Wall clock time and date at job start Mon Mar 30 2020 01:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46915 * 124.34871 * 2 1 4 4 C 1.53844 * 105.34439 * 163.55244 * 3 2 1 5 5 C 1.53958 * 102.46131 * 24.71016 * 4 3 2 6 6 C 1.34494 * 124.35219 * 179.97438 * 2 1 3 7 7 O 1.21284 * 124.95038 * 0.37212 * 6 2 1 8 8 C 1.52235 * 110.58371 * 142.56220 * 4 3 2 9 9 C 1.53258 * 109.36088 * 66.37490 * 8 4 3 10 10 C 1.53119 * 109.05979 * 56.43805 * 9 8 4 11 11 C 1.53040 * 109.40895 * 301.75192 * 10 9 8 12 12 N 1.45967 * 110.74661 * 266.60506 * 4 3 2 13 13 C 1.46905 * 111.00219 * 60.37522 * 12 4 3 14 14 C 1.52998 * 109.47395 * 170.37075 * 13 12 4 15 15 C 1.50695 * 109.47062 * 185.33619 * 14 13 12 16 16 H 1.07998 * 119.99898 * 354.99918 * 15 14 13 17 17 C 1.37883 * 120.00226 * 175.00455 * 15 14 13 18 18 N 1.31520 * 119.99484 * 5.04521 * 17 15 14 19 19 Si 1.86791 * 120.00248 * 185.04662 * 17 15 14 20 20 H 1.48496 * 109.47349 * 89.99762 * 19 17 15 21 21 H 1.48503 * 109.47312 * 209.99980 * 19 17 15 22 22 H 1.48500 * 109.47291 * 329.99985 * 19 17 15 23 23 H 1.09000 * 109.46995 * 95.04388 * 1 2 3 24 24 H 1.09004 * 109.46732 * 215.03708 * 1 2 3 25 25 H 1.08995 * 109.47216 * 335.03711 * 1 2 3 26 26 H 1.08997 * 110.27357 * 44.58143 * 3 2 1 27 27 H 1.09004 * 110.26538 * 282.51521 * 3 2 1 28 28 H 1.09004 * 110.50969 * 94.52682 * 5 4 3 29 29 H 1.08999 * 110.50621 * 217.22906 * 5 4 3 30 30 H 1.09005 * 109.49103 * 306.41040 * 8 4 3 31 31 H 1.09001 * 109.50884 * 186.35418 * 8 4 3 32 32 H 1.09000 * 109.53689 * 296.56616 * 9 8 4 33 33 H 1.08997 * 109.53979 * 176.31645 * 9 8 4 34 34 H 1.09004 * 109.48375 * 181.77047 * 10 9 8 35 35 H 1.08999 * 109.49244 * 61.73561 * 10 9 8 36 36 H 1.09003 * 109.46840 * 299.76967 * 11 10 9 37 37 H 1.09000 * 109.47635 * 179.76829 * 11 10 9 38 38 H 1.09004 * 109.46802 * 290.36837 * 13 12 4 39 39 H 1.09001 * 109.46796 * 50.36451 * 13 12 4 40 40 H 1.09006 * 109.46538 * 305.33084 * 14 13 12 41 41 H 1.08998 * 109.47187 * 65.33212 * 14 13 12 42 42 H 0.97000 * 119.99301 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2940 1.2130 0.0000 4 6 3.6984 0.7462 0.4201 5 6 3.6917 -0.7378 0.0104 6 6 2.2240 -1.1104 0.0005 7 8 1.7953 -2.2449 -0.0055 8 6 4.7682 1.5085 -0.3495 9 6 4.7366 2.9841 0.0631 10 6 4.9191 3.0831 1.5802 11 6 3.8113 2.2910 2.2784 12 7 3.8790 0.8830 1.8621 13 6 2.8994 0.0696 2.5948 14 6 3.2652 0.0460 4.0802 15 6 2.3394 -0.8922 4.8107 16 1 1.5174 -1.3566 4.2863 17 6 2.5417 -1.1576 6.1485 18 7 3.4801 -0.5174 6.8113 19 14 1.4831 -2.4264 7.0195 20 1 2.1228 -3.7622 6.9128 21 1 1.3445 -2.0569 8.4511 22 1 0.1401 -2.4689 6.3871 23 1 -0.3633 -0.0904 -1.0237 24 1 -0.3633 -0.8415 0.5900 25 1 -0.3633 0.9316 0.4337 26 1 1.9058 1.9357 0.7177 27 1 2.3240 1.6497 -0.9983 28 1 4.1239 -0.8619 -0.9826 29 1 4.2332 -1.3382 0.7414 30 1 4.5752 1.4258 -1.4191 31 1 5.7482 1.0885 -0.1232 32 1 3.7783 3.4208 -0.2180 33 1 5.5435 3.5198 -0.4369 34 1 4.8663 4.1282 1.8853 35 1 5.8898 2.6721 1.8574 36 1 2.8408 2.7047 2.0043 37 1 3.9425 2.3573 3.3585 38 1 1.9055 0.5001 2.4722 39 1 2.9058 -0.9474 2.2027 40 1 4.2939 -0.2956 4.1956 41 1 3.1668 1.0494 4.4946 42 1 3.6226 -0.7045 7.7523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:15 Heat of formation + Delta-G solvation = -54.111860 kcal Electronic energy + Delta-G solvation = -21910.577290 eV Core-core repulsion = 18889.245806 eV Total energy + Delta-G solvation = -3021.331484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42808 -39.53901 -36.77495 -35.96681 -34.36705 -33.69908 -31.02057 -29.57098 -28.43908 -27.04289 -25.86276 -24.73759 -22.60685 -21.88061 -20.94004 -19.44655 -18.72208 -17.83220 -17.40602 -16.62759 -16.44440 -16.22098 -15.96241 -15.60657 -15.14451 -14.69813 -14.50827 -14.35799 -14.12176 -13.90872 -13.75418 -13.36617 -13.20765 -13.08107 -12.96932 -12.85946 -12.76922 -12.49647 -12.13275 -11.95969 -11.72477 -11.52706 -11.38243 -11.27786 -11.04096 -10.71733 -10.56717 -9.81188 -9.13961 -8.25814 -6.35805 1.33551 1.36034 1.46189 1.49993 2.06716 2.35003 2.89236 3.07110 3.33003 3.43792 3.80230 3.88353 4.06395 4.22650 4.29938 4.31412 4.36500 4.41656 4.45044 4.53817 4.62758 4.69226 4.70638 4.76106 4.85956 4.96664 5.01865 5.02086 5.15538 5.17079 5.31457 5.39710 5.40442 5.49034 5.56037 5.65274 5.74876 6.01911 6.09414 6.28032 6.37003 6.79496 7.09020 7.32570 8.85918 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.006870 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.163737 B = 4074.488717 C = 5098.787073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.076 3.924 4 C 0.104 3.896 5 C -0.144 4.144 6 C 0.506 3.494 7 O -0.586 6.586 8 C -0.093 4.093 9 C -0.114 4.114 10 C -0.112 4.112 11 C 0.052 3.948 12 N -0.529 5.529 13 C 0.087 3.913 14 C 0.041 3.959 15 C -0.547 4.547 16 H 0.045 0.955 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.269 1.269 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.015 0.985 39 H 0.044 0.956 40 H -0.005 1.005 41 H -0.004 1.004 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 10.297 -18.053 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.048 4.048 4 C 0.013 3.987 5 C -0.184 4.184 6 C 0.296 3.704 7 O -0.467 6.467 8 C -0.131 4.131 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.075 4.075 12 N -0.253 5.253 13 C -0.040 4.040 14 C 0.004 3.996 15 C -0.585 4.585 16 H 0.063 0.937 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.194 1.194 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.158 0.842 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.015 9.593 -17.766 20.216 hybrid contribution -1.481 -0.745 1.129 2.006 sum -0.466 8.848 -16.637 18.849 Atomic orbital electron populations 1.21640 0.77576 1.03102 1.02561 1.48366 1.07184 1.07512 1.72435 1.23054 0.91216 0.86711 1.03801 1.21581 0.94573 0.94055 0.88479 1.22503 0.92626 0.97486 1.05764 1.21467 0.90892 0.84062 0.74007 1.90668 1.79822 1.23156 1.53103 1.21492 0.97279 0.94929 0.99358 1.21619 1.03332 0.95694 0.94475 1.21585 0.97743 0.99375 0.96259 1.22187 0.98674 0.86902 0.99787 1.61839 1.50289 1.09656 1.03491 1.21878 0.91734 0.95534 0.94862 1.18871 0.95186 0.95006 0.90544 1.21515 1.13592 1.27845 0.95591 0.93709 1.25841 0.96881 0.98060 0.98202 1.70085 1.34123 1.42389 1.09751 0.85553 0.79075 0.79258 0.77824 1.19902 1.19881 1.19378 0.90597 0.93468 0.89049 0.90509 0.87045 0.84183 0.89220 0.88029 0.90609 0.90896 0.89226 0.90132 0.92062 0.94348 0.93030 0.96637 0.93762 0.98639 0.98545 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.29 10.92 127.77 1.40 3.69 16 2 N -0.62 -17.71 2.63 -843.45 -2.22 -19.93 16 3 C 0.08 1.67 4.78 86.58 0.41 2.08 16 4 C 0.10 2.57 0.71 4.06 0.00 2.57 16 5 C -0.14 -4.04 5.44 30.40 0.17 -3.87 16 6 C 0.51 17.68 6.10 87.93 0.54 18.22 16 7 O -0.59 -25.90 17.67 -3.04 -0.05 -25.96 16 8 C -0.09 -1.51 4.66 30.43 0.14 -1.37 16 9 C -0.11 -1.64 5.81 30.72 0.18 -1.46 16 10 C -0.11 -2.36 6.07 30.65 0.19 -2.17 16 11 C 0.05 1.55 5.05 86.30 0.44 1.99 16 12 N -0.53 -17.85 4.47 -846.52 -3.78 -21.63 16 13 C 0.09 3.84 3.50 86.30 0.30 4.14 16 14 C 0.04 2.28 4.75 29.85 0.14 2.42 16 15 C -0.55 -33.00 9.10 25.60 0.23 -32.77 16 16 H 0.04 2.70 7.75 -2.91 -0.02 2.68 16 17 C 0.01 0.53 5.45 84.66 0.46 0.99 16 18 N -0.92 -57.31 13.29 21.45 0.29 -57.02 16 19 Si 0.96 46.45 29.54 68.60 2.03 48.48 16 20 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.42 8.04 -2.39 -0.02 1.40 16 25 H 0.09 1.83 8.13 -2.39 -0.02 1.81 16 26 H 0.08 1.78 5.74 -2.39 -0.01 1.76 16 27 H 0.11 1.63 7.78 -2.38 -0.02 1.61 16 28 H 0.14 2.84 7.86 -2.39 -0.02 2.82 16 29 H 0.09 3.02 7.38 -2.39 -0.02 3.01 16 30 H 0.10 1.05 8.05 -2.38 -0.02 1.04 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 0.89 7.58 -2.39 -0.02 0.87 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.07 6.19 -2.39 -0.01 1.05 16 37 H 0.05 1.92 6.36 -2.39 -0.02 1.91 16 38 H 0.02 0.68 7.01 -2.38 -0.02 0.67 16 39 H 0.04 2.11 5.20 -2.39 -0.01 2.10 16 40 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 41 H 0.00 -0.21 6.70 -2.39 -0.02 -0.23 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -76.26 318.23 1.84 -74.41 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.99 Total: 7.19 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 4.60 Total: -5.54 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -5.72 Total: -98.58 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -76.26 1.84 -74.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.302 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds