Wall clock time and date at job start Mon Mar 30 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00335 * 2 1 4 4 C 1.53004 * 109.46862 * 90.00258 * 3 2 1 5 5 N 1.46506 * 109.47270 * 180.02562 * 4 3 2 6 6 C 1.36928 * 119.99755 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00418 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99452 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00401 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99761 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47429 * 89.99712 * 10 8 6 12 12 H 1.48497 * 109.47128 * 209.99977 * 10 8 6 13 13 H 1.48499 * 109.47013 * 329.99504 * 10 8 6 14 14 C 1.34776 * 119.99986 * 180.02562 * 2 1 3 15 15 O 1.21285 * 120.00220 * 184.55975 * 14 2 1 16 16 C 1.50697 * 120.00217 * 4.55967 * 14 2 1 17 17 H 1.08996 * 109.35791 * 45.30337 * 16 14 2 18 18 C 1.52883 * 109.35501 * 285.58585 * 16 14 2 19 19 C 1.53302 * 108.57728 * 185.26465 * 18 16 14 20 20 C 1.52872 * 108.58868 * 74.44814 * 19 18 16 21 21 C 1.52077 * 110.51304 * 305.10547 * 20 19 18 22 22 H 1.09001 * 114.63853 * 165.62961 * 21 20 19 23 23 C 1.52301 * 119.83785 * 310.44764 * 21 20 19 24 24 C 1.52061 * 120.01920 * 21.70232 * 21 20 19 25 25 H 1.09002 * 117.25738 * 144.43435 * 24 21 20 26 26 H 1.08997 * 109.47745 * 84.51174 * 1 2 3 27 27 H 1.09006 * 109.47023 * 204.51641 * 1 2 3 28 28 H 1.09003 * 109.47161 * 324.50759 * 1 2 3 29 29 H 1.09001 * 109.47354 * 330.00932 * 3 2 1 30 30 H 1.08995 * 109.47778 * 210.00239 * 3 2 1 31 31 H 1.08995 * 109.47428 * 300.00598 * 4 3 2 32 32 H 1.09005 * 109.46971 * 60.00844 * 4 3 2 33 33 H 0.96999 * 119.99164 * 0.02562 * 5 4 3 34 34 H 0.96996 * 120.00352 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.61933 * 304.99160 * 18 16 14 36 36 H 1.09002 * 109.62009 * 65.35887 * 18 16 14 37 37 H 1.09000 * 109.61523 * 194.17433 * 19 18 16 38 38 H 1.08996 * 109.62230 * 314.71545 * 19 18 16 39 39 H 1.08993 * 109.27078 * 65.37335 * 20 19 18 40 40 H 1.09001 * 109.27149 * 184.84213 * 20 19 18 41 41 H 1.09003 * 117.54065 * 217.19232 * 23 21 20 42 42 H 1.09002 * 117.54191 * 2.44607 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 7 3.1846 2.9793 1.4427 6 6 3.5273 3.5718 2.6286 7 1 3.2584 3.1036 3.5639 8 6 4.2205 4.7746 2.6286 9 7 4.5479 5.3456 1.4889 10 14 4.6887 5.5827 4.2464 11 1 6.0257 5.0977 4.6734 12 1 4.7299 7.0565 4.0699 13 1 3.6825 5.2362 5.2822 14 6 2.1388 -1.1672 -0.0005 15 8 3.3488 -1.1689 0.0830 16 6 1.3890 -2.4702 -0.1049 17 1 0.6341 -2.3910 -0.8871 18 6 0.7061 -2.7701 1.2297 19 6 0.0604 -4.1580 1.1469 20 6 1.1627 -5.2140 1.2297 21 6 2.2157 -4.9701 0.1599 22 1 3.1459 -5.5197 0.3042 23 6 1.7902 -4.7498 -1.2858 24 6 2.3656 -3.5894 -0.4592 25 1 3.3735 -3.2653 -0.7185 26 1 -0.3634 0.0983 -1.0229 27 1 -0.3633 -0.9351 0.4265 28 1 -0.3633 0.8367 0.5967 29 1 1.6084 2.0284 -0.5137 30 1 3.1499 1.1384 -0.5138 31 1 1.5002 1.8405 1.9565 32 1 3.0418 0.9506 1.9563 33 1 3.4265 3.3996 0.6026 34 1 5.0326 6.1857 1.4889 35 1 1.4457 -2.7576 2.0302 36 1 -0.0588 -2.0188 1.4264 37 1 -0.6343 -4.2884 1.9767 38 1 -0.4721 -4.2582 0.2012 39 1 1.6314 -5.1684 2.2127 40 1 0.7258 -6.2022 1.0856 41 1 2.4214 -5.1735 -2.0670 42 1 0.7216 -4.7347 -1.5000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317605562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:48 Heat of formation + Delta-G solvation = -26.189488 kcal Electronic energy + Delta-G solvation = -20567.134877 eV Core-core repulsion = 17547.014198 eV Total energy + Delta-G solvation = -3020.120679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66328 -39.65554 -37.38183 -36.16705 -34.22235 -33.37349 -32.13167 -29.71262 -27.67268 -26.36672 -25.32425 -23.64824 -23.43694 -22.14794 -20.44059 -19.31672 -19.22683 -18.21075 -17.55152 -16.87522 -16.49283 -16.16623 -15.49705 -15.35531 -15.11514 -15.01658 -14.66682 -14.57423 -14.29289 -13.88433 -13.63300 -13.11666 -13.08506 -12.97233 -12.88000 -12.72292 -12.48253 -12.31048 -12.15282 -12.03113 -11.89814 -11.82494 -11.23148 -11.01429 -10.87544 -10.65218 -10.52017 -9.69692 -9.10107 -8.00389 -5.31699 1.44197 1.47648 1.55801 1.59496 1.95544 2.53829 2.84235 3.32583 3.42276 3.60221 3.83421 3.99261 4.01066 4.04148 4.16232 4.21004 4.22561 4.28112 4.32163 4.45305 4.49508 4.54119 4.63961 4.71318 4.83464 4.87589 4.92770 4.97899 5.05219 5.13503 5.16847 5.21252 5.28053 5.34555 5.40292 5.41048 5.48117 5.54130 6.20937 6.41658 7.17200 7.26934 7.98025 8.24155 9.23063 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.003617 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.381062 B = 7738.818199 C = 7838.191301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.254 4.254 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.505 3.495 15 O -0.589 6.589 16 C -0.058 4.058 17 H 0.123 0.877 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.091 4.091 21 C -0.137 4.137 22 H 0.091 0.909 23 C -0.161 4.161 24 C -0.164 4.164 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.031 0.969 32 H -0.004 1.004 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -22.348 -4.903 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.342 5.342 3 C -0.002 4.002 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.191 1.191 14 C 0.295 3.705 15 O -0.469 6.469 16 C -0.079 4.079 17 H 0.141 0.859 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.128 4.128 21 C -0.155 4.155 22 H 0.109 0.891 23 C -0.198 4.198 24 C -0.183 4.183 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.014 0.986 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.127 -22.332 -4.688 27.377 hybrid contribution 1.282 1.103 0.422 1.743 sum -13.846 -21.229 -4.266 25.701 Atomic orbital electron populations 1.22416 0.76603 1.05346 1.03897 1.47900 1.08744 1.04716 1.72843 1.21324 0.97195 0.85578 0.96152 1.20933 0.94216 0.86677 0.95911 1.42404 1.67682 1.22973 1.05629 1.19598 1.29385 1.02652 0.86904 0.90960 1.25647 1.01500 0.98737 1.00605 1.69815 1.45911 1.19888 1.26187 0.85067 0.78108 0.77211 0.78912 1.21514 1.21479 1.19147 1.21490 0.87638 0.86654 0.74719 1.90685 1.17048 1.87845 1.51290 1.20781 0.97106 0.88606 1.01367 0.85901 1.21774 0.99711 0.99811 0.94057 1.21604 0.97378 0.91991 1.03934 1.20913 0.94926 1.00093 0.96851 1.21950 1.01191 0.96886 0.95502 0.89074 1.23240 1.02415 1.00587 0.93536 1.21978 0.99376 0.89600 1.07338 0.90209 0.90165 0.87638 0.90552 0.88537 0.92672 0.95132 0.98624 0.79257 0.93705 0.93498 0.88831 0.89475 0.89751 0.92150 0.89496 0.88613 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 10.00 127.77 1.28 2.27 16 2 N -0.61 -17.42 2.87 -846.77 -2.43 -19.85 16 3 C 0.12 4.43 5.51 86.38 0.48 4.90 16 4 C 0.15 6.75 6.58 86.38 0.57 7.32 16 5 N -0.74 -40.94 5.60 -343.43 -1.92 -42.86 16 6 C -0.25 -15.09 9.99 84.04 0.84 -14.25 16 7 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 9 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 10 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 C 0.51 15.91 6.89 87.66 0.60 16.51 16 15 O -0.59 -25.26 15.11 -3.05 -0.05 -25.30 16 16 C -0.06 -1.20 1.64 -11.68 -0.02 -1.22 16 17 H 0.12 1.81 7.53 -2.39 -0.02 1.79 16 18 C -0.12 -1.96 4.88 30.66 0.15 -1.81 16 19 C -0.11 -1.23 5.70 30.65 0.17 -1.06 16 20 C -0.09 -1.21 5.93 30.25 0.18 -1.03 16 21 C -0.14 -2.42 6.00 -11.64 -0.07 -2.49 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 C -0.16 -2.46 9.66 30.58 0.30 -2.16 16 24 C -0.16 -3.73 5.41 -10.98 -0.06 -3.79 16 25 H 0.08 2.44 6.98 -2.39 -0.02 2.42 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 1.25 3.98 -2.38 -0.01 1.24 16 28 H 0.08 1.32 8.11 -2.39 -0.02 1.30 16 29 H 0.10 3.12 8.07 -2.39 -0.02 3.10 16 30 H 0.05 2.32 7.49 -2.39 -0.02 2.30 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.38 21.55 7.67 -92.71 -0.71 20.84 16 34 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.05 1.06 8.04 -2.39 -0.02 1.04 16 36 H 0.09 1.24 5.49 -2.39 -0.01 1.23 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.67 7.11 -2.39 -0.02 0.65 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.12 1.26 7.26 -2.39 -0.02 1.24 16 Total: -1.00 -77.30 330.25 3.09 -74.22 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.29 Total: 25.67 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.88 Total: -0.65 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -4.07 Total: -123.52 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -77.30 3.09 -74.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317605562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.029 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds