Wall clock time and date at job start Mon Mar 30 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47428 * 2 1 4 4 C 1.47959 * 111.00629 * 205.52049 * 3 2 1 5 5 C 1.53935 * 86.18329 * 137.57916 * 4 3 2 6 6 C 1.47960 * 110.99986 * 304.88335 * 3 2 1 7 7 H 1.08999 * 113.86264 * 108.07846 * 6 3 2 8 8 C 1.50708 * 113.75682 * 336.72846 * 6 3 2 9 9 O 1.21294 * 119.99774 * 7.94467 * 8 6 3 10 10 N 1.34777 * 119.99998 * 187.94175 * 8 6 3 11 11 C 1.37099 * 119.99703 * 359.97438 * 10 8 6 12 12 H 1.08002 * 119.99564 * 120.96511 * 11 10 8 13 13 C 1.38949 * 120.00678 * 301.23991 * 11 10 8 14 14 N 1.31418 * 119.99699 * 351.42077 * 13 11 10 15 15 Si 1.86802 * 120.00382 * 171.41981 * 13 11 10 16 16 H 1.48493 * 109.47031 * 89.99860 * 15 13 11 17 17 H 1.48504 * 109.47012 * 210.00336 * 15 13 11 18 18 H 1.48501 * 109.46616 * 329.99921 * 15 13 11 19 19 C 1.46493 * 120.00067 * 180.02562 * 10 8 6 20 20 C 1.54261 * 110.03359 * 233.18633 * 19 10 8 21 21 C 1.54960 * 104.16432 * 217.13622 * 20 19 10 22 22 C 1.54892 * 102.77430 * 37.88690 * 21 20 19 23 23 C 1.53881 * 110.03358 * 115.96870 * 19 10 8 24 24 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47034 * 299.99892 * 1 2 3 26 26 H 1.08993 * 109.47075 * 60.00300 * 1 2 3 27 27 H 1.08999 * 109.47034 * 240.00107 * 2 1 3 28 28 H 1.09005 * 109.47375 * 120.00311 * 2 1 3 29 29 H 1.09003 * 113.75439 * 23.26445 * 4 3 2 30 30 H 1.08997 * 113.86042 * 251.91662 * 4 3 2 31 31 H 1.08997 * 113.73427 * 221.92003 * 5 4 3 32 32 H 1.09001 * 113.73201 * 90.63848 * 5 4 3 33 33 H 0.97001 * 119.99992 * 185.00738 * 14 13 11 34 34 H 1.08996 * 110.01791 * 354.58040 * 19 10 8 35 35 H 1.08998 * 110.48631 * 335.78377 * 20 19 10 36 36 H 1.09004 * 110.48915 * 98.42657 * 20 19 10 37 37 H 1.09004 * 110.72110 * 279.57799 * 21 20 19 38 38 H 1.08995 * 110.92745 * 156.29785 * 21 20 19 39 39 H 1.09006 * 110.48531 * 203.40978 * 22 21 20 40 40 H 1.08992 * 110.48769 * 80.76648 * 22 21 20 41 41 H 1.08999 * 110.03089 * 238.57330 * 23 19 10 42 42 H 1.08993 * 110.02939 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.3717 1.4694 -0.5951 5 6 2.8643 2.7326 -1.3138 6 6 1.4517 2.1482 -1.1331 7 1 0.7056 2.8859 -0.8379 8 6 1.0008 1.2836 -2.2823 9 8 0.9867 0.0765 -2.1639 10 7 0.6133 1.8517 -3.4414 11 6 0.6287 3.2161 -3.5749 12 1 1.2265 3.6763 -4.3477 13 6 -0.1202 4.0072 -2.7123 14 7 -0.9712 3.4490 -1.8809 15 14 0.0827 5.8640 -2.7345 16 1 -0.8720 6.4547 -3.7064 17 1 -0.1899 6.4079 -1.3798 18 1 1.4714 6.2054 -3.1347 19 6 0.1745 1.0113 -4.5582 20 6 0.9696 1.3671 -5.8314 21 6 -0.0688 1.2405 -6.9747 22 6 -1.3609 1.7973 -6.3269 23 6 -1.3068 1.2843 -4.8731 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.6071 0.6455 -1.2689 30 1 4.1614 1.6642 0.1305 31 1 3.1806 2.8021 -2.3545 32 1 3.0330 3.6530 -0.7548 33 1 -1.5461 4.0035 -1.3305 34 1 0.3160 -0.0409 -4.3115 35 1 1.3486 2.3873 -5.7719 36 1 1.7884 0.6629 -5.9791 37 1 -0.1998 0.1974 -7.2630 38 1 0.2232 1.8435 -7.8344 39 1 -2.2419 1.4070 -6.8366 40 1 -1.3588 2.8870 -6.3473 41 1 -1.8840 0.3644 -4.7799 42 1 -1.6990 2.0423 -4.1953 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293696145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:35 Heat of formation + Delta-G solvation = 28.856868 kcal Electronic energy + Delta-G solvation = -22643.131419 eV Core-core repulsion = 19625.397729 eV Total energy + Delta-G solvation = -3017.733690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35998 -38.05399 -35.98979 -34.39608 -31.77196 -31.09217 -27.97142 -27.54293 -26.14670 -25.59081 -24.52623 -21.17708 -20.95618 -20.15174 -19.24877 -18.59186 -16.45833 -15.84689 -15.43453 -15.20543 -14.76140 -14.52023 -14.10607 -13.93803 -13.49117 -12.97251 -12.84332 -12.61569 -12.01542 -11.59634 -11.55586 -11.46082 -11.12179 -10.96067 -10.71570 -10.63640 -10.51812 -10.46534 -10.36637 -10.29211 -10.11433 -9.91251 -9.88172 -9.63298 -9.49905 -8.90053 -8.73409 -7.29888 -7.04217 -6.43968 -4.34068 3.09397 3.19652 3.20636 3.91491 4.10638 4.68368 4.85186 4.88924 5.31239 5.34949 5.47452 5.55424 5.70240 6.04559 6.07648 6.11072 6.17295 6.19510 6.22070 6.28067 6.29974 6.33760 6.41203 6.49479 6.52047 6.58294 6.63828 6.72334 6.76263 6.86705 6.94604 7.02493 7.04577 7.14298 7.30006 7.33631 7.44152 7.50301 7.94193 8.05687 8.61263 8.89926 9.52942 9.98361 10.61562 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.010397 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.937294 B = 2692.511184 C = 3618.174003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 N -0.476 5.476 4 C -0.007 4.007 5 C -0.125 4.125 6 C 0.035 3.965 7 H 0.143 0.857 8 C 0.516 3.484 9 O -0.599 6.599 10 N -0.441 5.441 11 C -0.330 4.330 12 H 0.080 0.920 13 C 0.053 3.947 14 N -0.860 5.860 15 Si 0.906 3.094 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.134 3.866 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.125 4.125 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.273 0.727 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -0.481 -3.783 4.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 N -0.198 5.198 4 C -0.136 4.136 5 C -0.164 4.164 6 C -0.077 4.077 7 H 0.160 0.840 8 C 0.307 3.693 9 O -0.487 6.487 10 N -0.161 5.161 11 C -0.458 4.458 12 H 0.098 0.902 13 C -0.153 4.153 14 N -0.496 5.496 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.205 1.205 18 H -0.191 1.191 19 C 0.030 3.970 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.164 4.164 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.594 -0.821 -2.859 3.946 hybrid contribution -0.143 0.659 -0.671 0.951 sum 2.451 -0.162 -3.530 4.300 Atomic orbital electron populations 1.21928 0.95184 1.00088 1.01901 1.23022 0.96759 0.91242 1.00667 1.68822 1.02510 1.12742 1.35761 1.23960 0.94198 0.98047 0.97396 1.23133 0.95519 0.97121 1.00594 1.23372 0.98764 0.96464 0.89065 0.83980 1.20602 0.77266 0.86987 0.84485 1.90441 1.60191 1.15790 1.82239 1.43437 1.56778 1.05677 1.10180 1.19101 1.28383 0.80170 1.18190 0.90236 1.25609 0.94202 0.99752 0.95724 1.69816 1.20048 1.36356 1.23360 0.86251 0.79195 0.83423 0.77968 1.20257 1.20541 1.19085 1.21564 0.92697 0.95432 0.87299 1.22646 0.97221 1.02313 0.94436 1.22428 0.96167 0.99899 0.97374 1.22263 0.96395 1.00611 0.96137 1.22392 0.96809 1.00810 0.96364 0.94411 0.95214 0.89952 0.88582 0.94875 0.91955 0.90705 0.90950 0.90065 0.91657 0.90605 0.90272 0.93019 0.92450 0.92465 0.93126 0.91683 0.93604 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.73 37.16 0.32 -2.67 16 2 C 0.01 0.23 5.43 -3.83 -0.02 0.21 16 3 N -0.48 -10.24 6.38 -232.06 -1.48 -11.72 16 4 C -0.01 -0.13 7.72 -2.77 -0.02 -0.15 16 5 C -0.13 -2.47 7.48 -25.80 -0.19 -2.66 16 6 C 0.03 0.79 2.57 -67.80 -0.17 0.62 16 7 H 0.14 3.57 5.05 -51.93 -0.26 3.30 16 8 C 0.52 12.38 4.84 -10.98 -0.05 12.33 16 9 O -0.60 -14.99 9.77 5.55 0.05 -14.94 16 10 N -0.44 -10.22 2.29 -106.54 -0.24 -10.47 16 11 C -0.33 -7.64 6.80 -14.93 -0.10 -7.74 16 12 H 0.08 1.82 6.67 -52.49 -0.35 1.47 16 13 C 0.05 1.24 4.07 -17.47 -0.07 1.17 16 14 N -0.86 -21.29 11.05 55.50 0.61 -20.68 16 15 Si 0.91 18.50 29.56 -169.99 -5.03 13.48 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 C 0.13 2.82 3.28 -66.82 -0.22 2.60 16 20 C -0.13 -2.29 6.40 -25.04 -0.16 -2.45 16 21 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 22 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 23 C -0.13 -2.51 6.31 -25.61 -0.16 -2.67 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 2.10 4.79 -51.93 -0.25 1.85 16 27 H 0.10 2.23 4.74 -54.80 -0.26 1.97 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.20 7.54 -51.93 -0.39 0.81 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.42 7.97 -51.93 -0.41 1.01 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 34 H 0.08 1.70 6.96 -51.93 -0.36 1.34 16 35 H 0.08 1.49 6.20 -51.93 -0.32 1.17 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 2.10 7.51 -51.93 -0.39 1.71 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -25.28 313.08 -9.34 -34.63 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.79 Total: 10.53 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.19 Total: -5.54 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -1.11 Total: -42.87 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.05 Total: -14.94 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.28 -9.34 -34.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293696145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -25.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds