Wall clock time and date at job start Mon Mar 30 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47428 * 2 1 4 4 C 1.47959 * 111.00629 * 205.52049 * 3 2 1 5 5 C 1.53935 * 86.18329 * 137.57916 * 4 3 2 6 6 C 1.47960 * 110.99986 * 304.88335 * 3 2 1 7 7 H 1.08999 * 113.86264 * 108.07846 * 6 3 2 8 8 C 1.50708 * 113.75682 * 336.72846 * 6 3 2 9 9 O 1.21294 * 119.99774 * 7.94467 * 8 6 3 10 10 N 1.34777 * 119.99998 * 187.94175 * 8 6 3 11 11 C 1.37099 * 119.99703 * 359.97438 * 10 8 6 12 12 H 1.08002 * 119.99564 * 120.96511 * 11 10 8 13 13 C 1.38949 * 120.00678 * 301.23991 * 11 10 8 14 14 N 1.31418 * 119.99699 * 351.42077 * 13 11 10 15 15 Si 1.86802 * 120.00382 * 171.41981 * 13 11 10 16 16 H 1.48493 * 109.47031 * 89.99860 * 15 13 11 17 17 H 1.48504 * 109.47012 * 210.00336 * 15 13 11 18 18 H 1.48501 * 109.46616 * 329.99921 * 15 13 11 19 19 C 1.46493 * 120.00067 * 180.02562 * 10 8 6 20 20 C 1.54261 * 110.03359 * 233.18633 * 19 10 8 21 21 C 1.54960 * 104.16432 * 217.13622 * 20 19 10 22 22 C 1.54892 * 102.77430 * 37.88690 * 21 20 19 23 23 C 1.53881 * 110.03358 * 115.96870 * 19 10 8 24 24 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47034 * 299.99892 * 1 2 3 26 26 H 1.08993 * 109.47075 * 60.00300 * 1 2 3 27 27 H 1.08999 * 109.47034 * 240.00107 * 2 1 3 28 28 H 1.09005 * 109.47375 * 120.00311 * 2 1 3 29 29 H 1.09003 * 113.75439 * 23.26445 * 4 3 2 30 30 H 1.08997 * 113.86042 * 251.91662 * 4 3 2 31 31 H 1.08997 * 113.73427 * 221.92003 * 5 4 3 32 32 H 1.09001 * 113.73201 * 90.63848 * 5 4 3 33 33 H 0.97001 * 119.99992 * 185.00738 * 14 13 11 34 34 H 1.08996 * 110.01791 * 354.58040 * 19 10 8 35 35 H 1.08998 * 110.48631 * 335.78377 * 20 19 10 36 36 H 1.09004 * 110.48915 * 98.42657 * 20 19 10 37 37 H 1.09004 * 110.72110 * 279.57799 * 21 20 19 38 38 H 1.08995 * 110.92745 * 156.29785 * 21 20 19 39 39 H 1.09006 * 110.48531 * 203.40978 * 22 21 20 40 40 H 1.08992 * 110.48769 * 80.76648 * 22 21 20 41 41 H 1.08999 * 110.03089 * 238.57330 * 23 19 10 42 42 H 1.08993 * 110.02939 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.3717 1.4694 -0.5951 5 6 2.8643 2.7326 -1.3138 6 6 1.4517 2.1482 -1.1331 7 1 0.7056 2.8859 -0.8379 8 6 1.0008 1.2836 -2.2823 9 8 0.9867 0.0765 -2.1639 10 7 0.6133 1.8517 -3.4414 11 6 0.6287 3.2161 -3.5749 12 1 1.2265 3.6763 -4.3477 13 6 -0.1202 4.0072 -2.7123 14 7 -0.9712 3.4490 -1.8809 15 14 0.0827 5.8640 -2.7345 16 1 -0.8720 6.4547 -3.7064 17 1 -0.1899 6.4079 -1.3798 18 1 1.4714 6.2054 -3.1347 19 6 0.1745 1.0113 -4.5582 20 6 0.9696 1.3671 -5.8314 21 6 -0.0688 1.2405 -6.9747 22 6 -1.3609 1.7973 -6.3269 23 6 -1.3068 1.2843 -4.8731 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.6071 0.6455 -1.2689 30 1 4.1614 1.6642 0.1305 31 1 3.1806 2.8021 -2.3545 32 1 3.0330 3.6530 -0.7548 33 1 -1.5461 4.0035 -1.3305 34 1 0.3160 -0.0409 -4.3115 35 1 1.3486 2.3873 -5.7719 36 1 1.7884 0.6629 -5.9791 37 1 -0.1998 0.1974 -7.2630 38 1 0.2232 1.8435 -7.8344 39 1 -2.2419 1.4070 -6.8366 40 1 -1.3588 2.8870 -6.3473 41 1 -1.8840 0.3644 -4.7799 42 1 -1.6990 2.0423 -4.1953 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293696145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:34 Heat of formation + Delta-G solvation = 13.962353 kcal Electronic energy + Delta-G solvation = -22643.777293 eV Core-core repulsion = 19625.397729 eV Total energy + Delta-G solvation = -3018.379565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09017 -39.66531 -37.67962 -36.12491 -33.54529 -32.83805 -29.44856 -29.15649 -27.84441 -27.30286 -26.24736 -22.90179 -22.62895 -21.57735 -20.92994 -20.26031 -18.25380 -17.53358 -17.14642 -16.93013 -16.35282 -16.13299 -15.75516 -15.64476 -15.12810 -14.62627 -14.45350 -14.15513 -13.72816 -13.32326 -13.24613 -13.19264 -12.77279 -12.49548 -12.34255 -12.29089 -12.10712 -11.99351 -11.86063 -11.83762 -11.81429 -11.55833 -11.29309 -11.28935 -11.21177 -10.66045 -10.51255 -9.09609 -8.82553 -8.24261 -6.19298 1.45717 1.51866 1.59785 2.12759 2.37803 2.97436 3.08485 3.22643 3.81171 3.89041 3.95570 4.11291 4.18956 4.32404 4.44201 4.53574 4.57921 4.65649 4.69009 4.73111 4.79877 4.83709 4.87505 4.92342 5.01907 5.11180 5.11656 5.14143 5.18388 5.24825 5.30368 5.34274 5.47855 5.50437 5.56461 5.62664 5.64479 5.70269 6.23598 6.27346 6.79111 7.09134 7.70641 8.17458 8.81107 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.010397 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.937294 B = 2692.511184 C = 3618.174003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.017 3.983 3 N -0.484 5.484 4 C 0.004 3.996 5 C -0.117 4.117 6 C 0.028 3.972 7 H 0.119 0.881 8 C 0.505 3.495 9 O -0.619 6.619 10 N -0.447 5.447 11 C -0.332 4.332 12 H 0.085 0.915 13 C 0.023 3.977 14 N -0.888 5.888 15 Si 0.960 3.040 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.255 1.255 19 C 0.125 3.875 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.122 4.122 24 H 0.047 0.953 25 H 0.029 0.971 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.270 0.730 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 0.124 -4.814 6.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.110 4.110 3 N -0.207 5.207 4 C -0.125 4.125 5 C -0.156 4.156 6 C -0.084 4.084 7 H 0.136 0.864 8 C 0.296 3.704 9 O -0.508 6.508 10 N -0.166 5.166 11 C -0.460 4.460 12 H 0.102 0.898 13 C -0.181 4.181 14 N -0.524 5.524 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.178 1.178 19 C 0.021 3.979 20 C -0.160 4.160 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.161 4.161 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.728 -0.213 -3.916 5.411 hybrid contribution -0.533 0.413 -0.324 0.748 sum 3.195 0.200 -4.240 5.313 Atomic orbital electron populations 1.21794 0.96107 1.00163 1.00096 1.22891 0.95911 0.91465 1.00777 1.68813 1.03940 1.12390 1.35558 1.23967 0.93608 0.97184 0.97721 1.23136 0.93310 0.98191 1.00927 1.23249 0.99664 0.96419 0.89105 0.86381 1.20896 0.77404 0.86995 0.85093 1.90425 1.61165 1.16529 1.82710 1.43609 1.56309 1.06073 1.10563 1.19252 1.28315 0.80244 1.18177 0.89795 1.26180 0.93707 1.03006 0.95160 1.69944 1.20894 1.37491 1.24118 0.85411 0.79586 0.79162 0.77400 1.20174 1.21229 1.17820 1.21749 0.93995 0.94066 0.88125 1.22581 0.97839 1.01788 0.93781 1.22403 0.93982 1.01373 0.96890 1.22215 0.98419 1.00206 0.93840 1.22306 0.95931 0.99750 0.98109 0.93400 0.95163 0.93369 0.90136 0.92897 0.92501 0.87486 0.91161 0.88453 0.92076 0.92718 0.91218 0.92161 0.90818 0.89889 0.90720 0.92380 0.93563 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.73 71.98 0.63 -5.02 16 2 C 0.02 0.74 5.43 86.30 0.47 1.21 16 3 N -0.48 -20.51 6.38 -888.11 -5.67 -26.18 16 4 C 0.00 0.14 7.72 86.41 0.67 0.81 16 5 C -0.12 -4.48 7.48 31.24 0.23 -4.25 16 6 C 0.03 1.26 2.57 44.27 0.11 1.37 16 7 H 0.12 6.05 5.05 -2.39 -0.01 6.04 16 8 C 0.51 24.79 4.84 87.66 0.42 25.21 16 9 O -0.62 -31.88 9.77 -3.07 -0.03 -31.91 16 10 N -0.45 -21.09 2.29 -609.38 -1.40 -22.49 16 11 C -0.33 -15.41 6.80 84.04 0.57 -14.84 16 12 H 0.08 3.78 6.67 -2.91 -0.02 3.76 16 13 C 0.02 1.08 4.07 84.93 0.35 1.43 16 14 N -0.89 -45.23 11.05 21.66 0.24 -44.99 16 15 Si 0.96 37.64 29.56 68.60 2.03 39.67 16 16 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 17 H -0.29 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 19 C 0.12 5.30 3.28 45.72 0.15 5.45 16 20 C -0.12 -4.21 6.40 31.69 0.20 -4.00 16 21 C -0.11 -3.03 6.91 31.91 0.22 -2.81 16 22 C -0.11 -3.45 6.83 31.67 0.22 -3.23 16 23 C -0.12 -4.95 6.31 31.32 0.20 -4.75 16 24 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 26 H 0.05 2.54 4.79 -2.39 -0.01 2.52 16 27 H 0.08 3.75 4.74 -47.87 -0.23 3.53 16 28 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.06 2.12 7.54 -2.39 -0.02 2.10 16 30 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.07 2.69 7.97 -2.39 -0.02 2.67 16 32 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.27 13.33 8.32 -92.71 -0.77 12.56 16 34 H 0.05 2.52 6.96 -2.39 -0.02 2.50 16 35 H 0.07 2.54 6.20 -2.39 -0.01 2.53 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 2.52 7.51 -2.39 -0.02 2.50 16 Total: -1.00 -55.39 313.08 0.39 -55.00 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.78 Total: 34.32 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.44 Total: -3.42 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -6.83 Total: -93.66 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.03 Total: -31.91 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -55.39 0.39 -55.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293696145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.963 kcal (2) G-P(sol) polarization free energy of solvation -55.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds