Wall clock time and date at job start Mon Mar 30 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99857 * 2 1 4 4 C 1.53002 * 109.46778 * 270.00235 * 3 2 1 5 5 N 1.46505 * 109.46887 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00200 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00107 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47328 * 89.99771 * 10 8 6 12 12 H 1.48498 * 109.47116 * 209.99943 * 10 8 6 13 13 H 1.48503 * 109.47184 * 329.99342 * 10 8 6 14 14 C 1.34779 * 120.00153 * 180.02562 * 2 1 3 15 15 O 1.21616 * 119.99768 * 179.97438 * 14 2 1 16 16 C 1.47097 * 119.99768 * 359.97438 * 14 2 1 17 17 C 1.33002 * 119.99547 * 187.03524 * 16 14 2 18 18 C 1.51266 * 120.84939 * 12.13649 * 17 16 14 19 19 C 1.53669 * 108.30654 * 128.62184 * 18 17 16 20 20 C 1.52966 * 109.32248 * 54.85974 * 19 18 17 21 21 C 1.52954 * 109.81790 * 296.27361 * 20 19 18 22 22 C 1.51270 * 120.84562 * 192.42852 * 17 16 14 23 23 H 1.08994 * 109.47350 * 90.00240 * 1 2 3 24 24 H 1.09003 * 109.46642 * 209.99970 * 1 2 3 25 25 H 1.09001 * 109.47230 * 329.99513 * 1 2 3 26 26 H 1.08998 * 109.47126 * 30.00054 * 3 2 1 27 27 H 1.08993 * 109.47046 * 150.00693 * 3 2 1 28 28 H 1.08998 * 109.47145 * 299.99808 * 4 3 2 29 29 H 1.09004 * 109.47422 * 60.00444 * 4 3 2 30 30 H 0.97000 * 119.99765 * 0.02562 * 5 4 3 31 31 H 0.97006 * 120.00243 * 180.02562 * 9 8 6 32 32 H 1.07995 * 120.00643 * 7.03038 * 16 14 2 33 33 H 1.09003 * 109.63057 * 248.39096 * 18 17 16 34 34 H 1.08997 * 109.62691 * 8.96827 * 18 17 16 35 35 H 1.08996 * 109.62761 * 294.84756 * 19 18 17 36 36 H 1.08994 * 109.42928 * 174.75870 * 19 18 17 37 37 H 1.09000 * 109.41165 * 176.16780 * 20 19 18 38 38 H 1.08998 * 109.40928 * 56.38180 * 20 19 18 39 39 H 1.08998 * 109.48186 * 303.61916 * 21 20 19 40 40 H 1.08999 * 109.48348 * 183.57854 * 21 20 19 41 41 H 1.09000 * 109.62863 * 351.03224 * 22 17 16 42 42 H 1.09001 * 109.63006 * 111.60740 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1843 2.9795 -1.4426 6 6 3.5270 3.5723 -2.6284 7 1 3.2573 3.1045 -3.5638 8 6 4.2210 4.7744 -2.6285 9 7 4.5501 5.3443 -1.4887 10 14 4.6878 5.5834 -4.2462 11 1 3.5990 6.4977 -4.6748 12 1 5.9427 6.3572 -4.0688 13 1 4.8928 4.5384 -5.2812 14 6 2.1389 -1.1672 -0.0005 15 8 3.3551 -1.1671 -0.0010 16 6 1.4034 -2.4411 -0.0005 17 6 2.0611 -3.5886 0.1400 18 6 3.5111 -3.6039 0.5705 19 6 3.6523 -4.5707 1.7566 20 6 3.0981 -5.9406 1.3617 21 6 1.6000 -5.8304 1.0734 22 6 1.3799 -4.9114 -0.1328 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5137 28 1 3.0415 0.9508 -1.9564 29 1 1.4999 1.8408 -1.9564 30 1 3.4269 3.3995 -0.6025 31 1 5.0347 6.1846 -1.4887 32 1 0.3295 -2.4447 -0.1146 33 1 4.1352 -3.9415 -0.2570 34 1 3.8131 -2.6019 0.8754 35 1 3.0955 -4.1858 2.6109 36 1 4.7050 -4.6672 2.0223 37 1 3.2592 -6.6454 2.1774 38 1 3.6135 -6.2965 0.4696 39 1 1.0918 -5.4157 1.9440 40 1 1.1982 -6.8198 0.8547 41 1 0.3120 -4.7498 -0.2799 42 1 1.8101 -5.3678 -1.0242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317569538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:09 Heat of formation + Delta-G solvation = -14.436345 kcal Electronic energy + Delta-G solvation = -20111.032459 eV Core-core repulsion = 17091.421434 eV Total energy + Delta-G solvation = -3019.611024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03317 -38.17880 -35.85203 -34.30150 -32.84715 -31.31143 -31.12784 -28.52785 -27.11757 -25.96873 -23.72155 -23.09914 -21.89771 -21.07572 -19.62541 -18.17609 -17.21633 -16.88140 -15.88040 -15.49435 -14.89518 -14.56656 -14.53675 -14.18548 -13.77585 -13.63276 -13.27257 -13.10990 -12.92289 -12.86322 -12.65325 -12.46178 -12.30357 -11.88301 -11.29879 -11.20811 -11.07123 -10.95046 -10.84802 -10.76754 -10.61986 -10.45827 -10.07212 -9.71215 -9.25775 -8.97711 -8.82790 -8.35132 -6.88469 -5.72008 -3.00907 1.35724 3.20775 3.42601 3.47205 3.52129 3.54519 4.43570 4.51304 4.65375 4.68701 4.76200 4.94993 5.03798 5.13866 5.21161 5.25201 5.38744 5.43695 5.45192 5.54113 5.64691 5.66154 5.73006 5.74063 5.80856 5.86100 5.90161 5.90497 6.08589 6.12722 6.17440 6.22462 6.45986 6.60501 6.69625 6.84136 6.99612 7.63877 7.74480 8.42907 8.47243 9.57472 10.14235 10.49544 11.51043 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034015 B = 0.003326 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.961711 B = 8417.398320 C = 8710.737711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.609 5.609 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.544 3.456 15 O -0.532 6.532 16 C -0.231 4.231 17 C -0.024 4.024 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.093 4.093 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.017 0.983 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 -22.389 7.338 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.336 3.664 15 O -0.411 6.411 16 C -0.251 4.251 17 C -0.026 4.026 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.130 4.130 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.438 -22.331 7.168 25.281 hybrid contribution 0.071 0.693 -0.725 1.005 sum -9.367 -21.639 6.443 24.444 Atomic orbital electron populations 1.21818 0.79822 1.02809 1.01921 1.47719 1.06853 1.06339 1.73271 1.21712 0.97472 0.83172 0.99084 1.20911 0.95035 0.89315 0.93296 1.42219 1.67135 1.21627 1.06559 1.19216 1.29266 1.02308 0.85998 0.91229 1.24744 1.01317 0.98079 0.96923 1.69662 1.45162 1.19542 1.23935 0.86160 0.77652 0.79234 0.82992 1.21732 1.21726 1.20749 1.18564 0.87265 0.84093 0.76491 1.90639 1.13711 1.86642 1.50144 1.22411 0.99921 0.91987 1.10822 1.22707 0.96494 0.93811 0.89568 1.21701 0.92323 1.04003 0.97889 1.21675 1.01013 0.94642 0.98080 1.21570 0.95626 0.97513 1.01408 1.21567 0.96819 0.99130 0.97865 1.20963 1.00194 0.92927 0.98880 0.92576 0.91211 0.90930 0.90586 0.89731 0.95936 0.96499 0.78284 0.93513 0.85567 0.90621 0.85937 0.92125 0.91588 0.92090 0.91859 0.91783 0.91683 0.90900 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.15 59.85 0.61 1.45 16 2 N -0.61 -9.18 2.87 -182.98 -0.53 -9.70 16 3 C 0.11 1.95 5.56 -4.04 -0.02 1.93 16 4 C 0.14 3.16 6.58 -4.04 -0.03 3.14 16 5 N -0.73 -19.68 5.60 -59.90 -0.34 -20.01 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 10 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.54 8.66 7.48 -12.67 -0.09 8.56 16 15 O -0.53 -10.32 12.80 5.26 0.07 -10.25 16 16 C -0.23 -2.76 8.76 -37.81 -0.33 -3.10 16 17 C -0.02 -0.27 5.38 -100.61 -0.54 -0.81 16 18 C -0.12 -1.50 5.32 -27.26 -0.15 -1.64 16 19 C -0.12 -1.12 5.95 -26.40 -0.16 -1.27 16 20 C -0.12 -0.96 5.81 -26.77 -0.16 -1.11 16 21 C -0.12 -0.83 5.94 -26.63 -0.16 -0.98 16 22 C -0.09 -0.74 6.04 -27.48 -0.17 -0.91 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 25 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 26 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 27 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.13 1.16 6.26 -52.49 -0.33 0.83 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.12 1.88 4.79 -52.87 -0.25 1.63 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -33.78 335.41 -8.50 -42.28 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.03 Total: 5.31 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.44 Total: -2.40 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.14 Total: -58.08 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.78 -8.50 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317569538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.845 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds