17.59 5.55 0.10 -12.58 16 11 N -0.61 -11.11 2.07 -172.51 -0.36 -11.47 16 12 C 0.13 2.68 5.88 -4.04 -0.02 2.65 16 13 C 0.01 0.35 4.51 -27.88 -0.13 0.22 16 14 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.11 1.55 5.71 -3.30 -0.02 1.53 16 23 H 0.03 0.51 6.05 -51.93 -0.31 0.19 16 24 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 25 H 0.09 1.80 4.19 -51.93 -0.22 1.58 16 26 H 0.08 0.83 8.11 -51.93 -0.42 0.40 16 27 H 0.04 0.41 6.19 -51.93 -0.32 0.09 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 32 H 0.07 0.57 8.06 -51.92 -0.42 0.16 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.35 5.74 -51.93 -0.30 1.05 16 35 H 0.10 1.20 7.81 -51.93 -0.41 0.79 16 36 H 0.07 1.58 7.92 -51.93 -0.41 1.17 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.02 0.51 7.11 -51.93 -0.37 0.15 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 42 H 0.09 1.37 7.37 -51.93 -0.38 0.98 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -32.38 317.65 -8.52 -40.89 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.86 Total: -1.34 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.83 Total: -2.93 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.69 Total: -45.52 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.10 Total: -12.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.38 -8.52 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.450 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds