Wall clock time and date at job start Mon Mar 30 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46912 * 124.35175 * 2 1 4 4 C 1.53839 * 105.34423 * 163.59946 * 3 2 1 5 5 C 1.53960 * 102.46235 * 24.71399 * 4 3 2 6 6 C 1.34497 * 124.35059 * 180.02562 * 2 1 3 7 7 O 1.21289 * 124.94114 * 0.35863 * 6 2 1 8 8 C 1.52239 * 110.58485 * 266.86327 * 4 3 2 9 9 C 1.53262 * 109.35405 * 293.64824 * 8 4 3 10 10 C 1.53129 * 109.05632 * 303.55652 * 9 8 4 11 11 C 1.53032 * 109.41107 * 58.24781 * 10 9 8 12 12 N 1.45976 * 110.73932 * 142.82809 * 4 3 2 13 13 C 1.46906 * 110.99815 * 299.61156 * 12 4 3 14 14 C 1.53000 * 109.47031 * 175.41283 * 13 12 4 15 15 C 1.50696 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99933 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47089 * 90.00139 * 19 17 15 21 21 H 1.48497 * 109.47172 * 210.00274 * 19 17 15 22 22 H 1.48506 * 109.47300 * 330.00549 * 19 17 15 23 23 H 1.08992 * 109.47264 * 89.99436 * 1 2 3 24 24 H 1.08997 * 109.47183 * 210.00039 * 1 2 3 25 25 H 1.09003 * 109.46751 * 329.99747 * 1 2 3 26 26 H 1.09001 * 110.27014 * 44.62818 * 3 2 1 27 27 H 1.09004 * 110.35093 * 282.60794 * 3 2 1 28 28 H 1.08995 * 110.50975 * 94.52252 * 5 4 3 29 29 H 1.09000 * 110.50538 * 217.23156 * 5 4 3 30 30 H 1.08999 * 109.48853 * 53.60660 * 8 4 3 31 31 H 1.08996 * 109.49482 * 173.68151 * 8 4 3 32 32 H 1.09002 * 109.53721 * 63.42742 * 9 8 4 33 33 H 1.08992 * 109.53912 * 183.68198 * 9 8 4 34 34 H 1.08998 * 109.48093 * 178.23347 * 10 9 8 35 35 H 1.09002 * 109.48192 * 298.27199 * 10 9 8 36 36 H 1.09000 * 109.47066 * 180.24239 * 11 10 9 37 37 H 1.08998 * 109.47208 * 60.24258 * 11 10 9 38 38 H 1.09008 * 109.46565 * 55.41346 * 13 12 4 39 39 H 1.08997 * 109.47091 * 295.41691 * 13 12 4 40 40 H 1.08997 * 109.47000 * 60.00536 * 14 13 12 41 41 H 1.08994 * 109.46870 * 300.00499 * 14 13 12 42 42 H 0.97000 * 119.99885 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2129 0.0000 4 6 3.6987 0.7459 0.4189 5 6 3.6917 -0.7380 0.0084 6 6 2.2240 -1.1104 -0.0005 7 8 1.7951 -2.2449 -0.0072 8 6 3.8818 0.8834 1.9239 9 6 3.8628 2.3679 2.3044 10 6 4.9466 3.1017 1.5096 11 6 4.6950 2.9125 0.0120 12 7 4.7269 1.4795 -0.3129 13 6 4.5973 1.2648 -1.7604 14 6 5.6156 2.1361 -2.4985 15 6 5.4821 1.9163 -3.9833 16 1 4.7445 1.2247 -4.3627 17 6 6.3010 2.5989 -4.8576 18 7 7.1990 3.4415 -4.3957 19 14 6.1361 2.3260 -6.6982 20 1 5.1539 3.2903 -7.2556 21 1 7.4550 2.5308 -7.3491 22 1 5.6681 0.9398 -6.9531 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.9063 1.9353 0.7183 27 1 2.3238 1.6517 -0.9974 28 1 4.1231 -0.8615 -0.9848 29 1 4.2337 -1.3387 0.7388 30 1 3.0716 0.3660 2.4376 31 1 4.8363 0.4454 2.2158 32 1 2.8870 2.7924 2.0680 33 1 4.0588 2.4734 3.3714 34 1 4.9185 4.1641 1.7516 35 1 5.9246 2.6956 1.7679 36 1 5.4685 3.4309 -0.5547 37 1 3.7187 3.3222 -0.2470 38 1 3.5901 1.5340 -2.0788 39 1 4.7826 0.2155 -1.9901 40 1 6.6226 1.8668 -2.1801 41 1 5.4302 3.1853 -2.2687 42 1 7.2854 3.5824 -3.4398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:12 Heat of formation + Delta-G solvation = -52.965087 kcal Electronic energy + Delta-G solvation = -21634.468343 eV Core-core repulsion = 18613.186587 eV Total energy + Delta-G solvation = -3021.281756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41481 -39.79154 -36.99080 -36.16810 -34.55949 -33.67383 -30.69207 -29.63335 -28.50540 -26.66093 -26.07000 -25.04599 -22.67151 -22.13161 -20.94398 -19.51764 -19.00746 -17.86130 -17.49282 -16.84946 -16.30112 -16.17502 -15.70817 -15.51156 -15.27133 -15.05659 -14.79481 -14.49602 -14.27396 -14.00986 -13.69082 -13.53046 -13.36575 -13.26989 -13.05103 -12.73879 -12.65947 -12.19008 -12.05066 -12.01001 -11.90555 -11.56188 -11.28159 -11.12842 -10.92246 -10.71504 -10.51385 -9.87615 -9.23751 -8.68685 -6.38902 1.39272 1.51397 1.60007 1.77863 1.94505 2.53019 2.73023 3.16093 3.27772 3.47467 3.63125 3.71760 3.96669 4.11413 4.16879 4.20090 4.29192 4.35048 4.43836 4.47801 4.53830 4.55860 4.60571 4.72939 4.76338 4.85929 4.88446 4.98534 5.02439 5.06054 5.20799 5.27857 5.30419 5.39118 5.43208 5.50721 5.87328 5.91541 6.14591 6.19713 6.21599 6.59715 6.99415 7.41774 8.72715 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.005864 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.944474 B = 4773.602094 C = 5720.853911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.615 5.615 3 C 0.072 3.928 4 C 0.110 3.890 5 C -0.154 4.154 6 C 0.516 3.484 7 O -0.577 6.577 8 C -0.095 4.095 9 C -0.114 4.114 10 C -0.111 4.111 11 C 0.049 3.951 12 N -0.523 5.523 13 C 0.077 3.923 14 C 0.019 3.981 15 C -0.620 4.620 16 H 0.045 0.955 17 C -0.034 4.034 18 N -0.935 5.935 19 Si 1.116 2.884 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.273 1.273 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.026 0.974 39 H 0.062 0.938 40 H -0.009 1.009 41 H 0.002 0.998 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 -1.106 14.770 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.348 5.348 3 C -0.052 4.052 4 C 0.019 3.981 5 C -0.193 4.193 6 C 0.304 3.696 7 O -0.457 6.457 8 C -0.133 4.133 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.078 4.078 12 N -0.246 5.246 13 C -0.049 4.049 14 C -0.018 4.018 15 C -0.658 4.658 16 H 0.064 0.936 17 C -0.232 4.232 18 N -0.572 5.572 19 Si 0.937 3.063 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.198 1.198 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.009 0.991 41 H 0.020 0.980 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.307 -1.396 13.468 17.017 hybrid contribution -1.108 -0.129 0.751 1.344 sum -11.415 -1.525 14.219 18.297 Atomic orbital electron populations 1.21757 0.76677 1.04286 1.02456 1.48302 1.07466 1.06831 1.72169 1.22998 0.91929 0.87775 1.02533 1.21408 0.88089 0.92005 0.96596 1.22579 0.93586 0.97472 1.05712 1.21168 0.89976 0.84076 0.74343 1.90668 1.79449 1.22593 1.53027 1.21462 1.03218 0.98316 0.90284 1.21633 0.98912 0.93744 1.00829 1.21588 0.99952 1.01228 0.92143 1.22211 1.00104 0.87417 0.98048 1.61844 1.45978 1.10507 1.06310 1.22002 0.97335 0.99611 0.86000 1.19160 0.94029 0.94340 0.94282 1.22440 1.21972 1.28075 0.93359 0.93618 1.27292 0.92363 0.92802 1.10735 1.70883 1.34789 1.35578 1.15983 0.82944 0.76779 0.76887 0.69642 1.19711 1.20739 1.19799 0.92572 0.90981 0.88026 0.87451 0.92085 0.88059 0.86393 0.90328 0.90343 0.91184 0.89299 0.89982 0.91640 0.92287 0.94665 0.95561 0.91968 0.99077 0.97968 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 10.96 127.77 1.40 3.11 16 2 N -0.61 -15.45 3.34 -843.47 -2.82 -18.27 16 3 C 0.07 1.71 5.08 86.58 0.44 2.15 16 4 C 0.11 2.80 0.60 4.06 0.00 2.80 16 5 C -0.15 -4.34 5.87 30.40 0.18 -4.16 16 6 C 0.52 15.87 8.03 87.93 0.71 16.58 16 7 O -0.58 -21.74 17.60 -3.06 -0.05 -21.79 16 8 C -0.10 -1.84 4.76 30.43 0.14 -1.70 16 9 C -0.11 -1.86 5.80 30.73 0.18 -1.69 16 10 C -0.11 -2.37 6.07 30.65 0.19 -2.18 16 11 C 0.05 1.46 4.78 86.30 0.41 1.87 16 12 N -0.52 -16.69 4.61 -846.54 -3.91 -20.60 16 13 C 0.08 3.11 4.35 86.30 0.38 3.49 16 14 C 0.02 0.97 3.75 29.85 0.11 1.08 16 15 C -0.62 -35.16 9.11 25.60 0.23 -34.93 16 16 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 17 C -0.03 -1.95 5.46 84.65 0.46 -1.49 16 18 N -0.94 -57.42 13.65 21.45 0.29 -57.13 16 19 Si 1.12 50.40 29.90 68.60 2.05 52.45 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.43 7.93 -2.39 -0.02 1.41 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 1.96 6.20 -2.39 -0.01 1.95 16 27 H 0.06 1.72 5.61 -2.38 -0.01 1.71 16 28 H 0.10 3.27 5.39 -2.39 -0.01 3.26 16 29 H 0.12 2.98 7.88 -2.39 -0.02 2.96 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.02 6.54 -2.39 -0.02 1.01 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 2.12 5.91 -2.39 -0.01 2.11 16 37 H 0.04 0.99 7.19 -2.39 -0.02 0.97 16 38 H 0.03 1.06 5.86 -2.38 -0.01 1.05 16 39 H 0.06 2.58 5.94 -2.39 -0.01 2.56 16 40 H -0.01 -0.50 8.01 -2.39 -0.02 -0.52 16 41 H 0.00 0.11 6.08 -2.39 -0.01 0.10 16 42 H 0.26 15.92 7.22 -92.71 -0.67 15.25 16 Total: -1.00 -69.80 315.55 1.51 -68.30 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.11 Total: 12.11 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.83 Total: -15.08 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -6.43 Total: -96.00 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -69.80 1.51 -68.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.333 kcal (2) G-P(sol) polarization free energy of solvation -69.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds