Wall clock time and date at job start Mon Mar 30 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46886 * 124.37698 * 2 1 4 4 C 1.54714 * 105.51554 * 163.18411 * 3 2 1 5 5 C 1.53583 * 101.50989 * 24.50716 * 4 3 2 6 6 C 1.53312 * 111.05983 * 214.99914 * 5 4 3 7 7 C 1.54507 * 104.75881 * 261.97164 * 6 5 4 8 8 C 1.54456 * 105.03959 * 0.74465 * 7 6 5 9 9 N 1.47402 * 111.05404 * 97.36401 * 5 4 3 10 10 C 1.46892 * 111.00336 * 323.09842 * 9 5 4 11 11 C 1.53003 * 109.47303 * 189.99745 * 10 9 5 12 12 C 1.53002 * 109.47104 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46994 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99852 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00048 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99754 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47085 * 120.00311 * 17 15 13 20 20 H 1.48503 * 109.47013 * 239.99951 * 17 15 13 21 21 C 1.34772 * 124.37290 * 180.02562 * 2 1 3 22 22 O 1.21282 * 125.13427 * 1.01747 * 21 2 1 23 23 H 1.09004 * 109.46748 * 359.97091 * 1 2 3 24 24 H 1.08993 * 109.47548 * 119.97174 * 1 2 3 25 25 H 1.09007 * 109.46879 * 239.98033 * 1 2 3 26 26 H 1.08996 * 110.23571 * 44.17329 * 3 2 1 27 27 H 1.09003 * 110.30663 * 282.23134 * 3 2 1 28 28 H 1.09002 * 111.01813 * 266.44822 * 4 3 2 29 29 H 1.09002 * 111.01646 * 142.56459 * 4 3 2 30 30 H 1.09006 * 110.38260 * 143.15265 * 6 5 4 31 31 H 1.08995 * 110.47686 * 20.84120 * 6 5 4 32 32 H 1.08996 * 110.32385 * 119.63384 * 7 6 5 33 33 H 1.08994 * 110.32501 * 241.85749 * 7 6 5 34 34 H 1.09002 * 110.37949 * 95.27307 * 8 7 6 35 35 H 1.09004 * 110.37730 * 217.62209 * 8 7 6 36 36 H 1.09005 * 109.47056 * 309.99457 * 10 9 5 37 37 H 1.08997 * 109.47479 * 69.99849 * 10 9 5 38 38 H 1.08992 * 109.46957 * 299.99575 * 11 10 9 39 39 H 1.08996 * 109.47054 * 60.00135 * 11 10 9 40 40 H 1.09001 * 109.46966 * 299.99966 * 12 11 10 41 41 H 1.08996 * 109.46785 * 60.00301 * 12 11 10 42 42 H 0.96995 * 119.99746 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2943 1.2123 0.0000 4 6 3.7058 0.7481 0.4313 5 6 3.6788 -0.7328 0.0251 6 6 4.4729 -1.5906 1.0170 7 6 5.8549 -1.7824 0.3532 8 6 5.7723 -1.0018 -0.9770 9 7 4.3190 -0.9336 -1.2874 10 6 4.0259 0.1853 -2.1929 11 6 4.4894 -0.1685 -3.6074 12 6 4.1835 0.9967 -4.5507 13 6 4.6406 0.6485 -5.9439 14 1 5.1026 -0.3084 -6.1372 15 6 4.4690 1.5514 -6.9716 16 7 3.9068 2.7168 -6.7359 17 14 5.0349 1.1195 -8.6986 18 1 5.6316 -0.2404 -8.6984 19 1 3.8728 1.1506 -9.6226 20 1 6.0508 2.1052 -9.1476 21 6 2.2259 -1.1124 -0.0005 22 8 1.8014 -2.2484 -0.0186 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5133 -0.8902 25 1 -0.3633 -0.5142 0.8899 26 1 1.9018 1.9376 0.7126 27 1 2.3292 1.6468 -0.9991 28 1 3.8410 0.8560 1.5075 29 1 4.4789 1.2892 -0.1143 30 1 3.9843 -2.5543 1.1616 31 1 4.5783 -1.0725 1.9701 32 1 6.6397 -1.3692 0.9866 33 1 6.0392 -2.8393 0.1611 34 1 6.1817 0.0010 -0.8547 35 1 6.3039 -1.5362 -1.7644 36 1 2.9527 0.3760 -2.1992 37 1 4.5514 1.0768 -1.8508 38 1 5.5625 -0.3592 -3.6011 39 1 3.9639 -1.0600 -3.9496 40 1 3.1103 1.1870 -4.5569 41 1 4.7087 1.8884 -4.2086 42 1 3.7857 3.3519 -7.4590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274046635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:26 Heat of formation + Delta-G solvation = -51.463669 kcal Electronic energy + Delta-G solvation = -21280.768897 eV Core-core repulsion = 18259.552247 eV Total energy + Delta-G solvation = -3021.216650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41561 -39.18995 -37.26298 -36.21961 -34.33702 -32.81048 -31.76531 -29.16700 -28.04638 -27.74115 -25.25770 -24.35703 -22.58949 -22.09992 -21.14988 -19.96234 -18.50676 -17.97607 -17.42075 -16.64416 -16.47073 -16.34915 -16.08807 -15.49820 -15.07984 -14.86936 -14.41033 -14.28652 -13.92719 -13.84299 -13.70083 -13.54516 -13.20669 -13.10815 -12.89833 -12.69060 -12.46697 -12.40323 -12.28729 -12.15152 -11.98452 -11.45734 -11.38502 -11.30537 -11.13116 -10.90356 -10.56289 -9.77636 -9.39908 -8.21588 -6.31812 1.38562 1.39122 1.39922 1.52722 2.01394 2.40067 2.96433 3.11720 3.27614 3.42646 3.69024 3.88337 3.93750 4.10463 4.20467 4.21015 4.33322 4.38411 4.50264 4.52279 4.63750 4.66454 4.70369 4.79058 4.83558 4.88372 4.90404 5.00739 5.04652 5.07870 5.14584 5.23652 5.28338 5.49618 5.53740 5.71297 5.84017 5.86357 5.98113 6.06592 6.26716 6.83982 7.10650 7.37259 8.90384 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.004833 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.194199 B = 5791.788486 C = 6424.790411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.626 5.626 3 C 0.094 3.906 4 C -0.149 4.149 5 C 0.054 3.946 6 C -0.102 4.102 7 C -0.112 4.112 8 C 0.031 3.969 9 N -0.510 5.510 10 C 0.056 3.944 11 C -0.088 4.088 12 C 0.031 3.969 13 C -0.543 4.543 14 H 0.054 0.946 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.526 3.474 22 O -0.567 6.567 23 H 0.108 0.892 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.035 0.965 40 H -0.012 1.012 41 H 0.000 1.000 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -1.405 19.771 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.360 5.360 3 C -0.028 4.028 4 C -0.188 4.188 5 C -0.039 4.039 6 C -0.140 4.140 7 C -0.150 4.150 8 C -0.096 4.096 9 N -0.235 5.235 10 C -0.071 4.071 11 C -0.126 4.126 12 C -0.007 4.007 13 C -0.581 4.581 14 H 0.072 0.928 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.787 3.213 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.199 1.199 21 C 0.313 3.687 22 O -0.445 6.445 23 H 0.126 0.874 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.006 0.994 41 H 0.018 0.982 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.160 -2.314 19.407 19.545 hybrid contribution 0.002 0.617 -1.131 1.289 sum -0.158 -1.696 18.276 18.355 Atomic orbital electron populations 1.21682 0.77021 1.04444 1.01642 1.48479 1.07413 1.07535 1.72525 1.22477 0.90612 0.86900 1.02848 1.23197 0.97051 0.93832 1.04710 1.22062 0.92189 0.97237 0.92395 1.22170 0.95058 0.99374 0.97416 1.22341 0.96783 1.01014 0.94875 1.23292 0.87471 1.00489 0.98385 1.65014 1.08766 1.41771 1.07914 1.22367 1.00191 0.91917 0.92661 1.21340 0.99858 0.98121 0.93295 1.18927 0.94682 0.93513 0.93559 1.21692 1.39522 1.01823 0.95106 0.92776 1.25919 0.95218 0.94841 1.03527 1.70081 1.44878 1.08283 1.33857 0.85440 0.78175 0.78602 0.79094 1.18992 1.20398 1.19936 1.20739 0.89562 0.84109 0.74261 1.90623 1.79475 1.22805 1.51594 0.87364 0.93722 0.91437 0.86759 0.91673 0.86339 0.88246 0.92176 0.87701 0.88022 0.91179 0.92024 0.90541 0.92353 0.92625 0.92825 0.94626 0.99366 0.98175 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 10.94 127.77 1.40 3.35 16 2 N -0.63 -15.92 3.28 -843.06 -2.77 -18.69 16 3 C 0.09 1.83 6.38 86.89 0.55 2.38 16 4 C -0.15 -2.71 5.59 31.37 0.18 -2.54 16 5 C 0.05 1.40 0.68 2.83 0.00 1.40 16 6 C -0.10 -2.15 6.15 31.21 0.19 -1.96 16 7 C -0.11 -2.13 7.01 31.60 0.22 -1.91 16 8 C 0.03 0.76 5.62 86.44 0.49 1.24 16 9 N -0.51 -15.84 5.05 -840.94 -4.25 -20.09 16 10 C 0.06 1.95 3.41 86.31 0.29 2.24 16 11 C -0.09 -3.82 5.27 30.60 0.16 -3.66 16 12 C 0.03 1.64 4.97 29.85 0.15 1.79 16 13 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 15 C 0.00 0.16 5.46 84.65 0.46 0.63 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 17 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.53 16.79 6.80 87.50 0.59 17.39 16 22 O -0.57 -22.85 17.22 -3.03 -0.05 -22.90 16 23 H 0.11 1.53 8.07 -2.38 -0.02 1.51 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.50 6.48 -2.39 -0.02 1.48 16 28 H 0.12 1.42 7.52 -2.39 -0.02 1.40 16 29 H 0.10 1.81 5.59 -2.39 -0.01 1.80 16 30 H 0.06 1.55 7.52 -2.38 -0.02 1.53 16 31 H 0.10 1.52 7.46 -2.39 -0.02 1.50 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.36 7.29 -2.39 -0.02 1.34 16 35 H 0.08 2.04 7.91 -2.38 -0.02 2.02 16 36 H 0.06 2.15 5.71 -2.38 -0.01 2.13 16 37 H 0.06 1.73 5.96 -2.39 -0.01 1.72 16 38 H 0.05 2.24 7.51 -2.39 -0.02 2.22 16 39 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -74.78 325.30 1.15 -73.63 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.99 Total: 8.45 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.92 Total: -11.08 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -6.73 Total: -94.97 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.78 1.15 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274046635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.163 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds