Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00323 * 2 1 4 4 C 1.53004 * 109.47105 * 270.00111 * 3 2 1 5 5 N 1.46501 * 109.46733 * 179.97438 * 4 3 2 6 6 C 1.36940 * 119.99624 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00202 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00136 * 179.97438 * 6 5 4 9 9 N 1.31627 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46746 * 90.00171 * 10 8 6 12 12 H 1.48501 * 109.47147 * 209.99712 * 10 8 6 13 13 H 1.48494 * 109.47065 * 330.00118 * 10 8 6 14 14 C 1.34777 * 119.99959 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00369 * 179.97438 * 14 2 1 16 16 C 1.50704 * 119.99906 * 359.97438 * 14 2 1 17 17 H 1.08989 * 109.26483 * 60.49764 * 16 14 2 18 18 C 1.52291 * 110.10691 * 301.94283 * 16 14 2 19 19 C 1.53303 * 109.03306 * 185.11300 * 18 16 14 20 20 C 1.52876 * 108.57763 * 74.00512 * 19 18 16 21 21 C 1.52705 * 110.15182 * 305.47255 * 20 19 18 22 22 H 1.08998 * 115.39161 * 231.21948 * 21 20 19 23 23 C 1.53654 * 116.02824 * 90.21033 * 21 20 19 24 24 C 1.52071 * 109.26571 * 179.97438 * 16 14 2 25 25 H 1.08997 * 114.64088 * 287.10729 * 24 16 14 26 26 H 1.09000 * 109.46911 * 270.00134 * 1 2 3 27 27 H 1.08997 * 109.47041 * 29.99703 * 1 2 3 28 28 H 1.09002 * 109.47316 * 150.00001 * 1 2 3 29 29 H 1.09002 * 109.46912 * 30.00273 * 3 2 1 30 30 H 1.09006 * 109.47176 * 150.00411 * 3 2 1 31 31 H 1.08995 * 109.46998 * 299.99818 * 4 3 2 32 32 H 1.08998 * 109.46805 * 59.99784 * 4 3 2 33 33 H 0.96994 * 120.00648 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99631 * 179.97438 * 9 8 6 35 35 H 1.09008 * 109.75810 * 65.02917 * 18 16 14 36 36 H 1.09009 * 109.03949 * 304.76807 * 18 16 14 37 37 H 1.08998 * 109.61676 * 314.27775 * 19 18 16 38 38 H 1.09004 * 109.61684 * 193.73573 * 19 18 16 39 39 H 1.08998 * 109.35795 * 65.68774 * 20 19 18 40 40 H 1.08996 * 109.35071 * 185.26317 * 20 19 18 41 41 H 1.08991 * 117.54045 * 355.69246 * 23 21 20 42 42 H 1.09001 * 117.53448 * 140.93825 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1846 2.9794 -1.4424 6 6 3.5264 3.5727 -2.6284 7 1 3.2559 3.1053 -3.5637 8 6 4.2195 4.7753 -2.6284 9 7 4.5487 5.3452 -1.4885 10 14 4.6864 5.5843 -4.2461 11 1 3.5971 6.4978 -4.6752 12 1 5.9408 6.3590 -4.0682 13 1 4.8925 4.5392 -5.2808 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0005 17 1 0.7663 -2.5302 -0.8958 18 6 0.4687 -2.5477 1.2134 19 6 -0.1878 -3.9322 1.2589 20 6 0.8575 -4.9523 1.7106 21 6 2.0885 -4.8781 0.8100 22 1 2.4220 -5.8292 0.3950 23 6 3.1918 -3.9056 1.2549 24 6 2.3776 -3.6247 -0.0018 25 1 2.8942 -3.7784 -0.9492 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 3.0415 0.9507 -1.9563 32 1 1.5001 1.8407 -1.9563 33 1 3.4265 3.3997 -0.6025 34 1 5.0334 6.1854 -1.4885 35 1 -0.3015 -1.7796 1.1418 36 1 1.0603 -2.3932 2.1158 37 1 -0.5527 -4.1971 0.2666 38 1 -1.0175 -3.9208 1.9659 39 1 1.1489 -4.7397 2.7392 40 1 0.4310 -5.9540 1.6578 41 1 2.9958 -3.2879 2.1313 42 1 4.2263 -4.2234 1.1243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317605565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = -2.517302 kcal Electronic energy + Delta-G solvation = -20619.781085 eV Core-core repulsion = 17600.686909 eV Total energy + Delta-G solvation = -3019.094176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72591 -38.53549 -35.85772 -34.49243 -33.21376 -31.81162 -30.86768 -28.10451 -26.68468 -25.17243 -23.70383 -22.78150 -21.81565 -21.18475 -19.39507 -18.40479 -17.14438 -16.79194 -16.59599 -15.82269 -15.18664 -14.57202 -14.18140 -13.98851 -13.92607 -13.75850 -13.34289 -13.17041 -13.04450 -12.87613 -12.64404 -12.41469 -11.93616 -11.54283 -11.29414 -11.25850 -11.02109 -10.93550 -10.85140 -10.64276 -10.49937 -10.17977 -10.08342 -9.85089 -9.73033 -9.33548 -8.84238 -8.42924 -6.89961 -5.73257 -3.02337 2.82662 3.08293 3.46271 3.51181 3.53579 3.70294 4.33068 4.45538 4.54683 4.64294 4.77353 4.84801 4.95279 5.00855 5.09255 5.21371 5.27133 5.33181 5.37204 5.43376 5.56257 5.59709 5.69194 5.70709 5.77744 5.80390 5.88961 5.90776 5.96396 6.04292 6.07952 6.12973 6.17185 6.18017 6.61181 6.79043 6.96440 7.58186 7.73061 8.39747 8.45761 9.56175 10.12778 10.47940 11.49753 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040486 B = 0.003566 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.434066 B = 7850.391633 C = 8133.564468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.514 3.486 15 O -0.525 6.525 16 C -0.072 4.072 17 H 0.097 0.903 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.090 4.090 21 C -0.153 4.153 22 H 0.101 0.899 23 C -0.163 4.163 24 C -0.116 4.116 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -20.480 7.555 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.301 3.699 15 O -0.400 6.400 16 C -0.094 4.094 17 H 0.115 0.885 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.127 4.127 21 C -0.171 4.171 22 H 0.119 0.881 23 C -0.200 4.200 24 C -0.135 4.135 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.978 -20.442 7.387 24.818 hybrid contribution 0.372 0.743 -0.729 1.105 sum -11.605 -19.699 6.658 23.813 Atomic orbital electron populations 1.21970 0.80104 1.03275 1.01401 1.47801 1.06716 1.06343 1.73808 1.21688 0.97446 0.83285 0.99046 1.20903 0.95007 0.89339 0.93285 1.42217 1.67152 1.21594 1.06575 1.19214 1.29379 1.02291 0.85981 0.91223 1.24751 1.01291 0.98062 0.96941 1.69668 1.45112 1.19543 1.23939 0.86156 0.77664 0.79230 0.82963 1.21716 1.21716 1.20746 1.20545 0.88080 0.84929 0.76311 1.90726 1.13780 1.87080 1.48431 1.20463 0.96422 0.91675 1.00816 0.88542 1.21810 0.98707 0.98424 0.97456 1.21558 0.97571 0.94338 1.01859 1.21050 0.94054 0.99269 0.98320 1.22316 0.97850 0.94211 1.02698 0.88062 1.22991 0.96246 1.02291 0.98510 1.21373 1.00425 0.94513 0.97147 0.87961 0.92472 0.90732 0.91044 0.90612 0.89793 0.95990 0.96522 0.78274 0.93501 0.89895 0.91465 0.91437 0.91512 0.91710 0.91657 0.89041 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.76 59.84 0.52 1.27 16 2 N -0.61 -8.83 2.87 -181.57 -0.52 -9.35 16 3 C 0.11 1.92 5.52 -4.04 -0.02 1.90 16 4 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 5 N -0.73 -19.58 5.60 -59.91 -0.34 -19.91 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 10 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.51 7.87 7.07 -10.98 -0.08 7.79 16 15 O -0.53 -10.38 15.24 5.56 0.08 -10.29 16 16 C -0.07 -0.80 1.75 -92.60 -0.16 -0.96 16 17 H 0.10 0.93 7.42 -51.94 -0.39 0.55 16 18 C -0.13 -1.08 4.51 -26.94 -0.12 -1.20 16 19 C -0.12 -0.80 5.93 -26.64 -0.16 -0.96 16 20 C -0.09 -0.67 5.83 -26.95 -0.16 -0.83 16 21 C -0.15 -1.39 6.19 -90.89 -0.56 -1.95 16 22 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.16 -1.85 9.15 -26.72 -0.24 -2.10 16 24 C -0.12 -1.32 4.72 -91.88 -0.43 -1.76 16 25 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.46 7.10 -51.93 -0.37 0.09 16 27 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.07 0.55 5.86 -51.93 -0.30 0.25 16 29 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16 30 H 0.08 1.67 7.42 -51.93 -0.39 1.28 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.08 0.60 4.56 -51.92 -0.24 0.36 16 36 H 0.07 0.66 7.11 -51.92 -0.37 0.29 16 37 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 1.09 7.26 -51.93 -0.38 0.71 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -34.08 328.96 -8.72 -42.80 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.92 Total: 5.41 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.69 Total: -3.34 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.13 Total: -57.55 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.08 -8.72 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317605565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.286 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds