Wall clock time and date at job start Mon Mar 30 2020 01:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46771 * 124.34801 * 2 1 4 4 C 1.54495 * 105.47386 * 196.97133 * 3 2 1 5 5 C 1.54567 * 101.74793 * 334.66271 * 4 3 2 6 6 C 1.50447 * 110.36589 * 144.07503 * 5 4 3 7 7 C 1.54597 * 108.89834 * 213.76472 * 6 5 4 8 8 C 1.45898 * 111.48959 * 283.24837 * 7 6 5 9 9 N 1.47720 * 113.02818 * 61.36679 * 8 7 6 10 10 C 1.46904 * 111.00034 * 153.48885 * 9 8 7 11 11 C 1.50703 * 109.46874 * 66.04816 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.44291 * 109.46445 * 276.36369 * 9 8 7 20 20 C 1.54077 * 111.83818 * 96.48571 * 19 9 8 21 21 C 1.34453 * 124.34795 * 179.97438 * 2 1 3 22 22 O 1.21270 * 124.95910 * 359.56496 * 21 2 1 23 23 H 1.09005 * 109.46956 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47776 * 300.02222 * 1 2 3 25 25 H 1.09000 * 109.47038 * 60.02974 * 1 2 3 26 26 H 1.08992 * 110.24805 * 315.97436 * 3 2 1 27 27 H 1.08998 * 110.24480 * 77.88787 * 3 2 1 28 28 H 1.08996 * 110.97460 * 216.55210 * 4 3 2 29 29 H 1.08998 * 110.97582 * 92.77385 * 4 3 2 30 30 H 1.09004 * 109.56811 * 93.93840 * 6 5 4 31 31 H 1.09004 * 109.56739 * 333.59485 * 6 5 4 32 32 H 1.08997 * 109.07988 * 162.72681 * 7 6 5 33 33 H 1.09004 * 109.07199 * 43.76567 * 7 6 5 34 34 H 1.08992 * 108.77757 * 300.45269 * 8 7 6 35 35 H 1.09001 * 108.77181 * 182.28227 * 8 7 6 36 36 H 1.09003 * 109.47066 * 306.05093 * 10 9 8 37 37 H 1.08996 * 109.47319 * 186.04565 * 10 9 8 38 38 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 39 39 H 1.08994 * 109.01012 * 217.09237 * 19 9 8 40 40 H 1.08994 * 109.00519 * 335.88119 * 19 9 8 41 41 H 1.08995 * 108.93003 * 198.29114 * 20 19 9 42 42 H 1.09004 * 108.85833 * 79.65276 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7015 0.7486 -0.4346 5 6 3.6888 -0.7376 -0.0103 6 6 4.4517 -1.5720 -1.0028 7 6 3.7841 -2.9626 -1.1060 8 6 4.1176 -3.8020 0.0398 9 7 3.6557 -3.2369 1.3241 10 6 3.4265 -4.2978 2.3140 11 6 4.7387 -4.9524 2.6616 12 1 5.6515 -4.6144 2.1936 13 6 4.7738 -5.9835 3.5763 14 7 3.6622 -6.3954 4.1458 15 14 6.4004 -6.7943 4.0077 16 1 6.6450 -7.9337 3.0871 17 1 6.3507 -7.2901 5.4066 18 1 7.4985 -5.8039 3.8722 19 6 4.6240 -2.2813 1.8050 20 6 4.2412 -0.8376 1.4269 21 6 2.2236 -1.1101 0.0005 22 8 1.7951 -2.2445 0.0086 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5141 0.8897 25 1 -0.3633 0.5134 -0.8903 26 1 1.8989 1.9381 -0.7107 27 1 2.3288 1.6442 0.9999 28 1 4.4755 1.3000 0.0990 29 1 3.8286 0.8453 -1.5128 30 1 5.4827 -1.6861 -0.6679 31 1 4.4348 -1.0856 -1.9781 32 1 4.1229 -3.4537 -2.0181 33 1 2.7024 -2.8358 -1.1519 34 1 5.1997 -3.9264 0.0804 35 1 3.6593 -4.7813 -0.0976 36 1 2.7479 -5.0425 1.8979 37 1 2.9860 -3.8669 3.2130 38 1 2.8177 -5.9741 3.9220 39 1 4.6902 -2.3584 2.8901 40 1 5.5975 -2.5149 1.3739 41 1 5.1241 -0.2040 1.5113 42 1 3.4822 -0.4805 2.1230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:32 Heat of formation + Delta-G solvation = 2.354764 kcal Electronic energy + Delta-G solvation = -22223.601447 eV Core-core repulsion = 19204.718540 eV Total energy + Delta-G solvation = -3018.882907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03298 -37.59252 -36.24891 -34.47515 -32.53989 -31.87119 -29.87880 -27.18319 -26.74817 -24.89713 -24.58969 -22.67598 -21.67099 -20.84800 -19.30692 -18.41735 -16.61776 -16.35563 -16.03491 -15.13162 -14.85815 -14.72245 -14.21737 -13.71309 -13.51549 -13.41784 -13.03657 -12.89528 -12.51586 -12.37986 -12.19736 -12.00081 -11.95390 -11.59904 -11.51743 -11.07797 -10.89040 -10.81385 -10.33910 -10.11831 -10.08990 -9.98248 -9.72818 -9.65505 -9.00223 -8.70558 -8.29479 -8.12818 -6.89848 -6.27230 -4.02527 3.08147 3.22033 3.44473 3.47571 3.63217 4.45810 4.54083 4.57180 4.76847 5.02478 5.11309 5.24936 5.36286 5.38916 5.44358 5.49216 5.58426 5.67003 5.73611 5.76298 5.83134 5.89019 5.93883 6.06605 6.18399 6.24788 6.46217 6.54902 6.60458 6.68197 6.79585 6.83639 6.98122 7.17430 7.28009 7.42595 7.52937 8.08034 8.29328 8.48218 8.67266 8.72443 8.89660 9.71695 11.07384 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030811 B = 0.005725 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.539297 B = 4889.503658 C = 5112.499711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.639 5.639 3 C 0.108 3.892 4 C -0.133 4.133 5 C -0.072 4.072 6 C -0.093 4.093 7 C -0.161 4.161 8 C 0.084 3.916 9 N -0.507 5.507 10 C 0.182 3.818 11 C -0.626 4.626 12 H 0.049 0.951 13 C 0.019 3.981 14 N -0.912 5.912 15 Si 1.068 2.932 16 H -0.289 1.289 17 H -0.284 1.284 18 H -0.291 1.291 19 C 0.065 3.935 20 C -0.091 4.091 21 C 0.524 3.476 22 O -0.461 6.461 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.123 0.877 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.015 0.985 38 H 0.270 0.730 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 17.308 -10.340 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.376 5.376 3 C -0.015 4.015 4 C -0.170 4.170 5 C -0.076 4.076 6 C -0.131 4.131 7 C -0.198 4.198 8 C -0.044 4.044 9 N -0.230 5.230 10 C 0.055 3.945 11 C -0.665 4.665 12 H 0.067 0.933 13 C -0.185 4.185 14 N -0.548 5.548 15 Si 0.897 3.103 16 H -0.215 1.215 17 H -0.210 1.210 18 H -0.217 1.217 19 C -0.065 4.065 20 C -0.130 4.130 21 C 0.312 3.688 22 O -0.333 6.333 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.140 0.860 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.517 15.728 -9.460 18.416 hybrid contribution 0.184 0.911 -0.695 1.161 sum -1.333 16.640 -10.155 19.539 Atomic orbital electron populations 1.21427 0.78962 1.03542 1.00498 1.48253 1.05890 1.07437 1.76031 1.21927 0.90958 0.87566 1.01098 1.22947 0.96354 0.95842 1.01879 1.20921 0.94258 0.94433 0.97951 1.21218 0.99083 0.96409 0.96363 1.21644 1.06621 0.94271 0.97232 1.20466 0.96665 0.96981 0.90264 1.61900 1.42096 1.15585 1.03381 1.19889 0.95921 0.88796 0.89859 1.22688 0.94575 1.21192 1.28053 0.93302 1.25754 1.03864 0.95259 0.93673 1.70741 0.99247 1.42416 1.42397 0.83567 0.74374 0.75795 0.76604 1.21550 1.21023 1.21679 1.21688 0.93779 0.90906 1.00107 1.22067 0.99568 0.98738 0.92593 1.20556 0.88532 0.84093 0.75596 1.90524 1.77402 1.19846 1.45552 0.90002 0.92800 0.92912 0.91215 0.91746 0.89519 0.90346 0.91652 0.92504 0.93870 0.86023 0.96407 0.92717 0.96367 0.96664 0.91966 0.91577 0.95169 0.91887 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 11.14 59.85 0.67 1.75 16 2 N -0.64 -8.40 3.33 -180.31 -0.60 -9.00 16 3 C 0.11 1.05 7.30 -3.11 -0.02 1.03 16 4 C -0.13 -1.32 6.13 -25.12 -0.15 -1.48 16 5 C -0.07 -1.03 0.56 -155.20 -0.09 -1.12 16 6 C -0.09 -1.38 5.03 -27.17 -0.14 -1.51 16 7 C -0.16 -2.89 5.24 -29.25 -0.15 -3.05 16 8 C 0.08 1.83 4.09 -6.74 -0.03 1.81 16 9 N -0.51 -11.72 2.43 -241.04 -0.59 -12.30 16 10 C 0.18 4.99 4.15 -4.97 -0.02 4.97 16 11 C -0.63 -18.10 7.73 -34.44 -0.27 -18.37 16 12 H 0.05 1.41 6.62 -52.48 -0.35 1.06 16 13 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 14 N -0.91 -28.60 13.65 55.43 0.76 -27.85 16 15 Si 1.07 26.05 29.90 -169.99 -5.08 20.96 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.07 1.35 4.09 -4.66 -0.02 1.33 16 20 C -0.09 -1.44 4.89 -25.50 -0.12 -1.56 16 21 C 0.52 8.71 5.89 -10.89 -0.06 8.64 16 22 O -0.46 -9.51 11.34 5.57 0.06 -9.44 16 23 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.72 7.56 -51.93 -0.39 0.33 16 29 H 0.08 0.69 7.43 -51.93 -0.39 0.31 16 30 H 0.06 0.98 7.21 -51.93 -0.37 0.61 16 31 H 0.06 0.71 7.36 -51.93 -0.38 0.33 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.12 2.40 4.10 -56.84 -0.23 2.17 16 34 H 0.02 0.40 6.83 -51.93 -0.35 0.04 16 35 H 0.05 1.30 7.63 -51.93 -0.40 0.91 16 36 H 0.02 0.54 7.76 -51.93 -0.40 0.14 16 37 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 38 H 0.27 8.52 7.22 -40.82 -0.29 8.22 16 39 H 0.07 1.50 7.29 -51.93 -0.38 1.12 16 40 H 0.03 0.63 6.29 -51.93 -0.33 0.30 16 41 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 42 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -33.39 308.82 -8.10 -41.49 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.80 Total: -1.42 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.51 Total: -7.09 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.43 Total: -49.16 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.06 Total: -9.44 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.39 -8.10 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.847 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds