Wall clock time and date at job start Mon Mar 30 2020 01:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.46841 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47056 * 180.02562 * 6 5 3 8 8 C 1.52999 * 117.49529 * 243.74872 * 7 6 5 9 9 C 1.52994 * 117.50053 * 175.09083 * 7 6 5 10 10 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 11 11 C 1.53782 * 113.61652 * 60.00231 * 10 2 1 12 12 C 1.53781 * 87.08260 * 220.01840 * 11 10 2 13 13 N 1.46497 * 113.61305 * 270.79919 * 12 11 10 14 14 C 1.36944 * 119.99791 * 203.46713 * 13 12 11 15 15 H 1.07993 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00274 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47017 * 89.99868 * 18 16 14 20 20 H 1.48492 * 109.47131 * 210.00443 * 18 16 14 21 21 H 1.48501 * 109.46802 * 330.00196 * 18 16 14 22 22 C 1.53786 * 87.17350 * 25.39213 * 12 11 10 23 23 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 24 24 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 25 25 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 26 26 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 27 27 H 1.09004 * 109.46970 * 60.00328 * 5 3 2 28 28 H 1.09001 * 109.47346 * 299.99838 * 6 5 3 29 29 H 1.08995 * 109.47242 * 60.00088 * 6 5 3 30 30 H 1.09003 * 115.55056 * 29.41176 * 7 6 5 31 31 H 1.09006 * 117.49980 * 359.97438 * 8 7 6 32 32 H 1.08998 * 117.50251 * 145.01956 * 8 7 6 33 33 H 1.09005 * 117.50066 * 214.97784 * 9 7 6 34 34 H 1.09008 * 117.50016 * 359.97438 * 9 7 6 35 35 H 1.08997 * 112.90648 * 191.25794 * 10 2 1 36 36 H 1.09001 * 113.61250 * 105.46657 * 11 10 2 37 37 H 1.08997 * 113.61225 * 334.56498 * 11 10 2 38 38 H 1.09002 * 113.61445 * 139.98212 * 12 11 10 39 39 H 0.96995 * 120.00146 * 23.47603 * 13 12 11 40 40 H 0.96996 * 120.00281 * 179.97438 * 17 16 14 41 41 H 1.08993 * 113.61491 * 89.15923 * 22 12 11 42 42 H 1.09000 * 113.61138 * 220.06261 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 6 1.6146 4.9602 -0.0011 8 6 1.7808 5.8719 -1.2184 9 6 2.4323 6.2481 0.1146 10 6 2.1975 -1.2687 0.0006 11 6 1.8955 -2.1550 -1.2193 12 6 1.9130 -3.3527 -0.2548 13 7 3.2394 -3.9515 -0.0869 14 6 3.3561 -5.2537 0.3206 15 1 2.4704 -5.8392 0.5178 16 6 4.6129 -5.8213 0.4792 17 7 5.6924 -5.1078 0.2383 18 14 4.7721 -7.5978 1.0345 19 1 4.7934 -8.4878 -0.1540 20 1 6.0326 -7.7656 1.8013 21 1 3.6167 -7.9520 1.8975 22 6 1.5384 -2.3625 0.8606 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 0.7591 2.5298 -0.8908 27 1 0.7583 2.5302 0.8892 28 1 3.0062 3.5779 0.8889 29 1 3.0062 3.5771 -0.8910 30 1 0.6377 4.9391 0.4822 31 1 2.4356 5.5279 -2.0192 32 1 0.9136 6.4510 -1.5358 33 1 1.9934 7.0745 0.6738 34 1 3.5154 6.1515 0.1911 35 1 3.2624 -1.1437 0.1965 36 1 2.6999 -2.1747 -1.9546 37 1 0.9184 -1.9671 -1.6643 38 1 1.1383 -4.0911 -0.4615 39 1 4.0349 -3.4257 -0.2643 40 1 6.5706 -5.5043 0.3495 41 1 0.4636 -2.2314 0.9853 42 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284751081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:34 Heat of formation + Delta-G solvation = -5.577048 kcal Electronic energy + Delta-G solvation = -20013.592826 eV Core-core repulsion = 16994.365969 eV Total energy + Delta-G solvation = -3019.226857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34616 -39.58551 -38.29224 -36.19843 -34.82966 -33.07434 -31.68985 -27.93534 -26.99856 -26.48366 -25.73011 -23.84820 -23.19367 -21.32967 -20.50020 -19.66518 -19.30228 -18.05386 -17.28728 -16.96151 -16.69560 -16.26132 -15.80963 -15.42114 -15.17800 -14.86403 -14.47430 -14.22514 -13.87459 -13.45837 -13.34743 -13.24826 -13.19954 -12.83092 -12.74583 -12.49361 -12.43203 -12.23974 -12.16893 -12.11689 -11.82640 -11.66644 -11.23252 -11.17946 -10.92958 -10.78222 -10.63158 -9.53292 -9.05943 -7.96747 -5.27518 1.46282 1.48975 1.57399 1.65736 2.08659 2.54331 2.93087 3.35023 3.52173 3.67806 3.81361 3.85540 3.86349 4.05120 4.07428 4.25608 4.26130 4.32124 4.38594 4.42570 4.61205 4.68236 4.76270 4.80007 4.81370 4.82307 4.95971 5.05404 5.06992 5.08398 5.12242 5.16735 5.23225 5.29578 5.33412 5.45800 5.51511 5.73319 6.25014 6.51617 7.24189 7.29138 8.05023 8.26977 9.26988 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039841 B = 0.003208 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.618902 B = 8726.017312 C = 9168.165639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.494 3.506 4 O -0.602 6.602 5 C -0.120 4.120 6 C -0.074 4.074 7 C -0.151 4.151 8 C -0.179 4.179 9 C -0.190 4.190 10 C 0.126 3.874 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.726 5.726 14 C -0.243 4.243 15 H 0.085 0.915 16 C -0.081 4.081 17 N -0.974 5.974 18 Si 0.979 3.021 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.265 1.265 22 C -0.160 4.160 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.369 0.631 40 H 0.251 0.749 41 H 0.115 0.885 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 19.712 -1.418 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.334 5.334 3 C 0.285 3.715 4 O -0.483 6.483 5 C -0.159 4.159 6 C -0.112 4.112 7 C -0.169 4.169 8 C -0.216 4.216 9 C -0.227 4.227 10 C 0.021 3.979 11 C -0.187 4.187 12 C 0.042 3.958 13 N -0.363 5.363 14 C -0.374 4.374 15 H 0.103 0.897 16 C -0.273 4.273 17 N -0.625 5.625 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.226 1.226 21 H -0.189 1.189 22 C -0.201 4.201 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.201 0.799 40 H 0.059 0.941 41 H 0.133 0.867 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.344 19.514 -1.361 26.143 hybrid contribution 1.439 -0.889 0.274 1.713 sum -15.905 18.625 -1.087 24.516 Atomic orbital electron populations 1.22144 0.76643 1.05257 1.03516 1.48070 1.08649 1.04698 1.71956 1.21741 0.87820 0.87196 0.74774 1.90697 1.17029 1.88303 1.52276 1.21696 0.98933 0.88577 1.06693 1.20863 0.96746 0.92093 1.01537 1.22330 1.01188 0.90031 1.03347 1.23125 1.03556 1.03548 0.91401 1.23053 0.99307 0.99007 1.01293 1.22272 0.95801 0.81942 0.97836 1.23806 1.02706 0.95700 0.96510 1.21244 0.87621 0.92576 0.94365 1.42442 1.02723 1.11075 1.80065 1.19733 0.92657 0.89036 1.35978 0.89734 1.25695 0.95253 1.02783 1.03580 1.69860 0.97376 1.37884 1.57353 0.85058 0.76944 0.79536 0.77724 1.21205 1.22570 1.18930 1.24126 1.01450 0.96162 0.98380 0.91022 0.87970 0.89634 0.85985 0.86118 0.93112 0.93284 0.85543 0.89607 0.87199 0.87419 0.89914 0.91648 0.93573 0.86264 0.90276 0.79912 0.94065 0.86664 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 8.85 127.77 1.13 2.05 16 2 N -0.60 -15.78 3.08 -819.29 -2.53 -18.31 16 3 C 0.49 14.37 7.67 87.66 0.67 15.04 16 4 O -0.60 -24.72 15.47 -3.03 -0.05 -24.77 16 5 C -0.12 -2.05 4.21 29.85 0.13 -1.93 16 6 C -0.07 -1.51 4.78 30.60 0.15 -1.36 16 7 C -0.15 -2.14 5.73 -10.79 -0.06 -2.21 16 8 C -0.18 -2.40 10.18 30.62 0.31 -2.09 16 9 C -0.19 -2.73 10.25 30.61 0.31 -2.42 16 10 C 0.13 4.37 4.09 45.58 0.19 4.56 16 11 C -0.15 -4.86 7.36 31.12 0.23 -4.63 16 12 C 0.15 5.93 4.55 45.52 0.21 6.14 16 13 N -0.73 -37.94 5.31 -320.44 -1.70 -39.64 16 14 C -0.24 -13.66 9.97 84.03 0.84 -12.82 16 15 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 16 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 17 N -0.97 -62.20 13.06 21.65 0.28 -61.91 16 18 Si 0.98 46.89 29.55 68.60 2.03 48.91 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.16 -5.34 7.32 31.18 0.23 -5.11 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 0.80 6.44 -2.39 -0.02 0.78 16 25 H 0.09 1.08 6.35 -2.38 -0.02 1.06 16 26 H 0.12 1.40 7.40 -2.39 -0.02 1.38 16 27 H 0.12 1.41 8.11 -2.38 -0.02 1.39 16 28 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.05 1.20 7.83 -2.39 -0.02 1.18 16 30 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.09 1.30 8.03 -2.38 -0.02 1.28 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.36 16 35 H 0.07 2.98 7.24 -2.39 -0.02 2.96 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 2.91 6.92 -2.39 -0.02 2.89 16 38 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 39 H 0.37 21.47 7.90 -92.71 -0.73 20.73 16 40 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.12 2.83 6.74 -2.39 -0.02 2.81 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.72 340.50 3.09 -73.63 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.26 Total: 31.18 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.79 Total: -9.09 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -3.95 Total: -119.86 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -76.72 3.09 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284751081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.049 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds