Wall clock time and date at job start Mon Mar 30 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46886 * 124.37698 * 2 1 4 4 C 1.54714 * 105.51554 * 163.18411 * 3 2 1 5 5 C 1.53583 * 101.50989 * 24.50716 * 4 3 2 6 6 C 1.53312 * 111.05983 * 214.99914 * 5 4 3 7 7 C 1.54507 * 104.75881 * 261.97164 * 6 5 4 8 8 C 1.54456 * 105.03959 * 0.74465 * 7 6 5 9 9 N 1.47402 * 111.05404 * 97.36401 * 5 4 3 10 10 C 1.46892 * 111.00336 * 323.09842 * 9 5 4 11 11 C 1.53003 * 109.47303 * 189.99745 * 10 9 5 12 12 C 1.53002 * 109.47104 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46994 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99852 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00048 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99754 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47085 * 120.00311 * 17 15 13 20 20 H 1.48503 * 109.47013 * 239.99951 * 17 15 13 21 21 C 1.34772 * 124.37290 * 180.02562 * 2 1 3 22 22 O 1.21282 * 125.13427 * 1.01747 * 21 2 1 23 23 H 1.09004 * 109.46748 * 359.97091 * 1 2 3 24 24 H 1.08993 * 109.47548 * 119.97174 * 1 2 3 25 25 H 1.09007 * 109.46879 * 239.98033 * 1 2 3 26 26 H 1.08996 * 110.23571 * 44.17329 * 3 2 1 27 27 H 1.09003 * 110.30663 * 282.23134 * 3 2 1 28 28 H 1.09002 * 111.01813 * 266.44822 * 4 3 2 29 29 H 1.09002 * 111.01646 * 142.56459 * 4 3 2 30 30 H 1.09006 * 110.38260 * 143.15265 * 6 5 4 31 31 H 1.08995 * 110.47686 * 20.84120 * 6 5 4 32 32 H 1.08996 * 110.32385 * 119.63384 * 7 6 5 33 33 H 1.08994 * 110.32501 * 241.85749 * 7 6 5 34 34 H 1.09002 * 110.37949 * 95.27307 * 8 7 6 35 35 H 1.09004 * 110.37730 * 217.62209 * 8 7 6 36 36 H 1.09005 * 109.47056 * 309.99457 * 10 9 5 37 37 H 1.08997 * 109.47479 * 69.99849 * 10 9 5 38 38 H 1.08992 * 109.46957 * 299.99575 * 11 10 9 39 39 H 1.08996 * 109.47054 * 60.00135 * 11 10 9 40 40 H 1.09001 * 109.46966 * 299.99966 * 12 11 10 41 41 H 1.08996 * 109.46785 * 60.00301 * 12 11 10 42 42 H 0.96995 * 119.99746 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2943 1.2123 0.0000 4 6 3.7058 0.7481 0.4313 5 6 3.6788 -0.7328 0.0251 6 6 4.4729 -1.5906 1.0170 7 6 5.8549 -1.7824 0.3532 8 6 5.7723 -1.0018 -0.9770 9 7 4.3190 -0.9336 -1.2874 10 6 4.0259 0.1853 -2.1929 11 6 4.4894 -0.1685 -3.6074 12 6 4.1835 0.9967 -4.5507 13 6 4.6406 0.6485 -5.9439 14 1 5.1026 -0.3084 -6.1372 15 6 4.4690 1.5514 -6.9716 16 7 3.9068 2.7168 -6.7359 17 14 5.0349 1.1195 -8.6986 18 1 5.6316 -0.2404 -8.6984 19 1 3.8728 1.1506 -9.6226 20 1 6.0508 2.1052 -9.1476 21 6 2.2259 -1.1124 -0.0005 22 8 1.8014 -2.2484 -0.0186 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5133 -0.8902 25 1 -0.3633 -0.5142 0.8899 26 1 1.9018 1.9376 0.7126 27 1 2.3292 1.6468 -0.9991 28 1 3.8410 0.8560 1.5075 29 1 4.4789 1.2892 -0.1143 30 1 3.9843 -2.5543 1.1616 31 1 4.5783 -1.0725 1.9701 32 1 6.6397 -1.3692 0.9866 33 1 6.0392 -2.8393 0.1611 34 1 6.1817 0.0010 -0.8547 35 1 6.3039 -1.5362 -1.7644 36 1 2.9527 0.3760 -2.1992 37 1 4.5514 1.0768 -1.8508 38 1 5.5625 -0.3592 -3.6011 39 1 3.9639 -1.0600 -3.9496 40 1 3.1103 1.1870 -4.5569 41 1 4.7087 1.8884 -4.2086 42 1 3.7857 3.3519 -7.4590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274046635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:27 Heat of formation + Delta-G solvation = -28.279841 kcal Electronic energy + Delta-G solvation = -21279.763571 eV Core-core repulsion = 18259.552247 eV Total energy + Delta-G solvation = -3020.211324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34893 -38.01230 -36.14600 -34.43531 -32.51164 -31.88157 -30.15054 -28.18602 -26.85542 -26.18589 -24.04059 -22.85931 -21.32499 -20.91554 -19.73254 -18.85585 -16.93148 -16.40633 -16.24646 -15.51278 -15.29759 -14.75404 -14.43804 -14.41099 -13.94015 -13.75503 -13.14990 -12.86451 -12.74299 -12.50970 -12.42398 -12.22270 -12.11867 -11.73966 -11.62962 -11.34103 -11.18685 -11.03415 -10.76117 -10.52567 -10.48529 -10.46502 -9.74353 -9.61951 -9.34014 -9.05440 -8.72349 -8.34518 -8.25572 -5.99810 -4.01310 2.58387 2.97671 3.31840 3.39322 3.44358 4.03000 4.26376 4.39740 4.48056 4.63482 4.80291 4.89128 4.98589 5.09812 5.21182 5.35629 5.36382 5.38664 5.44516 5.54895 5.58066 5.64329 5.66934 5.80749 5.82316 5.84043 6.01079 6.09396 6.17366 6.27167 6.48445 6.64181 6.74838 6.94220 7.07861 7.18474 7.28762 7.68194 7.82314 8.00577 8.25525 8.44615 9.05862 9.62859 11.11774 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.004833 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.194199 B = 5791.788486 C = 6424.790411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.627 5.627 3 C 0.099 3.901 4 C -0.159 4.159 5 C 0.059 3.941 6 C -0.105 4.105 7 C -0.121 4.121 8 C 0.035 3.965 9 N -0.483 5.483 10 C 0.038 3.962 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.543 3.457 22 O -0.517 6.517 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -2.280 18.543 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.363 5.363 3 C -0.024 4.024 4 C -0.198 4.198 5 C -0.035 4.035 6 C -0.143 4.143 7 C -0.160 4.160 8 C -0.093 4.093 9 N -0.208 5.208 10 C -0.089 4.089 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.329 3.671 22 O -0.391 6.391 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.310 -3.220 18.166 18.495 hybrid contribution 0.418 0.875 -0.745 1.222 sum -0.892 -2.345 17.421 17.601 Atomic orbital electron populations 1.21505 0.78020 1.02515 1.02131 1.48253 1.06414 1.07388 1.74198 1.22278 0.90310 0.87264 1.02546 1.23176 0.97383 0.96578 1.02693 1.21964 0.93660 0.94728 0.93163 1.22137 0.95351 1.00371 0.96456 1.22356 0.96342 1.01356 0.95908 1.23206 0.89279 0.99446 0.97356 1.65174 1.06751 1.42406 1.06423 1.22714 1.00992 0.90692 0.94459 1.21597 0.99799 1.01019 0.91589 1.19068 0.96785 0.92370 0.93216 1.21287 1.39057 1.01662 0.93464 0.92600 1.25019 0.95349 0.95052 0.99064 1.69972 1.44148 1.07313 1.32283 0.86547 0.78404 0.78489 0.84652 1.19695 1.21019 1.21048 1.20153 0.88026 0.84202 0.74742 1.90666 1.78429 1.20870 1.49119 0.90519 0.91869 0.92242 0.90416 0.90140 0.89600 0.88474 0.89989 0.90938 0.91223 0.90768 0.93366 0.89357 0.91115 0.94191 0.93350 0.92617 0.96763 0.96822 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.94 59.85 0.65 1.73 16 2 N -0.63 -8.25 3.28 -180.40 -0.59 -8.84 16 3 C 0.10 1.08 6.38 -2.93 -0.02 1.06 16 4 C -0.16 -1.69 5.59 -25.53 -0.14 -1.84 16 5 C 0.06 0.80 0.68 -132.26 -0.09 0.71 16 6 C -0.10 -1.22 6.15 -25.78 -0.16 -1.38 16 7 C -0.12 -1.31 7.01 -25.18 -0.18 -1.48 16 8 C 0.03 0.46 5.62 -2.03 -0.01 0.44 16 9 N -0.48 -7.62 5.05 -217.15 -1.10 -8.71 16 10 C 0.04 0.67 3.41 -3.83 -0.01 0.65 16 11 C -0.10 -2.16 5.27 -26.73 -0.14 -2.30 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.54 8.67 6.80 -11.23 -0.08 8.59 16 22 O -0.52 -10.06 17.22 5.56 0.10 -9.97 16 23 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.97 6.48 -51.93 -0.34 0.63 16 28 H 0.09 0.73 7.52 -51.93 -0.39 0.34 16 29 H 0.10 1.04 5.59 -51.93 -0.29 0.75 16 30 H 0.08 1.08 7.52 -51.93 -0.39 0.69 16 31 H 0.07 0.67 7.46 -51.93 -0.39 0.28 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.59 7.29 -51.93 -0.38 0.22 16 35 H 0.09 1.21 7.91 -51.93 -0.41 0.80 16 36 H 0.07 1.27 5.71 -51.93 -0.30 0.98 16 37 H 0.04 0.64 5.96 -51.93 -0.31 0.33 16 38 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -33.50 325.30 -8.62 -42.12 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.92 Total: -3.15 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.72 Total: -6.94 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.95 Total: -43.80 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.10 Total: -9.97 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.50 -8.62 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274046635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.843 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds