Wall clock time and date at job start Mon Mar 30 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46771 * 124.34801 * 2 1 4 4 C 1.54495 * 105.47386 * 196.97133 * 3 2 1 5 5 C 1.54567 * 101.74793 * 334.66271 * 4 3 2 6 6 C 1.50447 * 110.36589 * 144.07503 * 5 4 3 7 7 C 1.54597 * 108.89834 * 213.76472 * 6 5 4 8 8 C 1.45898 * 111.48959 * 283.24837 * 7 6 5 9 9 N 1.47720 * 113.02818 * 61.36679 * 8 7 6 10 10 C 1.46904 * 111.00034 * 153.48885 * 9 8 7 11 11 C 1.50703 * 109.46874 * 66.04816 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.44291 * 109.46445 * 276.36369 * 9 8 7 20 20 C 1.54077 * 111.83818 * 96.48571 * 19 9 8 21 21 C 1.34453 * 124.34795 * 179.97438 * 2 1 3 22 22 O 1.21270 * 124.95910 * 359.56496 * 21 2 1 23 23 H 1.09005 * 109.46956 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47776 * 300.02222 * 1 2 3 25 25 H 1.09000 * 109.47038 * 60.02974 * 1 2 3 26 26 H 1.08992 * 110.24805 * 315.97436 * 3 2 1 27 27 H 1.08998 * 110.24480 * 77.88787 * 3 2 1 28 28 H 1.08996 * 110.97460 * 216.55210 * 4 3 2 29 29 H 1.08998 * 110.97582 * 92.77385 * 4 3 2 30 30 H 1.09004 * 109.56811 * 93.93840 * 6 5 4 31 31 H 1.09004 * 109.56739 * 333.59485 * 6 5 4 32 32 H 1.08997 * 109.07988 * 162.72681 * 7 6 5 33 33 H 1.09004 * 109.07199 * 43.76567 * 7 6 5 34 34 H 1.08992 * 108.77757 * 300.45269 * 8 7 6 35 35 H 1.09001 * 108.77181 * 182.28227 * 8 7 6 36 36 H 1.09003 * 109.47066 * 306.05093 * 10 9 8 37 37 H 1.08996 * 109.47319 * 186.04565 * 10 9 8 38 38 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 39 39 H 1.08994 * 109.01012 * 217.09237 * 19 9 8 40 40 H 1.08994 * 109.00519 * 335.88119 * 19 9 8 41 41 H 1.08995 * 108.93003 * 198.29114 * 20 19 9 42 42 H 1.09004 * 108.85833 * 79.65276 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7015 0.7486 -0.4346 5 6 3.6888 -0.7376 -0.0103 6 6 4.4517 -1.5720 -1.0028 7 6 3.7841 -2.9626 -1.1060 8 6 4.1176 -3.8020 0.0398 9 7 3.6557 -3.2369 1.3241 10 6 3.4265 -4.2978 2.3140 11 6 4.7387 -4.9524 2.6616 12 1 5.6515 -4.6144 2.1936 13 6 4.7738 -5.9835 3.5763 14 7 3.6622 -6.3954 4.1458 15 14 6.4004 -6.7943 4.0077 16 1 6.6450 -7.9337 3.0871 17 1 6.3507 -7.2901 5.4066 18 1 7.4985 -5.8039 3.8722 19 6 4.6240 -2.2813 1.8050 20 6 4.2412 -0.8376 1.4269 21 6 2.2236 -1.1101 0.0005 22 8 1.7951 -2.2445 0.0086 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5141 0.8897 25 1 -0.3633 0.5134 -0.8903 26 1 1.8989 1.9381 -0.7107 27 1 2.3288 1.6442 0.9999 28 1 4.4755 1.3000 0.0990 29 1 3.8286 0.8453 -1.5128 30 1 5.4827 -1.6861 -0.6679 31 1 4.4348 -1.0856 -1.9781 32 1 4.1229 -3.4537 -2.0181 33 1 2.7024 -2.8358 -1.1519 34 1 5.1997 -3.9264 0.0804 35 1 3.6593 -4.7813 -0.0976 36 1 2.7479 -5.0425 1.8979 37 1 2.9860 -3.8669 3.2130 38 1 2.8177 -5.9741 3.9220 39 1 4.6902 -2.3584 2.8901 40 1 5.5975 -2.5149 1.3739 41 1 5.1241 -0.2040 1.5113 42 1 3.4822 -0.4805 2.1230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:31 Heat of formation + Delta-G solvation = -20.325114 kcal Electronic energy + Delta-G solvation = -22224.584920 eV Core-core repulsion = 19204.718540 eV Total energy + Delta-G solvation = -3019.866381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.22066 -39.20799 -37.45377 -36.07425 -34.45003 -33.41010 -31.08352 -28.87210 -27.73691 -26.72306 -25.99631 -24.60348 -22.93496 -22.09967 -20.99344 -19.58251 -18.76077 -17.53670 -17.27079 -16.60814 -16.23008 -16.02141 -15.69967 -15.67176 -14.94223 -14.71845 -14.46862 -14.30478 -13.99628 -13.76479 -13.48331 -13.32123 -13.17513 -13.00998 -12.82663 -12.70625 -12.54778 -12.22160 -12.09392 -11.98745 -11.55324 -11.45358 -11.35460 -11.20739 -11.00189 -10.62468 -9.89811 -9.28889 -8.96421 -8.57032 -6.47008 1.45244 1.54950 1.72624 1.87136 2.28196 2.50424 3.09309 3.28719 3.44337 3.68198 3.81977 4.10805 4.15590 4.23786 4.31509 4.43222 4.48000 4.52626 4.63510 4.63977 4.72850 4.76489 4.85699 4.89185 4.89497 4.97420 5.01446 5.07455 5.09962 5.19014 5.21435 5.28338 5.33753 5.41024 5.66619 5.80404 5.95163 5.96936 6.37505 6.43235 6.50229 6.64554 7.38464 7.55655 8.63549 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030811 B = 0.005725 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.539297 B = 4889.503658 C = 5112.499711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.639 5.639 3 C 0.102 3.898 4 C -0.118 4.118 5 C -0.077 4.077 6 C -0.086 4.086 7 C -0.162 4.162 8 C 0.095 3.905 9 N -0.503 5.503 10 C 0.194 3.806 11 C -0.629 4.629 12 H 0.049 0.951 13 C -0.035 4.035 14 N -0.934 5.934 15 Si 1.121 2.879 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.269 1.269 19 C 0.063 3.937 20 C -0.081 4.081 21 C 0.508 3.492 22 O -0.520 6.520 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.009 0.991 35 H 0.016 0.984 36 H -0.018 1.018 37 H -0.012 1.012 38 H 0.253 0.747 39 H 0.035 0.965 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 20.584 -11.771 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.374 5.374 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.081 4.081 6 C -0.124 4.124 7 C -0.199 4.199 8 C -0.032 4.032 9 N -0.225 5.225 10 C 0.067 3.933 11 C -0.667 4.667 12 H 0.068 0.932 13 C -0.233 4.233 14 N -0.571 5.571 15 Si 0.941 3.059 16 H -0.200 1.200 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.066 4.066 20 C -0.120 4.120 21 C 0.297 3.703 22 O -0.396 6.396 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.027 0.973 35 H 0.035 0.965 36 H 0.000 1.000 37 H 0.006 0.994 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.120 0.880 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.410 19.088 -10.915 21.992 hybrid contribution -0.513 -0.070 -0.256 0.577 sum -0.103 19.018 -11.171 22.056 Atomic orbital electron populations 1.21546 0.78209 1.02384 1.02667 1.48441 1.06776 1.07901 1.74312 1.22251 0.90429 0.86525 1.02791 1.22974 0.97181 0.91809 1.03578 1.20961 0.92451 0.97964 0.96710 1.21217 0.98521 0.94208 0.98458 1.21556 1.06544 0.96227 0.95557 1.20461 0.95368 0.96312 0.91105 1.61976 1.43521 1.14306 1.02745 1.19555 0.94756 0.89184 0.89799 1.22879 0.94791 1.21220 1.27838 0.93223 1.27447 1.06628 0.95914 0.93324 1.70885 0.99345 1.43152 1.43675 0.82904 0.70421 0.75743 0.76793 1.19981 1.20476 1.19346 1.21786 0.93214 0.93478 0.98161 1.21992 1.01113 0.95033 0.93824 1.21104 0.90031 0.84072 0.75047 1.90509 1.78523 1.22249 1.48345 0.92892 0.91309 0.89930 0.87944 0.90738 0.86853 0.88213 0.91501 0.88998 0.92422 0.87224 0.97318 0.96524 1.00007 0.99393 0.93796 0.94665 0.95379 0.87979 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.94 11.14 127.77 1.42 3.36 16 2 N -0.64 -15.35 3.33 -842.96 -2.81 -18.16 16 3 C 0.10 1.49 7.30 86.84 0.63 2.13 16 4 C -0.12 -1.70 6.13 31.64 0.19 -1.50 16 5 C -0.08 -2.00 0.56 -52.63 -0.03 -2.03 16 6 C -0.09 -2.31 5.03 30.31 0.15 -2.16 16 7 C -0.16 -5.83 5.24 28.96 0.15 -5.68 16 8 C 0.10 4.35 4.09 83.97 0.34 4.69 16 9 N -0.50 -24.49 2.43 -916.51 -2.23 -26.72 16 10 C 0.19 11.51 4.15 85.56 0.36 11.86 16 11 C -0.63 -37.89 7.73 25.60 0.20 -37.69 16 12 H 0.05 2.94 6.62 -2.91 -0.02 2.92 16 13 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 14 N -0.93 -60.96 13.65 21.45 0.29 -60.67 16 15 Si 1.12 52.61 29.90 68.60 2.05 54.66 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.06 2.64 4.09 87.15 0.36 3.00 16 20 C -0.08 -2.40 4.89 31.39 0.15 -2.25 16 21 C 0.51 16.49 5.89 87.86 0.52 17.01 16 22 O -0.52 -22.35 11.34 -3.00 -0.03 -22.38 16 23 H 0.05 1.40 7.53 -2.38 -0.02 1.38 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.11 1.11 7.56 -2.39 -0.02 1.09 16 29 H 0.10 1.09 7.43 -2.39 -0.02 1.08 16 30 H 0.07 1.79 7.21 -2.39 -0.02 1.77 16 31 H 0.09 1.85 7.36 -2.39 -0.02 1.83 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 4.45 4.10 -80.20 -0.33 4.13 16 34 H 0.01 0.40 6.83 -2.39 -0.02 0.38 16 35 H 0.02 0.84 7.63 -2.39 -0.02 0.82 16 36 H -0.02 -1.19 7.76 -2.39 -0.02 -1.21 16 37 H -0.01 -0.76 8.00 -2.39 -0.02 -0.78 16 38 H 0.25 17.01 7.22 -92.71 -0.67 16.34 16 39 H 0.03 1.66 7.29 -2.39 -0.02 1.64 16 40 H 0.03 1.17 6.29 -2.39 -0.02 1.15 16 41 H 0.10 2.25 7.68 -2.39 -0.02 2.23 16 42 H 0.05 1.54 7.93 -2.38 -0.02 1.52 16 Total: -1.00 -79.30 308.82 2.96 -76.34 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.78 Total: 7.86 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.91 Total: -10.93 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -4.75 Total: -105.55 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.03 Total: -22.38 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -79.30 2.96 -76.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.010 kcal (2) G-P(sol) polarization free energy of solvation -79.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds