Wall clock time and date at job start Mon Mar 30 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99857 * 2 1 4 4 C 1.53002 * 109.46778 * 270.00235 * 3 2 1 5 5 N 1.46505 * 109.46887 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00200 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00107 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47328 * 89.99771 * 10 8 6 12 12 H 1.48498 * 109.47116 * 209.99943 * 10 8 6 13 13 H 1.48503 * 109.47184 * 329.99342 * 10 8 6 14 14 C 1.34779 * 120.00153 * 180.02562 * 2 1 3 15 15 O 1.21616 * 119.99768 * 179.97438 * 14 2 1 16 16 C 1.47097 * 119.99768 * 359.97438 * 14 2 1 17 17 C 1.33002 * 119.99547 * 187.03524 * 16 14 2 18 18 C 1.51266 * 120.84939 * 12.13649 * 17 16 14 19 19 C 1.53669 * 108.30654 * 128.62184 * 18 17 16 20 20 C 1.52966 * 109.32248 * 54.85974 * 19 18 17 21 21 C 1.52954 * 109.81790 * 296.27361 * 20 19 18 22 22 C 1.51270 * 120.84562 * 192.42852 * 17 16 14 23 23 H 1.08994 * 109.47350 * 90.00240 * 1 2 3 24 24 H 1.09003 * 109.46642 * 209.99970 * 1 2 3 25 25 H 1.09001 * 109.47230 * 329.99513 * 1 2 3 26 26 H 1.08998 * 109.47126 * 30.00054 * 3 2 1 27 27 H 1.08993 * 109.47046 * 150.00693 * 3 2 1 28 28 H 1.08998 * 109.47145 * 299.99808 * 4 3 2 29 29 H 1.09004 * 109.47422 * 60.00444 * 4 3 2 30 30 H 0.97000 * 119.99765 * 0.02562 * 5 4 3 31 31 H 0.97006 * 120.00243 * 180.02562 * 9 8 6 32 32 H 1.07995 * 120.00643 * 7.03038 * 16 14 2 33 33 H 1.09003 * 109.63057 * 248.39096 * 18 17 16 34 34 H 1.08997 * 109.62691 * 8.96827 * 18 17 16 35 35 H 1.08996 * 109.62761 * 294.84756 * 19 18 17 36 36 H 1.08994 * 109.42928 * 174.75870 * 19 18 17 37 37 H 1.09000 * 109.41165 * 176.16780 * 20 19 18 38 38 H 1.08998 * 109.40928 * 56.38180 * 20 19 18 39 39 H 1.08998 * 109.48186 * 303.61916 * 21 20 19 40 40 H 1.08999 * 109.48348 * 183.57854 * 21 20 19 41 41 H 1.09000 * 109.62863 * 351.03224 * 22 17 16 42 42 H 1.09001 * 109.63006 * 111.60740 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1843 2.9795 -1.4426 6 6 3.5270 3.5723 -2.6284 7 1 3.2573 3.1045 -3.5638 8 6 4.2210 4.7744 -2.6285 9 7 4.5501 5.3443 -1.4887 10 14 4.6878 5.5834 -4.2462 11 1 3.5990 6.4977 -4.6748 12 1 5.9427 6.3572 -4.0688 13 1 4.8928 4.5384 -5.2812 14 6 2.1389 -1.1672 -0.0005 15 8 3.3551 -1.1671 -0.0010 16 6 1.4034 -2.4411 -0.0005 17 6 2.0611 -3.5886 0.1400 18 6 3.5111 -3.6039 0.5705 19 6 3.6523 -4.5707 1.7566 20 6 3.0981 -5.9406 1.3617 21 6 1.6000 -5.8304 1.0734 22 6 1.3799 -4.9114 -0.1328 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5137 28 1 3.0415 0.9508 -1.9564 29 1 1.4999 1.8408 -1.9564 30 1 3.4269 3.3995 -0.6025 31 1 5.0347 6.1846 -1.4887 32 1 0.3295 -2.4447 -0.1146 33 1 4.1352 -3.9415 -0.2570 34 1 3.8131 -2.6019 0.8754 35 1 3.0955 -4.1858 2.6109 36 1 4.7050 -4.6672 2.0223 37 1 3.2592 -6.6454 2.1774 38 1 3.6135 -6.2965 0.4696 39 1 1.0918 -5.4157 1.9440 40 1 1.1982 -6.8198 0.8547 41 1 0.3120 -4.7498 -0.2799 42 1 1.8101 -5.3678 -1.0242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317569538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:09 Heat of formation + Delta-G solvation = -35.794547 kcal Electronic energy + Delta-G solvation = -20111.958620 eV Core-core repulsion = 17091.421434 eV Total energy + Delta-G solvation = -3020.537186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18639 -39.04501 -37.34566 -36.08576 -33.86541 -33.21077 -31.86428 -30.15779 -28.05550 -27.23141 -25.53685 -23.86008 -23.50087 -22.12576 -20.66538 -19.27433 -19.12518 -18.11506 -17.14842 -16.71965 -16.34633 -15.93342 -15.52453 -15.27688 -15.19239 -15.02705 -14.72614 -14.41775 -14.27023 -13.82753 -13.52964 -13.36130 -13.17302 -13.07020 -12.88577 -12.74655 -12.65824 -12.32017 -12.14982 -11.99418 -11.90391 -11.74803 -11.58719 -11.16776 -11.00370 -10.37908 -9.94650 -9.57753 -9.09608 -8.00041 -5.31316 0.38705 1.44477 1.47663 1.56239 2.02732 2.29716 2.54468 3.32894 3.58000 3.78783 3.95193 4.05007 4.06744 4.10473 4.21705 4.23971 4.31798 4.38143 4.46769 4.51296 4.53905 4.64741 4.72213 4.80997 4.91200 4.97026 5.01549 5.05080 5.09474 5.14893 5.19016 5.20114 5.34414 5.41253 5.45109 5.56763 5.64021 5.71146 6.21392 6.49306 7.24252 7.27371 7.98465 8.24759 9.23396 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034015 B = 0.003326 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.961711 B = 8417.398320 C = 8710.737711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.611 5.611 3 C 0.123 3.877 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.531 3.469 15 O -0.581 6.581 16 C -0.240 4.240 17 C -0.016 4.016 18 C -0.129 4.129 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.089 4.089 23 H 0.063 0.937 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.058 0.942 28 H -0.003 1.003 29 H 0.029 0.971 30 H 0.376 0.624 31 H 0.254 0.746 32 H 0.162 0.838 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.284 -24.177 6.875 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.342 5.342 3 C -0.001 4.001 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.197 1.197 14 C 0.325 3.675 15 O -0.464 6.464 16 C -0.261 4.261 17 C -0.018 4.018 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.126 4.126 23 H 0.082 0.918 24 H 0.119 0.881 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.015 0.985 29 H 0.046 0.954 30 H 0.208 0.792 31 H 0.063 0.937 32 H 0.179 0.821 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.698 -24.154 6.701 27.662 hybrid contribution 0.790 1.190 -0.553 1.532 sum -10.909 -22.964 6.148 26.156 Atomic orbital electron populations 1.22135 0.76677 1.05006 1.03098 1.47830 1.08709 1.04864 1.72797 1.21337 0.97372 0.85316 0.96108 1.20937 0.94138 0.86716 0.95941 1.42401 1.67660 1.22961 1.05630 1.19593 1.29289 1.02718 0.86901 0.91005 1.25650 1.01504 0.98766 1.00627 1.69820 1.45946 1.19868 1.26168 0.85057 0.77198 0.78197 0.78782 1.20658 1.21800 1.19707 1.19381 0.87047 0.85535 0.75550 1.90641 1.16008 1.87446 1.52307 1.22465 1.01283 0.89903 1.12411 1.23034 0.95692 0.95429 0.87683 1.21606 0.93526 1.02725 0.98676 1.21645 1.01234 0.95395 0.96778 1.21573 0.96317 0.96101 1.01962 1.21581 0.96065 1.00024 0.97423 1.21053 1.01124 0.90902 0.99534 0.91813 0.88097 0.89788 0.88687 0.92339 0.98519 0.95356 0.79231 0.93704 0.82067 0.91530 0.89510 0.92270 0.91768 0.90654 0.91798 0.91594 0.89490 0.88703 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.15 127.77 1.30 2.64 16 2 N -0.61 -18.16 2.87 -851.06 -2.45 -20.61 16 3 C 0.12 4.53 5.56 86.38 0.48 5.01 16 4 C 0.15 6.81 6.58 86.38 0.57 7.38 16 5 N -0.74 -41.05 5.60 -343.44 -1.92 -42.97 16 6 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 9 N -0.97 -61.18 13.06 21.65 0.28 -60.89 16 10 Si 0.98 47.68 29.55 68.60 2.03 49.70 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.53 17.14 7.48 86.57 0.65 17.78 16 15 O -0.58 -24.01 12.80 -4.08 -0.05 -24.06 16 16 C -0.24 -5.39 8.76 23.43 0.21 -5.19 16 17 C -0.02 -0.34 5.38 -17.25 -0.09 -0.44 16 18 C -0.13 -3.23 5.32 30.25 0.16 -3.07 16 19 C -0.11 -2.12 5.95 30.81 0.18 -1.94 16 20 C -0.12 -1.62 5.81 30.57 0.18 -1.45 16 21 C -0.11 -1.23 5.94 30.66 0.18 -1.05 16 22 C -0.09 -1.15 6.04 30.11 0.18 -0.97 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.10 1.26 6.20 -2.39 -0.01 1.24 16 25 H 0.08 1.39 7.89 -2.39 -0.02 1.37 16 26 H 0.09 3.12 7.89 -2.39 -0.02 3.10 16 27 H 0.06 2.46 7.42 -2.39 -0.02 2.44 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.38 21.60 7.67 -92.71 -0.71 20.89 16 31 H 0.25 15.41 8.31 -92.70 -0.77 14.63 16 32 H 0.16 2.37 6.26 -2.91 -0.02 2.35 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.89 4.79 -17.32 -0.08 2.81 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 0.86 7.92 -2.39 -0.02 0.84 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.55 335.41 3.40 -72.15 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.21 Total: 26.14 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.30 Total: 0.54 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -4.09 Total: -124.47 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal Total: -75.55 3.40 -72.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317569538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.353 kcal (2) G-P(sol) polarization free energy of solvation -75.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds