Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46981 * 111.00189 * 2 1 4 4 C 1.53032 * 109.47410 * 184.60430 * 3 2 1 5 5 C 1.53121 * 109.38597 * 300.22899 * 4 3 2 6 6 C 1.53257 * 109.07025 * 58.25694 * 5 4 3 7 7 C 1.45982 * 110.99720 * 124.39101 * 2 1 3 8 8 C 1.53981 * 110.67148 * 299.47184 * 7 2 1 9 9 C 1.51435 * 104.05218 * 94.03063 * 8 7 2 10 10 O 1.21286 * 124.94777 * 195.70120 * 9 8 7 11 11 N 1.34509 * 110.11070 * 15.72496 * 9 8 7 12 12 C 1.46499 * 124.34919 * 180.36553 * 11 9 8 13 13 C 1.53000 * 109.46840 * 90.02719 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00636 * 18 16 14 20 20 H 1.48494 * 109.47178 * 210.00332 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00579 * 18 16 14 22 22 C 1.46917 * 111.29715 * 0.63298 * 11 9 8 23 23 H 1.08999 * 109.47208 * 295.61130 * 1 2 3 24 24 H 1.09004 * 109.46937 * 55.61130 * 1 2 3 25 25 H 1.09003 * 109.46950 * 175.61125 * 1 2 3 26 26 H 1.09001 * 109.46856 * 304.60379 * 3 2 1 27 27 H 1.08999 * 109.47511 * 64.59971 * 3 2 1 28 28 H 1.09000 * 109.48810 * 60.20631 * 4 3 2 29 29 H 1.09002 * 109.48513 * 180.23465 * 4 3 2 30 30 H 1.09002 * 109.54034 * 178.13709 * 5 4 3 31 31 H 1.09003 * 109.53735 * 298.30006 * 5 4 3 32 32 H 1.09007 * 109.48811 * 183.57996 * 6 5 4 33 33 H 1.09005 * 109.48883 * 63.51641 * 6 5 4 34 34 H 1.08992 * 110.51435 * 335.38878 * 8 7 2 35 35 H 1.09001 * 110.62915 * 212.72928 * 8 7 2 36 36 H 1.09002 * 109.47391 * 330.02389 * 12 11 9 37 37 H 1.09001 * 109.46813 * 210.02445 * 12 11 9 38 38 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 40 40 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 41 41 H 1.08994 * 110.27353 * 102.28072 * 22 11 9 42 42 H 1.09002 * 110.26442 * 224.34635 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3722 0.0000 4 6 3.5212 1.3330 -0.1158 5 6 4.1013 0.5575 1.0702 6 6 3.5113 -0.8570 1.0803 7 6 1.9921 -0.7698 1.1247 8 6 1.5251 -0.1649 2.4615 9 6 0.2739 -0.9471 2.8019 10 8 -0.5502 -0.6146 3.6272 11 7 0.2099 -2.0646 2.0560 12 6 -0.8765 -3.0449 2.1273 13 6 -1.9733 -2.6639 1.1309 14 6 -3.0906 -3.6727 1.2038 15 1 -3.0251 -4.5022 1.8923 16 6 -4.1968 -3.5359 0.3923 17 7 -4.2768 -2.5255 -0.4457 18 14 -5.5814 -4.7867 0.4822 19 1 -6.5778 -4.3503 1.4933 20 1 -6.2381 -4.8945 -0.8453 21 1 -5.0291 -6.1095 0.8701 22 6 1.3725 -2.1790 1.1652 23 1 -0.3633 0.4442 0.9267 24 1 -0.3633 0.5805 -0.8481 25 1 -0.3633 -1.0247 -0.0786 26 1 1.5811 1.9205 -0.8459 27 1 1.7145 1.8694 0.9283 28 1 3.8027 0.8392 -1.0459 29 1 3.9124 2.3504 -0.1116 30 1 5.1854 0.4996 0.9729 31 1 3.8454 1.0671 1.9992 32 1 3.8706 -1.3946 1.9579 33 1 3.8191 -1.3858 0.1782 34 1 1.2932 0.8933 2.3416 35 1 2.2838 -0.3038 3.2317 36 1 -1.2899 -3.0565 3.1358 37 1 -0.4900 -4.0340 1.8816 38 1 -2.3598 -1.6748 1.3766 39 1 -1.5600 -2.6523 0.1224 40 1 -5.0553 -2.4291 -1.0163 41 1 2.0871 -2.8972 1.5671 42 1 1.0550 -2.4794 0.1666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273517275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = -56.355482 kcal Electronic energy + Delta-G solvation = -21733.929345 eV Core-core repulsion = 18712.500570 eV Total energy + Delta-G solvation = -3021.428775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.42509 -39.45054 -37.15331 -35.52140 -34.47616 -33.69142 -31.28271 -29.63130 -27.97144 -27.25737 -25.97029 -23.98304 -23.28384 -22.34143 -20.54462 -19.55489 -18.75916 -17.86796 -17.27128 -16.63495 -16.52306 -16.17653 -15.76347 -15.64314 -15.08653 -14.81577 -14.54246 -14.38054 -14.13605 -13.88045 -13.75563 -13.39663 -13.21363 -13.11004 -12.89357 -12.76505 -12.59126 -12.57571 -12.28453 -11.97861 -11.87142 -11.46502 -11.40721 -11.30178 -11.12320 -10.82725 -10.59855 -9.60677 -9.36345 -8.23820 -6.36478 1.38332 1.40496 1.50827 1.54502 2.11478 2.40839 2.77903 3.09813 3.30295 3.41274 3.79228 3.84749 4.04286 4.20228 4.25649 4.31704 4.37201 4.38811 4.47424 4.50461 4.60942 4.64326 4.71546 4.75428 4.86929 4.90859 4.98893 5.03466 5.12412 5.16802 5.28334 5.31947 5.36018 5.46168 5.56562 5.57045 5.79993 5.97467 6.13932 6.16230 6.25311 6.78431 7.16023 7.33245 8.87987 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031609 B = 0.005005 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.602484 B = 5593.266605 C = 5905.067490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.520 5.520 3 C 0.045 3.955 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.093 4.093 7 C 0.111 3.889 8 C -0.171 4.171 9 C 0.499 3.501 10 O -0.596 6.596 11 N -0.613 5.613 12 C 0.139 3.861 13 C 0.030 3.970 14 C -0.547 4.547 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.968 3.032 19 H -0.278 1.278 20 H -0.280 1.280 21 H -0.257 1.257 22 C 0.104 3.896 23 H 0.001 0.999 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.052 0.948 37 H 0.091 0.909 38 H -0.028 1.028 39 H 0.004 0.996 40 H 0.264 0.736 41 H 0.111 0.889 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.060 4.811 0.178 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.243 5.243 3 C -0.082 4.082 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.131 4.131 7 C 0.020 3.980 8 C -0.212 4.212 9 C 0.288 3.712 10 O -0.478 6.478 11 N -0.344 5.344 12 C 0.017 3.983 13 C -0.008 4.008 14 C -0.585 4.585 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.792 3.208 19 H -0.203 1.203 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.018 4.018 23 H 0.020 0.980 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.070 0.930 37 H 0.110 0.890 38 H -0.010 1.010 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.646 4.750 0.011 21.186 hybrid contribution -2.058 0.110 0.625 2.154 sum 18.588 4.860 0.636 19.223 Atomic orbital electron populations 1.22391 0.88246 1.02427 0.99090 1.61923 1.06134 1.14907 1.41341 1.22318 0.97461 0.87838 1.00583 1.21572 0.92043 1.01490 0.99697 1.21640 1.01166 0.94620 0.98270 1.21487 0.88347 0.98869 1.04389 1.21569 0.97848 0.91930 0.86696 1.23038 0.95930 1.00601 1.01659 1.21658 0.87851 0.82023 0.79666 1.90658 1.47049 1.72640 1.37427 1.48665 1.23139 1.22827 1.39794 1.21412 0.86448 0.91074 0.99342 1.19171 0.93053 0.94687 0.93856 1.21553 1.04109 1.10939 1.21918 0.91671 1.25970 1.01163 0.97711 0.94645 1.70107 1.30550 1.31752 1.24533 0.85406 0.78513 0.79372 0.77499 1.20335 1.20491 1.18132 1.22467 0.86712 0.97789 0.94849 0.98016 0.91338 0.92005 0.90592 0.95034 0.90873 0.89884 0.89241 0.91905 0.88821 0.89568 0.88751 0.84790 0.92995 0.89027 1.00981 0.97794 0.92741 0.87142 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.26 127.69 1.05 2.00 16 2 N -0.52 -13.55 4.72 -872.10 -4.12 -17.67 16 3 C 0.05 0.93 5.24 86.30 0.45 1.39 16 4 C -0.11 -1.55 6.07 30.65 0.19 -1.36 16 5 C -0.12 -1.41 5.81 30.72 0.18 -1.23 16 6 C -0.09 -1.31 4.65 30.43 0.14 -1.17 16 7 C 0.11 2.52 0.72 4.11 0.00 2.53 16 8 C -0.17 -4.51 4.44 30.41 0.14 -4.38 16 9 C 0.50 19.47 6.27 87.93 0.55 20.02 16 10 O -0.60 -29.62 17.59 -3.05 -0.05 -29.68 16 11 N -0.61 -22.67 2.07 -818.23 -1.70 -24.36 16 12 C 0.14 6.08 5.88 86.38 0.51 6.59 16 13 C 0.03 1.65 4.51 29.85 0.13 1.79 16 14 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.00 0.20 5.46 84.66 0.46 0.67 16 17 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 18 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 C 0.10 2.79 5.71 86.63 0.49 3.28 16 23 H 0.00 0.05 6.05 -2.39 -0.01 0.04 16 24 H 0.07 2.32 8.11 -2.39 -0.02 2.30 16 25 H 0.06 2.56 4.19 -2.39 -0.01 2.55 16 26 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 27 H 0.03 0.69 6.19 -2.39 -0.01 0.68 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.76 7.58 -2.39 -0.02 0.74 16 32 H 0.09 0.98 8.06 -2.38 -0.02 0.96 16 33 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.09 2.58 5.74 -2.39 -0.01 2.57 16 35 H 0.13 2.70 7.81 -2.39 -0.02 2.68 16 36 H 0.05 2.44 7.92 -2.39 -0.02 2.42 16 37 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 38 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 39 H 0.00 0.22 7.11 -2.39 -0.02 0.20 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.11 2.19 7.86 -2.39 -0.02 2.17 16 42 H 0.08 2.33 7.37 -2.39 -0.02 2.32 16 Total: -1.00 -75.11 317.65 1.97 -73.14 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.99 Total: 10.35 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 4.53 Total: -1.37 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -5.53 Total: -99.41 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.11 1.97 -73.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.784 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds