Wall clock time and date at job start Mon Mar 30 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00353 * 2 1 4 4 H 1.07999 * 120.00177 * 204.59587 * 3 2 1 5 5 C 1.38807 * 119.99761 * 24.59829 * 3 2 1 6 6 N 1.31619 * 120.00562 * 7.03930 * 5 3 2 7 7 Si 1.86802 * 120.00027 * 187.03776 * 5 3 2 8 8 H 1.48503 * 109.47255 * 89.99858 * 7 5 3 9 9 H 1.48500 * 109.47627 * 209.99940 * 7 5 3 10 10 H 1.48504 * 109.47021 * 330.00329 * 7 5 3 11 11 C 1.46503 * 119.99782 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47229 * 95.95805 * 11 2 1 13 13 H 1.09004 * 109.87822 * 55.31782 * 12 11 2 14 14 C 1.54329 * 109.88536 * 294.29856 * 12 11 2 15 15 C 1.55152 * 102.94573 * 218.38998 * 14 12 11 16 16 C 1.54918 * 101.58057 * 35.50003 * 15 14 12 17 17 N 1.47030 * 109.88175 * 176.49046 * 12 11 2 18 18 C 1.34769 * 125.65034 * 298.32048 * 17 12 11 19 19 O 1.21284 * 119.99848 * 5.24016 * 18 17 12 20 20 C 1.50696 * 120.00357 * 185.23489 * 18 17 12 21 21 C 1.53780 * 113.61744 * 277.50320 * 20 18 17 22 22 C 1.53778 * 87.07828 * 220.01567 * 21 20 18 23 23 C 1.53777 * 87.08606 * 25.43157 * 22 21 20 24 24 H 1.08997 * 109.47185 * 275.21119 * 1 2 3 25 25 H 1.09009 * 109.47021 * 35.20597 * 1 2 3 26 26 H 1.08995 * 109.47546 * 155.20731 * 1 2 3 27 27 H 0.96997 * 120.00298 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47139 * 335.95620 * 11 2 1 29 29 H 1.09002 * 109.47238 * 215.95999 * 11 2 1 30 30 H 1.09003 * 110.71707 * 336.75454 * 14 12 11 31 31 H 1.08999 * 110.71955 * 100.02427 * 14 12 11 32 32 H 1.09001 * 111.00792 * 153.57193 * 15 14 12 33 33 H 1.08996 * 111.00835 * 277.43112 * 15 14 12 34 34 H 1.08995 * 110.36518 * 204.14888 * 16 15 14 35 35 H 1.09001 * 110.45822 * 81.87513 * 16 15 14 36 36 H 1.09006 * 112.84506 * 48.81093 * 20 18 17 37 37 H 1.09001 * 113.61427 * 334.56629 * 21 20 18 38 38 H 1.09001 * 113.61501 * 105.46984 * 21 20 18 39 39 H 1.09001 * 113.61537 * 270.87992 * 22 21 20 40 40 H 1.09001 * 113.61496 * 139.98116 * 22 21 20 41 41 H 1.09001 * 113.61542 * 220.01727 * 23 22 21 42 42 H 1.08996 * 113.61605 * 89.11163 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1562 1.2283 -0.3893 5 6 1.5502 2.3334 0.5004 6 7 0.3810 2.2573 1.1001 7 14 2.4027 3.9861 0.3227 8 1 1.9859 4.6236 -0.9521 9 1 2.0258 4.8625 1.4608 10 1 3.8742 3.7860 0.3182 11 6 2.1974 -1.2688 -0.0006 12 6 2.5821 -1.6350 -1.4354 13 1 3.1439 -0.8181 -1.8884 14 6 1.3111 -1.9203 -2.2630 15 6 1.7397 -3.1128 -3.1582 16 6 2.6718 -3.8994 -2.2031 17 7 3.3899 -2.8635 -1.4384 18 6 4.5885 -3.0169 -0.8418 19 8 5.0442 -2.1247 -0.1582 20 6 5.3626 -4.2970 -1.0239 21 6 4.9159 -5.4266 -0.0809 22 6 6.4046 -5.7800 0.0731 23 6 6.7083 -4.3144 -0.2798 24 1 -0.3633 0.0933 1.0234 25 1 -0.3633 0.8398 -0.5925 26 1 -0.3634 -0.9329 -0.4309 27 1 -0.0380 3.0593 1.4494 28 1 1.5663 -2.0528 0.4178 29 1 3.0995 -1.1678 0.6030 30 1 0.4833 -2.2039 -1.6131 31 1 1.0458 -1.0564 -2.8724 32 1 0.8778 -3.7146 -3.4464 33 1 2.2835 -2.7661 -4.0369 34 1 3.3753 -4.5057 -2.7737 35 1 2.0867 -4.5287 -1.5324 36 1 5.4370 -4.6016 -2.0679 37 1 4.4543 -5.0698 0.8398 38 1 4.3317 -6.2027 -0.5753 39 1 6.7636 -6.4916 -0.6705 40 1 6.6859 -6.0514 1.0906 41 1 7.5711 -4.1927 -0.9347 42 1 6.7366 -3.6536 0.5865 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281918560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:50 Heat of formation + Delta-G solvation = -11.090189 kcal Electronic energy + Delta-G solvation = -21285.846125 eV Core-core repulsion = 18266.380200 eV Total energy + Delta-G solvation = -3019.465924 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49578 -39.47068 -37.85968 -37.11705 -33.59260 -32.51182 -30.71193 -28.05636 -27.59145 -26.80317 -26.50171 -24.06942 -22.78368 -21.98567 -20.74176 -19.66314 -18.74696 -18.21607 -17.46948 -16.78398 -16.46973 -16.07226 -15.54741 -15.35835 -15.14056 -14.81794 -14.33037 -14.08226 -13.84120 -13.64668 -13.39030 -13.14186 -13.03156 -12.90648 -12.79508 -12.60009 -12.38241 -12.18447 -12.10938 -11.99251 -11.92932 -11.60147 -11.49659 -11.38141 -11.25994 -10.68888 -10.56314 -9.68229 -8.73105 -7.86244 -5.37874 1.39562 1.41381 1.51146 1.67494 2.06354 2.47590 3.25850 3.48819 3.64295 3.67136 3.72741 3.80796 3.92342 3.94713 4.06185 4.20629 4.37406 4.42272 4.52093 4.69139 4.74229 4.81703 4.82642 4.88544 4.91466 5.01875 5.04488 5.07537 5.11242 5.13577 5.18540 5.21393 5.30663 5.42538 5.51508 5.57293 5.60983 5.71202 6.29858 6.68743 7.13525 7.27496 7.83365 8.25805 9.15525 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.005408 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.380556 B = 5176.273059 C = 5893.127329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.613 5.613 3 C -0.261 4.261 4 H 0.051 0.949 5 C -0.048 4.048 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.278 1.278 9 H -0.287 1.287 10 H -0.280 1.280 11 C 0.153 3.847 12 C 0.123 3.877 13 H 0.031 0.969 14 C -0.111 4.111 15 C -0.121 4.121 16 C 0.098 3.902 17 N -0.613 5.613 18 C 0.518 3.482 19 O -0.593 6.593 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.131 4.131 24 H -0.001 1.001 25 H 0.019 0.981 26 H 0.038 0.962 27 H 0.250 0.750 28 H 0.046 0.954 29 H 0.018 0.982 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -20.925 -9.903 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.337 5.337 3 C -0.391 4.391 4 H 0.069 0.931 5 C -0.243 4.243 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.204 1.204 9 H -0.213 1.213 10 H -0.206 1.206 11 C 0.026 3.974 12 C 0.017 3.983 13 H 0.049 0.951 14 C -0.150 4.150 15 C -0.159 4.159 16 C -0.023 4.023 17 N -0.346 5.346 18 C 0.308 3.692 19 O -0.474 6.474 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.169 4.169 24 H 0.017 0.983 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.673 -20.352 -9.432 23.138 hybrid contribution 0.305 1.879 0.470 1.961 sum 5.978 -18.474 -8.962 21.385 Atomic orbital electron populations 1.20606 0.81919 0.96225 0.97459 1.43983 1.02307 1.00922 1.86482 1.19314 0.98537 0.87497 1.33745 0.93148 1.25788 0.98286 1.01799 0.98380 1.70212 1.17845 1.27966 1.42362 0.85265 0.77956 0.79863 0.77348 1.20387 1.21320 1.20566 1.20996 0.94518 0.87285 0.94622 1.22097 0.92229 0.86222 0.97783 0.95055 1.22522 0.95158 0.99478 0.97803 1.22824 1.00288 0.95786 0.97004 1.22624 0.95547 0.90237 0.93926 1.48814 1.18665 1.14228 1.52927 1.21195 0.80227 0.89803 0.77939 1.90710 1.69957 1.45608 1.41113 1.22927 0.96923 0.91719 1.03235 1.22797 0.98269 0.96290 0.98123 1.22809 0.94894 0.95301 1.03128 1.22836 0.95758 0.98291 1.00062 0.98269 0.96186 0.94407 0.94074 0.93558 0.96392 0.90678 0.91563 0.86831 0.90396 0.87571 0.89913 0.84067 0.92054 0.87677 0.87084 0.90864 0.90162 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 8.56 127.77 1.09 10.45 16 2 N -0.61 -33.54 2.78 -726.96 -2.02 -35.56 16 3 C -0.26 -15.85 9.66 84.03 0.81 -15.04 16 4 H 0.05 3.17 7.84 -2.91 -0.02 3.14 16 5 C -0.05 -2.86 5.21 84.86 0.44 -2.42 16 6 N -0.94 -58.04 10.50 21.65 0.23 -57.82 16 7 Si 0.97 48.52 29.56 68.60 2.03 50.55 16 8 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 11 C 0.15 7.27 5.07 86.38 0.44 7.70 16 12 C 0.12 4.75 3.12 45.34 0.14 4.89 16 13 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 14 C -0.11 -3.31 5.74 31.78 0.18 -3.13 16 15 C -0.12 -2.25 7.09 31.99 0.23 -2.02 16 16 C 0.10 1.81 6.74 86.86 0.59 2.39 16 17 N -0.61 -18.86 3.06 -788.03 -2.41 -21.27 16 18 C 0.52 17.42 7.19 87.66 0.63 18.05 16 19 O -0.59 -27.29 14.70 -3.04 -0.04 -27.34 16 20 C -0.13 -2.70 3.24 -11.01 -0.04 -2.74 16 21 C -0.12 -1.96 7.63 31.12 0.24 -1.72 16 22 C -0.12 -1.79 8.08 31.12 0.25 -1.54 16 23 C -0.13 -2.87 7.41 31.12 0.23 -2.64 16 24 H 0.00 -0.06 7.33 -2.39 -0.02 -0.07 16 25 H 0.02 1.08 7.29 -2.38 -0.02 1.06 16 26 H 0.04 1.59 6.21 -2.39 -0.01 1.57 16 27 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 28 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 29 H 0.02 0.98 6.53 -2.39 -0.02 0.97 16 30 H 0.07 2.23 6.20 -2.39 -0.01 2.22 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.25 7.22 -2.39 -0.02 1.24 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.14 2.05 7.57 -2.38 -0.02 2.03 16 37 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.74 7.43 -2.39 -0.02 1.72 16 Total: -1.00 -78.95 327.92 3.99 -74.95 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 0.98 Total: 4.23 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 5.24 Total: 12.25 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.21 Total: -114.65 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.04 Total: -27.34 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -78.95 3.99 -74.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281918560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.863 kcal (2) G-P(sol) polarization free energy of solvation -78.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds