Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99703 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00285 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00110 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46931 * 59.99781 * 11 9 7 13 13 H 1.48500 * 109.47159 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46990 * 299.99945 * 11 9 7 15 15 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 2 1 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 2 1 18 18 H 1.08995 * 115.55593 * 33.98248 * 17 15 2 19 19 C 1.53122 * 117.50998 * 248.18318 * 17 15 2 20 20 C 1.52455 * 117.50993 * 179.72223 * 17 15 2 21 21 C 1.53256 * 128.59143 * 349.84723 * 20 17 15 22 22 C 1.53888 * 86.88458 * 194.88903 * 21 20 17 23 23 C 1.53259 * 128.58398 * 225.04461 * 20 17 15 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 30 30 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 31 31 H 1.09006 * 109.47343 * 300.00688 * 5 4 3 32 32 H 1.09005 * 109.46868 * 60.00504 * 5 4 3 33 33 H 0.96998 * 119.99783 * 0.02562 * 6 5 4 34 34 H 0.96997 * 120.00450 * 180.02562 * 10 9 7 35 35 H 1.08999 * 117.51879 * 0.02562 * 19 17 15 36 36 H 1.09001 * 117.51196 * 145.10035 * 19 17 15 37 37 H 1.09000 * 113.64159 * 309.39000 * 21 20 17 38 38 H 1.08994 * 113.64575 * 80.38766 * 21 20 17 39 39 H 1.08999 * 113.58484 * 270.38645 * 22 21 20 40 40 H 1.08998 * 113.58634 * 139.57399 * 22 21 20 41 41 H 1.09003 * 113.64545 * 279.61348 * 23 20 17 42 42 H 1.09001 * 113.64367 * 50.61381 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4606 3.4589 -2.8239 7 6 4.1336 4.6249 -3.0741 8 1 4.4843 5.2328 -2.2533 9 6 4.3640 5.0261 -4.3828 10 7 3.9362 4.2855 -5.3832 11 14 5.2815 6.6171 -4.7243 12 1 6.6391 6.5435 -4.1272 13 1 5.3965 6.8171 -6.1912 14 1 4.5385 7.7551 -4.1257 15 6 2.1390 -1.1672 0.0005 16 8 3.3518 -1.1671 0.0010 17 6 1.3855 -2.4723 -0.0053 18 1 0.4467 -2.4707 -0.5589 19 6 1.4637 -3.3397 1.2541 20 6 2.2045 -3.7582 -0.0110 21 6 3.7126 -3.9302 -0.2228 22 6 3.4261 -5.4260 -0.4433 23 6 2.0041 -5.0153 -0.8643 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 3.0417 0.9508 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 2.6274 3.7952 -0.9289 32 1 4.1693 2.9059 -0.9286 33 1 3.1453 2.9131 -3.5611 34 1 4.0975 4.5656 -6.2977 35 1 2.0596 -2.9661 2.0868 36 1 0.5758 -3.9089 1.5294 37 1 4.0901 -3.4219 -1.1100 38 1 4.3054 -3.7253 0.6686 39 1 3.4566 -6.0155 0.4730 40 1 4.0098 -5.8674 -1.2510 41 1 1.2272 -5.6805 -0.4872 42 1 1.9060 -4.8091 -1.9302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276253214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = 22.590281 kcal Electronic energy + Delta-G solvation = -19981.480494 eV Core-core repulsion = 16963.475064 eV Total energy + Delta-G solvation = -3018.005430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52990 -38.69290 -36.03987 -34.76990 -33.85300 -32.13044 -29.80531 -26.89421 -25.95351 -25.76534 -23.78757 -23.23713 -22.17799 -20.84360 -19.24123 -18.29573 -17.31187 -16.99641 -16.17849 -15.53208 -15.37104 -14.85962 -14.68584 -14.37947 -14.04963 -13.29174 -13.14706 -13.00569 -12.79712 -12.53147 -12.46495 -12.17357 -11.90584 -11.83542 -11.71806 -11.52583 -10.88462 -10.80294 -10.70789 -10.49624 -10.35758 -10.25595 -10.06898 -9.90614 -9.69205 -9.55392 -8.81781 -8.59470 -6.86827 -5.71227 -2.99900 2.50728 2.96951 3.47775 3.51437 3.53037 3.57635 4.11249 4.43136 4.48918 4.60988 4.64134 4.72183 4.78240 5.03846 5.19109 5.19863 5.28019 5.37945 5.41343 5.50377 5.52471 5.59429 5.61427 5.66976 5.71958 5.73510 5.75248 5.98370 6.01479 6.13723 6.15817 6.28549 6.35155 6.43980 6.60386 6.91549 6.94162 7.41047 7.74008 8.25436 8.47764 9.58366 10.17346 10.52115 11.51868 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.003287 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.194099 B = 8515.900142 C = 9041.107811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.119 3.881 4 C -0.138 4.138 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.541 3.459 16 O -0.529 6.529 17 C -0.179 4.179 18 H 0.123 0.877 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.083 4.083 22 C -0.143 4.143 23 C -0.099 4.099 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 -18.734 13.872 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.347 5.347 3 C -0.003 4.003 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.328 3.672 16 O -0.406 6.406 17 C -0.200 4.200 18 H 0.141 0.859 19 C -0.159 4.159 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.180 4.180 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.944 -18.560 13.893 24.850 hybrid contribution 0.091 0.913 -0.590 1.090 sum -8.853 -17.648 13.304 23.808 Atomic orbital electron populations 1.21808 0.79702 1.03319 1.01614 1.47839 1.06969 1.06202 1.73649 1.21482 0.97439 0.83454 0.97934 1.22050 1.01006 0.98916 0.95746 1.20542 0.96030 0.91903 0.88688 1.42349 1.68344 1.25941 1.01116 1.19212 1.27877 0.98149 0.91803 0.91202 1.24752 1.01761 0.99070 0.95551 1.69656 1.51582 1.38982 0.98162 0.86243 0.79713 0.83267 0.76829 1.21244 1.21681 1.21281 1.19630 0.87404 0.84149 0.75977 1.90709 1.13647 1.87079 1.49118 1.22211 1.02215 0.90514 1.05065 0.85931 1.22761 1.02017 1.00466 0.90660 1.22302 0.96727 0.93685 1.00071 1.22332 0.92484 0.94456 1.02723 1.22813 0.96621 0.97091 1.01464 1.22507 0.97599 0.94182 0.99299 0.92679 0.90753 0.91137 0.90582 0.89841 0.91626 0.92078 0.96435 0.96233 0.78333 0.93499 0.88168 0.87773 0.89223 0.91306 0.90262 0.91214 0.91359 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.27 59.85 0.61 1.31 16 2 N -0.61 -7.84 2.87 -181.57 -0.52 -8.36 16 3 C 0.12 1.72 5.41 -4.04 -0.02 1.70 16 4 C -0.14 -2.46 5.65 -26.73 -0.15 -2.61 16 5 C 0.16 3.36 6.26 -4.04 -0.03 3.34 16 6 N -0.73 -19.83 5.60 -59.91 -0.34 -20.16 16 7 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 10 N -0.94 -29.29 13.06 55.49 0.72 -28.57 16 11 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.54 7.63 7.46 -10.98 -0.08 7.55 16 16 O -0.53 -9.46 14.72 5.55 0.08 -9.38 16 17 C -0.18 -1.88 5.30 -91.99 -0.49 -2.37 16 18 H 0.12 1.05 6.43 -51.93 -0.33 0.72 16 19 C -0.12 -1.06 10.24 -26.94 -0.28 -1.34 16 20 C -0.13 -1.30 2.87 -154.80 -0.45 -1.74 16 21 C -0.08 -0.94 6.47 -26.14 -0.17 -1.11 16 22 C -0.14 -1.22 8.08 -25.81 -0.21 -1.43 16 23 C -0.10 -0.83 8.10 -26.14 -0.21 -1.04 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 26 H 0.07 0.51 5.99 -51.93 -0.31 0.20 16 27 H 0.08 0.93 8.07 -51.93 -0.42 0.52 16 28 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.87 7.67 -40.82 -0.31 10.56 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -34.21 344.26 -8.81 -43.02 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.22 Total: 5.70 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.71 Total: -5.48 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.13 Total: -57.09 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.21 -8.81 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276253214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.611 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds