Wall clock time and date at job start Mon Mar 30 2020 00:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46862 * 2 1 4 4 C 1.47964 * 111.00117 * 70.63865 * 3 2 1 5 5 C 1.53930 * 86.18266 * 137.58352 * 4 3 2 6 6 C 1.47959 * 111.00086 * 169.99471 * 3 2 1 7 7 H 1.08997 * 113.86141 * 336.74750 * 6 3 2 8 8 C 1.50703 * 113.75480 * 108.09947 * 6 3 2 9 9 O 1.21286 * 120.00421 * 356.06318 * 8 6 3 10 10 N 1.34774 * 119.99822 * 176.06755 * 8 6 3 11 11 C 1.37102 * 120.00047 * 359.97438 * 10 8 6 12 12 H 1.08002 * 120.00183 * 234.88077 * 11 10 8 13 13 C 1.38944 * 119.99996 * 54.88001 * 11 10 8 14 14 N 1.31409 * 120.00169 * 21.20397 * 13 11 10 15 15 Si 1.86807 * 120.00004 * 201.20700 * 13 11 10 16 16 H 1.48496 * 109.46937 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46994 * 120.00033 * 15 13 11 18 18 H 1.48502 * 109.46896 * 239.99749 * 15 13 11 19 19 C 1.46501 * 120.00407 * 180.02562 * 10 8 6 20 20 C 1.54263 * 110.03612 * 117.47739 * 19 10 8 21 21 C 1.54967 * 104.15734 * 95.75590 * 20 19 10 22 22 C 1.54886 * 102.77613 * 37.89129 * 21 20 19 23 23 C 1.53881 * 110.03368 * 234.70106 * 19 10 8 24 24 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47606 * 299.99908 * 1 2 3 26 26 H 1.09000 * 109.47083 * 60.00431 * 1 2 3 27 27 H 1.08997 * 109.47606 * 240.00092 * 2 1 3 28 28 H 1.09000 * 109.47083 * 119.99569 * 2 1 3 29 29 H 1.09004 * 113.75838 * 23.26307 * 4 3 2 30 30 H 1.09001 * 113.75766 * 251.89990 * 4 3 2 31 31 H 1.08998 * 113.73247 * 221.92288 * 5 4 3 32 32 H 1.09005 * 113.73772 * 90.63644 * 5 4 3 33 33 H 0.97007 * 120.00262 * 174.91372 * 14 13 11 34 34 H 1.09002 * 110.01383 * 356.08576 * 19 10 8 35 35 H 1.09003 * 110.48703 * 214.40611 * 20 19 10 36 36 H 1.09001 * 110.48726 * 337.05070 * 20 19 10 37 37 H 1.08994 * 110.72289 * 279.57496 * 21 20 19 38 38 H 1.09002 * 110.92013 * 156.29524 * 21 20 19 39 39 H 1.09007 * 110.48409 * 203.40225 * 22 21 20 40 40 H 1.09000 * 110.48760 * 80.76162 * 22 21 20 41 41 H 1.09004 * 110.02831 * 359.94418 * 23 19 10 42 42 H 1.08994 * 110.03093 * 121.37672 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7646 2.0376 1.3032 5 6 3.1836 2.6198 1.1730 6 6 3.4789 1.4316 0.2400 7 1 3.8690 0.5544 0.7561 8 6 4.2831 1.8024 -0.9794 9 8 3.7289 1.9593 -2.0468 10 7 5.6182 1.9595 -0.8838 11 6 6.2447 1.7825 0.3228 12 1 6.8663 2.5669 0.7287 13 6 6.0799 0.5940 1.0234 14 7 5.6963 -0.4930 0.3924 15 14 6.4034 0.5413 2.8625 16 1 6.8215 1.8872 3.3302 17 1 5.1642 0.1331 3.5716 18 1 7.4823 -0.4385 3.1474 19 6 6.4001 2.3205 -2.0690 20 6 7.0751 3.6916 -1.8594 21 6 8.5001 3.3405 -1.3618 22 6 8.8561 2.0871 -2.1992 23 6 7.5319 1.3004 -2.2846 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6515 1.3370 2.1306 30 1 0.9765 2.7900 1.2708 31 1 3.7529 2.5999 2.1023 32 1 3.2164 3.5883 0.6739 33 1 5.6524 -1.3386 0.8656 34 1 5.7542 2.3525 -2.9465 35 1 7.1240 4.2405 -2.7999 36 1 6.5390 4.2697 -1.1066 37 1 8.4897 3.1041 -0.2979 38 1 9.1959 4.1537 -1.5686 39 1 9.6196 1.4952 -1.6942 40 1 9.1929 2.3764 -3.1947 41 1 7.5000 0.5374 -1.5069 42 1 7.4352 0.8376 -3.2667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293696143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:31 Heat of formation + Delta-G solvation = -19.172912 kcal Electronic energy + Delta-G solvation = -22122.752936 eV Core-core repulsion = 19102.936519 eV Total energy + Delta-G solvation = -3019.816417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46844 -39.89420 -37.92807 -35.82460 -33.53066 -33.21728 -29.43372 -29.15967 -28.11885 -27.42389 -26.19269 -23.09714 -22.25871 -21.29677 -20.97513 -20.31604 -18.65770 -17.48470 -17.17583 -16.85556 -16.30399 -16.08795 -15.79333 -15.57829 -15.02547 -14.65043 -14.52010 -14.16992 -13.76998 -13.50725 -13.31100 -12.91047 -12.84438 -12.59604 -12.46874 -12.37047 -12.25353 -12.13865 -12.03944 -11.83039 -11.81192 -11.79184 -11.51668 -11.44959 -11.27356 -10.67870 -10.28142 -9.44568 -9.08620 -8.26788 -6.11868 1.39079 1.47316 1.57486 2.13947 2.35075 2.79242 3.01099 3.38248 3.72586 3.88793 3.92987 3.98782 4.14041 4.21249 4.23503 4.43924 4.53440 4.62162 4.65097 4.71545 4.72949 4.81795 4.84889 4.91459 4.93169 4.95666 4.96216 5.05988 5.08884 5.17315 5.20659 5.26863 5.32369 5.41337 5.50333 5.54649 5.63952 5.73897 6.19290 6.25771 6.76406 7.08539 7.76079 8.20959 8.78059 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.008517 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.405270 B = 3286.635351 C = 4050.751957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.022 3.978 3 N -0.487 5.487 4 C 0.011 3.989 5 C -0.116 4.116 6 C 0.028 3.972 7 H 0.105 0.895 8 C 0.510 3.490 9 O -0.637 6.637 10 N -0.449 5.449 11 C -0.330 4.330 12 H 0.088 0.912 13 C 0.022 3.978 14 N -0.889 5.889 15 Si 0.950 3.050 16 H -0.251 1.251 17 H -0.274 1.274 18 H -0.283 1.283 19 C 0.120 3.880 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.120 4.120 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.269 0.731 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 3.689 4.431 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.106 4.106 3 N -0.211 5.211 4 C -0.117 4.117 5 C -0.155 4.155 6 C -0.084 4.084 7 H 0.123 0.877 8 C 0.300 3.700 9 O -0.524 6.524 10 N -0.169 5.169 11 C -0.458 4.458 12 H 0.105 0.895 13 C -0.181 4.181 14 N -0.526 5.526 15 Si 0.774 3.226 16 H -0.174 1.174 17 H -0.199 1.199 18 H -0.209 1.209 19 C 0.016 3.984 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.159 4.159 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.745 3.845 3.328 5.139 hybrid contribution 0.507 -1.272 1.102 1.758 sum -0.238 2.572 4.430 5.128 Atomic orbital electron populations 1.21625 0.92225 1.02456 1.02474 1.22491 0.98104 0.90650 0.99398 1.68370 1.06209 1.15516 1.30966 1.23913 0.97697 0.98955 0.91120 1.23083 0.96389 0.97142 0.98860 1.23445 0.89009 1.01190 0.94728 0.87741 1.20533 0.82973 0.77473 0.89017 1.90440 1.72109 1.57933 1.31917 1.43541 1.03478 1.61747 1.08089 1.19303 1.31671 1.00554 0.94262 0.89491 1.26173 0.94987 0.94207 1.02770 1.70106 1.45431 0.99276 1.37803 0.85525 0.78194 0.79363 0.79554 1.17400 1.19917 1.20943 1.21750 0.92561 0.95205 0.88916 1.22547 0.96892 0.95340 1.00744 1.22430 0.95043 0.97370 0.99786 1.22218 0.95590 0.96379 1.00234 1.22303 0.95082 0.98527 0.99974 0.90782 0.91320 0.92797 0.94120 0.94864 0.90232 0.87557 0.89919 0.90374 0.92123 0.93620 0.90605 0.92836 0.92031 0.89836 0.91687 0.90556 0.92213 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.98 71.98 0.72 -3.03 16 2 C 0.02 0.86 5.54 86.30 0.48 1.34 16 3 N -0.49 -20.53 5.72 -888.11 -5.08 -25.61 16 4 C 0.01 0.37 7.10 86.40 0.61 0.98 16 5 C -0.12 -4.44 7.66 31.24 0.24 -4.20 16 6 C 0.03 1.31 2.32 44.27 0.10 1.41 16 7 H 0.11 5.19 4.64 -2.39 -0.01 5.18 16 8 C 0.51 27.45 6.76 87.66 0.59 28.04 16 9 O -0.64 -38.36 16.03 -3.05 -0.05 -38.41 16 10 N -0.45 -22.47 2.29 -609.37 -1.40 -23.87 16 11 C -0.33 -15.73 6.46 84.04 0.54 -15.19 16 12 H 0.09 4.02 6.50 -2.91 -0.02 4.00 16 13 C 0.02 1.05 3.40 84.93 0.29 1.34 16 14 N -0.89 -45.95 11.80 21.66 0.26 -45.70 16 15 Si 0.95 37.05 29.61 68.60 2.03 39.08 16 16 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 17 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 19 C 0.12 5.44 3.34 45.72 0.15 5.59 16 20 C -0.12 -4.28 6.13 31.69 0.19 -4.09 16 21 C -0.11 -3.45 6.54 31.91 0.21 -3.24 16 22 C -0.11 -3.43 6.83 31.67 0.22 -3.21 16 23 C -0.12 -5.05 6.25 31.32 0.20 -4.85 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.71 7.54 -2.39 -0.02 1.69 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.03 1.24 7.69 -2.39 -0.02 1.22 16 29 H 0.08 2.32 7.78 -2.38 -0.02 2.30 16 30 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.08 2.89 8.14 -2.39 -0.02 2.88 16 32 H 0.08 3.04 8.09 -2.38 -0.02 3.02 16 33 H 0.27 13.26 8.32 -92.70 -0.77 12.49 16 34 H 0.05 2.30 6.95 -2.39 -0.02 2.29 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 37 H 0.06 2.13 6.53 -2.39 -0.02 2.12 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.93 7.17 -2.38 -0.02 2.91 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.06 325.77 1.29 -61.77 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.98 Total: 31.84 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.54 Total: 0.89 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -6.22 Total: -95.17 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.05 Total: -38.41 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -63.06 1.29 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293696143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.595 kcal (2) G-P(sol) polarization free energy of solvation -63.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds