Wall clock time and date at job start Mon Mar 30 2020 00:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46862 * 2 1 4 4 C 1.47964 * 111.00117 * 70.63865 * 3 2 1 5 5 C 1.53930 * 86.18266 * 137.58352 * 4 3 2 6 6 C 1.47959 * 111.00086 * 169.99471 * 3 2 1 7 7 H 1.08997 * 113.86141 * 336.74750 * 6 3 2 8 8 C 1.50703 * 113.75480 * 108.09947 * 6 3 2 9 9 O 1.21286 * 120.00421 * 356.06318 * 8 6 3 10 10 N 1.34774 * 119.99822 * 176.06755 * 8 6 3 11 11 C 1.37102 * 120.00047 * 359.97438 * 10 8 6 12 12 H 1.08002 * 120.00183 * 234.88077 * 11 10 8 13 13 C 1.38944 * 119.99996 * 54.88001 * 11 10 8 14 14 N 1.31409 * 120.00169 * 21.20397 * 13 11 10 15 15 Si 1.86807 * 120.00004 * 201.20700 * 13 11 10 16 16 H 1.48496 * 109.46937 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46994 * 120.00033 * 15 13 11 18 18 H 1.48502 * 109.46896 * 239.99749 * 15 13 11 19 19 C 1.46501 * 120.00407 * 180.02562 * 10 8 6 20 20 C 1.54263 * 110.03612 * 117.47739 * 19 10 8 21 21 C 1.54967 * 104.15734 * 95.75590 * 20 19 10 22 22 C 1.54886 * 102.77613 * 37.89129 * 21 20 19 23 23 C 1.53881 * 110.03368 * 234.70106 * 19 10 8 24 24 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47606 * 299.99908 * 1 2 3 26 26 H 1.09000 * 109.47083 * 60.00431 * 1 2 3 27 27 H 1.08997 * 109.47606 * 240.00092 * 2 1 3 28 28 H 1.09000 * 109.47083 * 119.99569 * 2 1 3 29 29 H 1.09004 * 113.75838 * 23.26307 * 4 3 2 30 30 H 1.09001 * 113.75766 * 251.89990 * 4 3 2 31 31 H 1.08998 * 113.73247 * 221.92288 * 5 4 3 32 32 H 1.09005 * 113.73772 * 90.63644 * 5 4 3 33 33 H 0.97007 * 120.00262 * 174.91372 * 14 13 11 34 34 H 1.09002 * 110.01383 * 356.08576 * 19 10 8 35 35 H 1.09003 * 110.48703 * 214.40611 * 20 19 10 36 36 H 1.09001 * 110.48726 * 337.05070 * 20 19 10 37 37 H 1.08994 * 110.72289 * 279.57496 * 21 20 19 38 38 H 1.09002 * 110.92013 * 156.29524 * 21 20 19 39 39 H 1.09007 * 110.48409 * 203.40225 * 22 21 20 40 40 H 1.09000 * 110.48760 * 80.76162 * 22 21 20 41 41 H 1.09004 * 110.02831 * 359.94418 * 23 19 10 42 42 H 1.08994 * 110.03093 * 121.37672 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7646 2.0376 1.3032 5 6 3.1836 2.6198 1.1730 6 6 3.4789 1.4316 0.2400 7 1 3.8690 0.5544 0.7561 8 6 4.2831 1.8024 -0.9794 9 8 3.7289 1.9593 -2.0468 10 7 5.6182 1.9595 -0.8838 11 6 6.2447 1.7825 0.3228 12 1 6.8663 2.5669 0.7287 13 6 6.0799 0.5940 1.0234 14 7 5.6963 -0.4930 0.3924 15 14 6.4034 0.5413 2.8625 16 1 6.8215 1.8872 3.3302 17 1 5.1642 0.1331 3.5716 18 1 7.4823 -0.4385 3.1474 19 6 6.4001 2.3205 -2.0690 20 6 7.0751 3.6916 -1.8594 21 6 8.5001 3.3405 -1.3618 22 6 8.8561 2.0871 -2.1992 23 6 7.5319 1.3004 -2.2846 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6515 1.3370 2.1306 30 1 0.9765 2.7900 1.2708 31 1 3.7529 2.5999 2.1023 32 1 3.2164 3.5883 0.6739 33 1 5.6524 -1.3386 0.8656 34 1 5.7542 2.3525 -2.9465 35 1 7.1240 4.2405 -2.7999 36 1 6.5390 4.2697 -1.1066 37 1 8.4897 3.1041 -0.2979 38 1 9.1959 4.1537 -1.5686 39 1 9.6196 1.4952 -1.6942 40 1 9.1929 2.3764 -3.1947 41 1 7.5000 0.5374 -1.5069 42 1 7.4352 0.8376 -3.2667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293696143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:32 Heat of formation + Delta-G solvation = -2.058515 kcal Electronic energy + Delta-G solvation = -22122.010800 eV Core-core repulsion = 19102.936519 eV Total energy + Delta-G solvation = -3019.074281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75799 -38.22267 -36.12746 -33.97388 -32.09143 -31.35744 -27.87415 -27.50518 -26.65881 -25.70694 -24.41023 -21.59814 -20.61445 -19.83486 -19.17659 -18.64888 -16.84273 -15.76641 -15.35533 -15.27016 -14.56612 -14.53804 -14.15837 -14.03311 -13.26389 -13.10178 -12.93960 -12.52835 -12.12559 -12.01663 -11.67591 -11.44614 -11.18496 -10.93508 -10.88470 -10.73555 -10.65687 -10.53272 -10.42243 -10.37914 -10.28974 -10.27991 -9.95788 -9.86383 -9.64525 -8.86143 -8.44907 -7.72320 -7.18491 -6.42033 -4.20886 3.03527 3.16215 3.18813 3.96401 4.16002 4.44787 4.83923 5.06039 5.29087 5.40589 5.43072 5.48480 5.59754 5.63696 5.68098 5.79626 5.97745 6.12876 6.15293 6.20551 6.27717 6.33362 6.38449 6.41265 6.44527 6.48967 6.50145 6.51931 6.58415 6.63763 6.67699 6.80728 6.88585 6.95477 7.07750 7.18994 7.41352 7.46986 7.77577 8.08846 8.67162 8.94752 9.69589 10.11824 10.61777 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.008517 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.405270 B = 3286.635351 C = 4050.751957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.022 3.978 3 N -0.462 5.462 4 C -0.004 4.004 5 C -0.122 4.122 6 C 0.035 3.965 7 H 0.121 0.879 8 C 0.531 3.469 9 O -0.593 6.593 10 N -0.449 5.449 11 C -0.326 4.326 12 H 0.082 0.918 13 C 0.051 3.949 14 N -0.858 5.858 15 Si 0.893 3.107 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.135 3.865 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.124 4.124 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 2.630 2.689 3.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 N -0.185 5.185 4 C -0.133 4.133 5 C -0.160 4.160 6 C -0.076 4.076 7 H 0.138 0.862 8 C 0.320 3.680 9 O -0.476 6.476 10 N -0.170 5.170 11 C -0.454 4.454 12 H 0.100 0.900 13 C -0.155 4.155 14 N -0.494 5.494 15 Si 0.719 3.281 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.206 1.206 19 C 0.030 3.970 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.227 2.770 1.571 3.413 hybrid contribution 0.627 -0.904 1.725 2.046 sum -0.600 1.866 3.297 3.836 Atomic orbital electron populations 1.21697 0.95518 1.00787 1.01933 1.22488 0.95447 0.91715 1.01015 1.68383 1.07410 1.14279 1.28461 1.23850 0.98340 0.98846 0.92309 1.23099 0.94765 0.98711 0.99445 1.23556 0.88178 1.00381 0.95483 0.86189 1.19833 0.82260 0.77446 0.88452 1.90495 1.71268 1.55595 1.30258 1.43339 1.03532 1.62934 1.07234 1.19141 1.31694 1.00265 0.94299 0.90033 1.25564 0.95620 0.94922 0.99391 1.69994 1.44505 0.98694 1.36173 0.86402 0.78438 0.79008 0.84290 1.18764 1.20341 1.20615 1.21504 0.92573 0.92473 0.90413 1.22613 0.96202 0.97638 0.99874 1.22485 0.95786 0.96407 1.00828 1.22251 0.97760 0.96896 0.98518 1.22399 0.93185 0.99304 1.01355 0.92946 0.93255 0.92085 0.90728 0.94956 0.92157 0.90078 0.91125 0.89789 0.92058 0.90708 0.92698 0.91735 0.90603 0.93375 0.92621 0.93181 0.88700 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.98 37.16 0.37 -1.78 16 2 C 0.02 0.42 5.54 -3.82 -0.02 0.40 16 3 N -0.46 -9.73 5.72 -232.06 -1.33 -11.06 16 4 C 0.00 -0.08 7.10 -2.77 -0.02 -0.10 16 5 C -0.12 -2.38 7.66 -25.80 -0.20 -2.58 16 6 C 0.04 0.81 2.32 -67.81 -0.16 0.65 16 7 H 0.12 2.92 4.64 -51.93 -0.24 2.68 16 8 C 0.53 13.74 6.76 -10.99 -0.07 13.67 16 9 O -0.59 -16.94 16.03 5.55 0.09 -16.86 16 10 N -0.45 -10.91 2.29 -106.54 -0.24 -11.15 16 11 C -0.33 -7.71 6.46 -14.93 -0.10 -7.80 16 12 H 0.08 1.91 6.50 -52.49 -0.34 1.56 16 13 C 0.05 1.21 3.40 -17.47 -0.06 1.15 16 14 N -0.86 -21.61 11.80 55.50 0.65 -20.95 16 15 Si 0.89 18.43 29.61 -169.99 -5.03 13.39 16 16 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C 0.13 2.98 3.34 -66.81 -0.22 2.76 16 20 C -0.12 -2.34 6.13 -25.03 -0.15 -2.49 16 21 C -0.12 -2.00 6.54 -24.70 -0.16 -2.17 16 22 C -0.12 -1.99 6.83 -25.08 -0.17 -2.16 16 23 C -0.12 -2.56 6.25 -25.61 -0.16 -2.72 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.03 0.61 7.69 -51.93 -0.40 0.21 16 29 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 33 H 0.27 6.47 8.32 -40.82 -0.34 6.14 16 34 H 0.07 1.79 6.95 -51.93 -0.36 1.43 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 37 H 0.08 1.39 6.53 -51.93 -0.34 1.05 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 2.26 7.17 -51.93 -0.37 1.89 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -27.85 325.77 -9.13 -36.97 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.05 Total: 7.92 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.12 Total: -3.18 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.92 Total: -43.16 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.09 Total: -16.86 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.85 -9.13 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293696143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.913 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds