Wall clock time and date at job start Mon Mar 30 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00335 * 2 1 4 4 C 1.53004 * 109.46862 * 90.00258 * 3 2 1 5 5 N 1.46506 * 109.47270 * 180.02562 * 4 3 2 6 6 C 1.36928 * 119.99755 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00418 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99452 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00401 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99761 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47429 * 89.99712 * 10 8 6 12 12 H 1.48497 * 109.47128 * 209.99977 * 10 8 6 13 13 H 1.48499 * 109.47013 * 329.99504 * 10 8 6 14 14 C 1.34776 * 119.99986 * 180.02562 * 2 1 3 15 15 O 1.21285 * 120.00220 * 184.55975 * 14 2 1 16 16 C 1.50697 * 120.00217 * 4.55967 * 14 2 1 17 17 H 1.08996 * 109.35791 * 45.30337 * 16 14 2 18 18 C 1.52883 * 109.35501 * 285.58585 * 16 14 2 19 19 C 1.53302 * 108.57728 * 185.26465 * 18 16 14 20 20 C 1.52872 * 108.58868 * 74.44814 * 19 18 16 21 21 C 1.52077 * 110.51304 * 305.10547 * 20 19 18 22 22 H 1.09001 * 114.63853 * 165.62961 * 21 20 19 23 23 C 1.52301 * 119.83785 * 310.44764 * 21 20 19 24 24 C 1.52061 * 120.01920 * 21.70232 * 21 20 19 25 25 H 1.09002 * 117.25738 * 144.43435 * 24 21 20 26 26 H 1.08997 * 109.47745 * 84.51174 * 1 2 3 27 27 H 1.09006 * 109.47023 * 204.51641 * 1 2 3 28 28 H 1.09003 * 109.47161 * 324.50759 * 1 2 3 29 29 H 1.09001 * 109.47354 * 330.00932 * 3 2 1 30 30 H 1.08995 * 109.47778 * 210.00239 * 3 2 1 31 31 H 1.08995 * 109.47428 * 300.00598 * 4 3 2 32 32 H 1.09005 * 109.46971 * 60.00844 * 4 3 2 33 33 H 0.96999 * 119.99164 * 0.02562 * 5 4 3 34 34 H 0.96996 * 120.00352 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.61933 * 304.99160 * 18 16 14 36 36 H 1.09002 * 109.62009 * 65.35887 * 18 16 14 37 37 H 1.09000 * 109.61523 * 194.17433 * 19 18 16 38 38 H 1.08996 * 109.62230 * 314.71545 * 19 18 16 39 39 H 1.08993 * 109.27078 * 65.37335 * 20 19 18 40 40 H 1.09001 * 109.27149 * 184.84213 * 20 19 18 41 41 H 1.09003 * 117.54065 * 217.19232 * 23 21 20 42 42 H 1.09002 * 117.54191 * 2.44607 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 7 3.1846 2.9793 1.4427 6 6 3.5273 3.5718 2.6286 7 1 3.2584 3.1036 3.5639 8 6 4.2205 4.7746 2.6286 9 7 4.5479 5.3456 1.4889 10 14 4.6887 5.5827 4.2464 11 1 6.0257 5.0977 4.6734 12 1 4.7299 7.0565 4.0699 13 1 3.6825 5.2362 5.2822 14 6 2.1388 -1.1672 -0.0005 15 8 3.3488 -1.1689 0.0830 16 6 1.3890 -2.4702 -0.1049 17 1 0.6341 -2.3910 -0.8871 18 6 0.7061 -2.7701 1.2297 19 6 0.0604 -4.1580 1.1469 20 6 1.1627 -5.2140 1.2297 21 6 2.2157 -4.9701 0.1599 22 1 3.1459 -5.5197 0.3042 23 6 1.7902 -4.7498 -1.2858 24 6 2.3656 -3.5894 -0.4592 25 1 3.3735 -3.2653 -0.7185 26 1 -0.3634 0.0983 -1.0229 27 1 -0.3633 -0.9351 0.4265 28 1 -0.3633 0.8367 0.5967 29 1 1.6084 2.0284 -0.5137 30 1 3.1499 1.1384 -0.5138 31 1 1.5002 1.8405 1.9565 32 1 3.0418 0.9506 1.9563 33 1 3.4265 3.3996 0.6026 34 1 5.0326 6.1857 1.4889 35 1 1.4457 -2.7576 2.0302 36 1 -0.0588 -2.0188 1.4264 37 1 -0.6343 -4.2884 1.9767 38 1 -0.4721 -4.2582 0.2012 39 1 1.6314 -5.1684 2.2127 40 1 0.7258 -6.2022 1.0856 41 1 2.4214 -5.1735 -2.0670 42 1 0.7216 -4.7347 -1.5000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317605562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:48 Heat of formation + Delta-G solvation = -4.149882 kcal Electronic energy + Delta-G solvation = -20566.179168 eV Core-core repulsion = 17547.014198 eV Total energy + Delta-G solvation = -3019.164970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65598 -38.65818 -35.85031 -34.43368 -33.30819 -31.78727 -30.87767 -28.11586 -26.62921 -25.24569 -23.63901 -22.91700 -21.85146 -21.08726 -19.30863 -18.53670 -17.18924 -17.08020 -16.44145 -15.43875 -15.30245 -14.58104 -14.40505 -14.05048 -13.96834 -13.67508 -13.32162 -13.17277 -13.11716 -12.85946 -12.56906 -12.23080 -12.13199 -11.68184 -11.38658 -11.20749 -11.12449 -10.95150 -10.86036 -10.63793 -10.49194 -10.08149 -10.05244 -9.86018 -9.73152 -9.43795 -8.83621 -8.43800 -6.89394 -5.72761 -3.01730 2.78153 3.12356 3.46999 3.51734 3.53398 3.59229 4.33693 4.36224 4.54697 4.64688 4.76989 4.84951 4.88929 4.97089 5.09701 5.17083 5.22525 5.36613 5.38028 5.49131 5.55176 5.57326 5.59767 5.68373 5.77069 5.81755 5.87256 5.89405 5.94330 6.04628 6.08238 6.10320 6.17057 6.23814 6.61988 6.79406 6.97300 7.57278 7.73605 8.36641 8.46025 9.56661 10.13332 10.48591 11.50292 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.003617 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.381062 B = 7738.818199 C = 7838.191301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.612 5.612 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.515 3.485 15 O -0.530 6.530 16 C -0.071 4.071 17 H 0.093 0.907 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.090 4.090 21 C -0.137 4.137 22 H 0.099 0.901 23 C -0.185 4.185 24 C -0.133 4.133 25 H 0.119 0.881 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 -21.035 -5.189 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.345 5.345 3 C -0.014 4.014 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.302 3.698 15 O -0.405 6.405 16 C -0.093 4.093 17 H 0.111 0.889 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.127 4.127 21 C -0.156 4.156 22 H 0.117 0.883 23 C -0.221 4.221 24 C -0.151 4.151 25 H 0.137 0.863 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.138 -20.983 -4.979 24.747 hybrid contribution 0.346 0.742 0.531 0.975 sum -11.792 -20.241 -4.448 23.845 Atomic orbital electron populations 1.22072 0.79963 1.03794 1.01875 1.47782 1.06804 1.06288 1.73628 1.21692 0.97321 0.83316 0.99118 1.20903 0.95025 0.89341 0.93265 1.42218 1.67135 1.21628 1.06565 1.19214 1.29387 1.02263 0.85985 0.91221 1.24745 1.01310 0.98044 0.96921 1.69658 1.45107 1.19565 1.23951 0.86163 0.78398 0.78533 0.82950 1.21670 1.21745 1.20766 1.20525 0.87990 0.85076 0.76177 1.90712 1.14218 1.86938 1.48676 1.20755 0.97268 0.91752 0.99494 0.88860 1.21743 1.00097 0.97508 0.96123 1.21600 0.97610 0.94269 1.02157 1.20861 0.95139 0.98688 0.97997 1.21829 1.00672 0.98863 0.94204 0.88326 1.23153 1.01245 1.03710 0.94036 1.22093 1.00635 0.88258 1.04109 0.86322 0.92731 0.90205 0.90741 0.90563 0.89885 0.96536 0.95876 0.78291 0.93503 0.90711 0.90442 0.91245 0.91657 0.91297 0.91537 0.88944 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.00 59.84 0.60 1.26 16 2 N -0.61 -8.92 2.87 -181.58 -0.52 -9.44 16 3 C 0.11 1.93 5.51 -4.04 -0.02 1.91 16 4 C 0.14 3.14 6.58 -4.04 -0.03 3.12 16 5 N -0.73 -19.62 5.60 -59.90 -0.34 -19.96 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.52 7.96 6.89 -10.99 -0.08 7.89 16 15 O -0.53 -10.60 15.11 5.55 0.08 -10.51 16 16 C -0.07 -0.79 1.64 -91.98 -0.15 -0.94 16 17 H 0.09 0.86 7.53 -51.93 -0.39 0.46 16 18 C -0.12 -1.11 4.88 -26.64 -0.13 -1.24 16 19 C -0.12 -0.88 5.70 -26.64 -0.15 -1.03 16 20 C -0.09 -0.71 5.93 -27.27 -0.16 -0.87 16 21 C -0.14 -1.29 6.00 -91.93 -0.55 -1.84 16 22 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 23 C -0.18 -1.61 9.66 -26.75 -0.26 -1.87 16 24 C -0.13 -1.51 5.41 -90.91 -0.49 -2.00 16 25 H 0.12 1.65 6.98 -51.93 -0.36 1.29 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.63 3.98 -51.93 -0.21 0.43 16 28 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 29 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.08 1.65 7.49 -51.93 -0.39 1.26 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.38 10.66 7.67 -40.82 -0.31 10.34 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 36 H 0.08 0.65 5.49 -51.93 -0.29 0.36 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.43 7.11 -51.93 -0.37 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.71 7.26 -51.93 -0.38 0.34 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -34.13 330.25 -8.64 -42.78 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.88 Total: 5.70 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.67 Total: -3.25 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.13 Total: -57.71 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.13 -8.64 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317605562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.625 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds