Wall clock time and date at job start Mon Mar 30 2020 01:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46915 * 124.34871 * 2 1 4 4 C 1.53844 * 105.34439 * 163.55244 * 3 2 1 5 5 C 1.53958 * 102.46131 * 24.71016 * 4 3 2 6 6 C 1.34494 * 124.35219 * 179.97438 * 2 1 3 7 7 O 1.21284 * 124.95038 * 0.37212 * 6 2 1 8 8 C 1.52235 * 110.58371 * 142.56220 * 4 3 2 9 9 C 1.53258 * 109.36088 * 66.37490 * 8 4 3 10 10 C 1.53119 * 109.05979 * 56.43805 * 9 8 4 11 11 C 1.53040 * 109.40895 * 301.75192 * 10 9 8 12 12 N 1.45967 * 110.74661 * 266.60506 * 4 3 2 13 13 C 1.46905 * 111.00219 * 60.37522 * 12 4 3 14 14 C 1.52998 * 109.47395 * 170.37075 * 13 12 4 15 15 C 1.50695 * 109.47062 * 185.33619 * 14 13 12 16 16 H 1.07998 * 119.99898 * 354.99918 * 15 14 13 17 17 C 1.37883 * 120.00226 * 175.00455 * 15 14 13 18 18 N 1.31520 * 119.99484 * 5.04521 * 17 15 14 19 19 Si 1.86791 * 120.00248 * 185.04662 * 17 15 14 20 20 H 1.48496 * 109.47349 * 89.99762 * 19 17 15 21 21 H 1.48503 * 109.47312 * 209.99980 * 19 17 15 22 22 H 1.48500 * 109.47291 * 329.99985 * 19 17 15 23 23 H 1.09000 * 109.46995 * 95.04388 * 1 2 3 24 24 H 1.09004 * 109.46732 * 215.03708 * 1 2 3 25 25 H 1.08995 * 109.47216 * 335.03711 * 1 2 3 26 26 H 1.08997 * 110.27357 * 44.58143 * 3 2 1 27 27 H 1.09004 * 110.26538 * 282.51521 * 3 2 1 28 28 H 1.09004 * 110.50969 * 94.52682 * 5 4 3 29 29 H 1.08999 * 110.50621 * 217.22906 * 5 4 3 30 30 H 1.09005 * 109.49103 * 306.41040 * 8 4 3 31 31 H 1.09001 * 109.50884 * 186.35418 * 8 4 3 32 32 H 1.09000 * 109.53689 * 296.56616 * 9 8 4 33 33 H 1.08997 * 109.53979 * 176.31645 * 9 8 4 34 34 H 1.09004 * 109.48375 * 181.77047 * 10 9 8 35 35 H 1.08999 * 109.49244 * 61.73561 * 10 9 8 36 36 H 1.09003 * 109.46840 * 299.76967 * 11 10 9 37 37 H 1.09000 * 109.47635 * 179.76829 * 11 10 9 38 38 H 1.09004 * 109.46802 * 290.36837 * 13 12 4 39 39 H 1.09001 * 109.46796 * 50.36451 * 13 12 4 40 40 H 1.09006 * 109.46538 * 305.33084 * 14 13 12 41 41 H 1.08998 * 109.47187 * 65.33212 * 14 13 12 42 42 H 0.97000 * 119.99301 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2130 0.0000 4 6 3.6984 0.7462 0.4201 5 6 3.6917 -0.7378 0.0104 6 6 2.2240 -1.1104 0.0005 7 8 1.7953 -2.2449 -0.0055 8 6 4.7682 1.5085 -0.3495 9 6 4.7366 2.9841 0.0631 10 6 4.9191 3.0831 1.5802 11 6 3.8113 2.2910 2.2784 12 7 3.8790 0.8830 1.8621 13 6 2.8994 0.0696 2.5948 14 6 3.2652 0.0460 4.0802 15 6 2.3394 -0.8922 4.8107 16 1 1.5174 -1.3566 4.2863 17 6 2.5417 -1.1576 6.1485 18 7 3.4801 -0.5174 6.8113 19 14 1.4831 -2.4264 7.0195 20 1 2.1228 -3.7622 6.9128 21 1 1.3445 -2.0569 8.4511 22 1 0.1401 -2.4689 6.3871 23 1 -0.3633 -0.0904 -1.0237 24 1 -0.3633 -0.8415 0.5900 25 1 -0.3633 0.9316 0.4337 26 1 1.9058 1.9357 0.7177 27 1 2.3240 1.6497 -0.9983 28 1 4.1239 -0.8619 -0.9826 29 1 4.2332 -1.3382 0.7414 30 1 4.5752 1.4258 -1.4191 31 1 5.7482 1.0885 -0.1232 32 1 3.7783 3.4208 -0.2180 33 1 5.5435 3.5198 -0.4369 34 1 4.8663 4.1282 1.8853 35 1 5.8898 2.6721 1.8574 36 1 2.8408 2.7047 2.0043 37 1 3.9425 2.3573 3.3585 38 1 1.9055 0.5001 2.4722 39 1 2.9058 -0.9474 2.2027 40 1 4.2939 -0.2956 4.1956 41 1 3.1668 1.0494 4.4946 42 1 3.6226 -0.7045 7.7523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:15 Heat of formation + Delta-G solvation = -31.413190 kcal Electronic energy + Delta-G solvation = -21909.593002 eV Core-core repulsion = 18889.245806 eV Total energy + Delta-G solvation = -3020.347196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22714 -38.25132 -35.47262 -34.31338 -32.74573 -32.36559 -29.24158 -28.43705 -27.31981 -25.54753 -24.42039 -23.30783 -21.47069 -20.24146 -19.69513 -18.30689 -16.99215 -16.28534 -16.06991 -15.25078 -14.99082 -14.59352 -14.53960 -14.31627 -14.09540 -13.58235 -13.05826 -13.01351 -12.71963 -12.57434 -12.30096 -12.20800 -11.94226 -11.85194 -11.58016 -11.21528 -11.11136 -10.92880 -10.64960 -10.58759 -10.45755 -10.26775 -9.77892 -9.47399 -9.37652 -9.10537 -8.61997 -8.30944 -7.78545 -5.98913 -4.00098 2.82197 3.17789 3.34888 3.40774 3.44699 4.12487 4.43273 4.48535 4.56816 4.81469 4.92413 5.02657 5.21296 5.28187 5.30912 5.37278 5.39897 5.42987 5.54790 5.63463 5.72531 5.75776 5.80372 5.91982 5.97681 6.04804 6.08860 6.14678 6.22230 6.36193 6.48797 6.51599 6.62328 6.95781 7.23813 7.41997 7.53940 7.77473 7.87062 8.06743 8.38180 8.44658 9.06520 9.63559 11.12420 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.006870 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.163737 B = 4074.488717 C = 5098.787073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.622 5.622 3 C 0.075 3.925 4 C 0.105 3.895 5 C -0.147 4.147 6 C 0.521 3.479 7 O -0.533 6.533 8 C -0.098 4.098 9 C -0.120 4.120 10 C -0.118 4.118 11 C 0.052 3.948 12 N -0.518 5.518 13 C 0.060 3.940 14 C 0.031 3.969 15 C -0.520 4.520 16 H 0.052 0.948 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.013 0.987 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 8.701 -15.921 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.357 5.357 3 C -0.050 4.050 4 C 0.013 3.987 5 C -0.187 4.187 6 C 0.309 3.691 7 O -0.410 6.410 8 C -0.136 4.136 9 C -0.158 4.158 10 C -0.155 4.155 11 C -0.075 4.075 12 N -0.241 5.241 13 C -0.066 4.066 14 C -0.007 4.007 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.129 7.941 -15.621 17.560 hybrid contribution -1.532 -0.295 0.440 1.621 sum -0.403 7.645 -15.181 17.003 Atomic orbital electron populations 1.21486 0.78461 1.03101 1.01303 1.48161 1.06263 1.07291 1.73951 1.22873 0.92719 0.87875 1.01575 1.21367 0.92352 0.94204 0.90754 1.22463 0.94644 0.97142 1.04457 1.20914 0.89374 0.84237 0.74533 1.90712 1.78757 1.21090 1.50440 1.21437 0.98968 0.95090 0.98088 1.21618 1.01450 0.95994 0.96724 1.21608 1.00123 0.99370 0.94437 1.22178 0.96473 0.87399 1.01474 1.61976 1.51859 1.09097 1.01212 1.22460 0.91054 0.95558 0.97575 1.19080 0.97609 0.96841 0.87137 1.21159 1.13093 1.26940 0.94735 0.92954 1.24962 0.95531 0.96170 0.97461 1.69978 1.32787 1.41189 1.09224 0.86620 0.80827 0.82072 0.78665 1.20534 1.21266 1.19963 0.93009 0.90800 0.91208 0.90292 0.91247 0.87828 0.86603 0.91511 0.90257 0.92408 0.91828 0.91853 0.90909 0.95348 0.89182 0.96083 0.91814 0.95398 0.96870 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.27 10.92 59.85 0.65 1.93 16 2 N -0.62 -9.26 2.63 -180.48 -0.48 -9.74 16 3 C 0.07 0.94 4.78 -3.38 -0.02 0.92 16 4 C 0.10 1.40 0.71 -131.56 -0.09 1.31 16 5 C -0.15 -2.13 5.44 -27.02 -0.15 -2.28 16 6 C 0.52 9.08 6.10 -10.75 -0.07 9.02 16 7 O -0.53 -11.36 17.67 5.55 0.10 -11.26 16 8 C -0.10 -1.00 4.66 -26.99 -0.13 -1.13 16 9 C -0.12 -1.15 5.81 -26.54 -0.15 -1.30 16 10 C -0.12 -1.37 6.07 -26.65 -0.16 -1.53 16 11 C 0.05 0.79 5.05 -3.76 -0.02 0.77 16 12 N -0.52 -8.70 4.47 -218.92 -0.98 -9.67 16 13 C 0.06 1.26 3.50 -3.82 -0.01 1.25 16 14 C 0.03 0.80 4.75 -27.89 -0.13 0.66 16 15 C -0.52 -15.07 9.10 -34.44 -0.31 -15.39 16 16 H 0.05 1.52 7.75 -52.49 -0.41 1.11 16 17 C 0.06 1.75 5.45 -17.82 -0.10 1.66 16 18 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 25 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 26 H 0.08 1.03 5.74 -51.93 -0.30 0.73 16 27 H 0.07 0.71 7.78 -51.93 -0.40 0.30 16 28 H 0.10 1.19 7.86 -51.93 -0.41 0.78 16 29 H 0.12 1.89 7.38 -51.93 -0.38 1.50 16 30 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.41 6.19 -51.93 -0.32 0.09 16 37 H 0.09 1.59 6.36 -51.93 -0.33 1.26 16 38 H 0.02 0.45 7.01 -51.93 -0.36 0.08 16 39 H 0.06 1.44 5.20 -51.93 -0.27 1.17 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.01 0.35 6.70 -51.93 -0.35 0.01 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -32.98 318.23 -8.39 -41.37 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.86 Total: -2.39 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.69 Total: -4.12 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.72 Total: -45.64 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.10 Total: -11.26 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.98 -8.39 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.954 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds