Wall clock time and date at job start Mon Mar 30 2020 01:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99703 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00285 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00110 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46931 * 59.99781 * 11 9 7 13 13 H 1.48500 * 109.47159 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46990 * 299.99945 * 11 9 7 15 15 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 2 1 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 2 1 18 18 H 1.08995 * 115.55593 * 33.98248 * 17 15 2 19 19 C 1.53122 * 117.50998 * 248.18318 * 17 15 2 20 20 C 1.52455 * 117.50993 * 179.72223 * 17 15 2 21 21 C 1.53256 * 128.59143 * 349.84723 * 20 17 15 22 22 C 1.53888 * 86.88458 * 194.88903 * 21 20 17 23 23 C 1.53259 * 128.58398 * 225.04461 * 20 17 15 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 1.08999 * 109.47707 * 300.00330 * 4 3 2 30 30 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 31 31 H 1.09006 * 109.47343 * 300.00688 * 5 4 3 32 32 H 1.09005 * 109.46868 * 60.00504 * 5 4 3 33 33 H 0.96998 * 119.99783 * 0.02562 * 6 5 4 34 34 H 0.96997 * 120.00450 * 180.02562 * 10 9 7 35 35 H 1.08999 * 117.51879 * 0.02562 * 19 17 15 36 36 H 1.09001 * 117.51196 * 145.10035 * 19 17 15 37 37 H 1.09000 * 113.64159 * 309.39000 * 21 20 17 38 38 H 1.08994 * 113.64575 * 80.38766 * 21 20 17 39 39 H 1.08999 * 113.58484 * 270.38645 * 22 21 20 40 40 H 1.08998 * 113.58634 * 139.57399 * 22 21 20 41 41 H 1.09003 * 113.64545 * 279.61348 * 23 20 17 42 42 H 1.09001 * 113.64367 * 50.61381 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4606 3.4589 -2.8239 7 6 4.1336 4.6249 -3.0741 8 1 4.4843 5.2328 -2.2533 9 6 4.3640 5.0261 -4.3828 10 7 3.9362 4.2855 -5.3832 11 14 5.2815 6.6171 -4.7243 12 1 6.6391 6.5435 -4.1272 13 1 5.3965 6.8171 -6.1912 14 1 4.5385 7.7551 -4.1257 15 6 2.1390 -1.1672 0.0005 16 8 3.3518 -1.1671 0.0010 17 6 1.3855 -2.4723 -0.0053 18 1 0.4467 -2.4707 -0.5589 19 6 1.4637 -3.3397 1.2541 20 6 2.2045 -3.7582 -0.0110 21 6 3.7126 -3.9302 -0.2228 22 6 3.4261 -5.4260 -0.4433 23 6 2.0041 -5.0153 -0.8643 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 3.0417 0.9508 -1.9563 30 1 1.5001 1.8406 -1.9564 31 1 2.6274 3.7952 -0.9289 32 1 4.1693 2.9059 -0.9286 33 1 3.1453 2.9131 -3.5611 34 1 4.0975 4.5656 -6.2977 35 1 2.0596 -2.9661 2.0868 36 1 0.5758 -3.9089 1.5294 37 1 4.0901 -3.4219 -1.1100 38 1 4.3054 -3.7253 0.6686 39 1 3.4566 -6.0155 0.4730 40 1 4.0098 -5.8674 -1.2510 41 1 1.2272 -5.6805 -0.4872 42 1 1.9060 -4.8091 -1.9302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276253214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:01 Heat of formation + Delta-G solvation = 1.176009 kcal Electronic energy + Delta-G solvation = -19982.409086 eV Core-core repulsion = 16963.475064 eV Total energy + Delta-G solvation = -3018.934022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46146 -39.60806 -37.48264 -36.37640 -34.74783 -33.93055 -31.60394 -27.98611 -27.23474 -26.57407 -25.41673 -23.96825 -23.60296 -22.41776 -20.17123 -19.18763 -19.12765 -18.27641 -17.27118 -16.60164 -16.49363 -16.09624 -16.02944 -15.70027 -15.39039 -15.14972 -14.78004 -14.06098 -13.64925 -13.57231 -13.40170 -13.24487 -13.19265 -12.94086 -12.75062 -12.72748 -12.48138 -12.40300 -12.26776 -12.11487 -11.86439 -11.82730 -11.26566 -11.01791 -10.96753 -10.74079 -10.57682 -9.66224 -9.06396 -7.98678 -5.29410 1.44684 1.49329 1.49523 1.55488 1.99572 2.53919 2.78019 3.32239 3.34411 3.68469 3.72020 3.83262 3.86940 3.93005 3.97321 4.09921 4.23245 4.35202 4.49549 4.51101 4.56613 4.59858 4.71275 4.73760 4.79805 4.84641 4.86238 4.88952 4.95514 5.06058 5.08607 5.15203 5.24996 5.26175 5.39727 5.44548 5.51780 5.55317 6.22946 6.41592 7.20453 7.28336 8.02849 8.27017 9.25040 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.003287 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.194099 B = 8515.900142 C = 9041.107811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.128 3.872 4 C -0.120 4.120 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.253 4.253 8 H 0.077 0.923 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.278 1.278 13 H -0.293 1.293 14 H -0.273 1.273 15 C 0.528 3.472 16 O -0.581 6.581 17 C -0.186 4.186 18 H 0.149 0.851 19 C -0.098 4.098 20 C -0.143 4.143 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.088 4.088 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.012 0.988 33 H 0.372 0.628 34 H 0.253 0.747 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -19.241 15.198 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.345 5.345 3 C 0.004 3.996 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.385 4.385 8 H 0.095 0.905 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.808 3.192 12 H -0.204 1.204 13 H -0.219 1.219 14 H -0.199 1.199 15 C 0.318 3.682 16 O -0.461 6.461 17 C -0.206 4.206 18 H 0.166 0.834 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.170 4.170 23 C -0.125 4.125 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.013 -19.067 15.269 26.795 hybrid contribution 0.740 1.071 -0.950 1.612 sum -10.273 -17.996 14.319 25.188 Atomic orbital electron populations 1.22104 0.76819 1.04499 1.03525 1.47960 1.08721 1.05115 1.72732 1.21283 0.97736 0.85253 0.95327 1.21845 0.99990 0.96040 0.98004 1.20698 0.96377 0.94034 0.86051 1.42602 1.68281 1.25437 1.02899 1.19660 1.27670 0.98878 0.92289 0.90463 1.25679 1.03115 1.02808 0.95352 1.69827 1.53125 1.40923 0.98333 0.85119 0.78523 0.79168 0.76381 1.20441 1.21863 1.19872 1.20398 0.87145 0.85700 0.74958 1.90688 1.16025 1.87907 1.51480 1.22257 1.02690 0.88507 1.07175 0.83393 1.22873 1.02473 0.98911 0.89270 1.22493 0.95553 0.94399 1.01943 1.22295 0.93779 0.96891 1.00609 1.22805 0.96967 0.94908 1.02296 1.22463 0.97881 0.93295 0.98825 0.90332 0.90350 0.89268 0.87579 0.91752 0.94743 0.91433 0.94730 0.96967 0.79681 0.93853 0.89248 0.84191 0.92388 0.93057 0.88750 0.90884 0.88808 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.27 127.77 1.31 2.36 16 2 N -0.61 -15.02 2.87 -846.74 -2.43 -17.45 16 3 C 0.13 3.62 5.41 86.38 0.47 4.08 16 4 C -0.12 -4.31 5.65 30.59 0.17 -4.14 16 5 C 0.16 6.72 6.26 86.38 0.54 7.26 16 6 N -0.75 -41.27 5.60 -343.45 -1.92 -43.20 16 7 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 10 N -0.97 -61.88 13.06 21.65 0.28 -61.60 16 11 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.53 14.94 7.46 87.66 0.65 15.59 16 16 O -0.58 -21.97 14.72 -3.04 -0.04 -22.01 16 17 C -0.19 -3.58 5.30 -11.68 -0.06 -3.64 16 18 H 0.15 2.05 6.43 -2.39 -0.02 2.04 16 19 C -0.10 -1.46 10.24 30.46 0.31 -1.15 16 20 C -0.14 -2.76 2.87 -52.37 -0.15 -2.91 16 21 C -0.10 -2.35 6.47 30.98 0.20 -2.15 16 22 C -0.13 -2.15 8.08 31.19 0.25 -1.90 16 23 C -0.09 -1.28 8.10 30.98 0.25 -1.03 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 26 H 0.09 0.98 5.99 -2.39 -0.01 0.97 16 27 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 28 H 0.06 2.09 7.42 -2.38 -0.02 2.07 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.37 21.75 7.67 -92.71 -0.71 21.04 16 34 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.55 344.26 3.44 -73.11 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.28 Total: 27.52 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.26 Total: -5.94 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.07 Total: -122.25 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.01 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -76.55 3.44 -73.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276253214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.282 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds