Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00323 * 2 1 4 4 C 1.53004 * 109.47105 * 270.00111 * 3 2 1 5 5 N 1.46501 * 109.46733 * 179.97438 * 4 3 2 6 6 C 1.36940 * 119.99624 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00202 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00136 * 179.97438 * 6 5 4 9 9 N 1.31627 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46746 * 90.00171 * 10 8 6 12 12 H 1.48501 * 109.47147 * 209.99712 * 10 8 6 13 13 H 1.48494 * 109.47065 * 330.00118 * 10 8 6 14 14 C 1.34777 * 119.99959 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00369 * 179.97438 * 14 2 1 16 16 C 1.50704 * 119.99906 * 359.97438 * 14 2 1 17 17 H 1.08989 * 109.26483 * 60.49764 * 16 14 2 18 18 C 1.52291 * 110.10691 * 301.94283 * 16 14 2 19 19 C 1.53303 * 109.03306 * 185.11300 * 18 16 14 20 20 C 1.52876 * 108.57763 * 74.00512 * 19 18 16 21 21 C 1.52705 * 110.15182 * 305.47255 * 20 19 18 22 22 H 1.08998 * 115.39161 * 231.21948 * 21 20 19 23 23 C 1.53654 * 116.02824 * 90.21033 * 21 20 19 24 24 C 1.52071 * 109.26571 * 179.97438 * 16 14 2 25 25 H 1.08997 * 114.64088 * 287.10729 * 24 16 14 26 26 H 1.09000 * 109.46911 * 270.00134 * 1 2 3 27 27 H 1.08997 * 109.47041 * 29.99703 * 1 2 3 28 28 H 1.09002 * 109.47316 * 150.00001 * 1 2 3 29 29 H 1.09002 * 109.46912 * 30.00273 * 3 2 1 30 30 H 1.09006 * 109.47176 * 150.00411 * 3 2 1 31 31 H 1.08995 * 109.46998 * 299.99818 * 4 3 2 32 32 H 1.08998 * 109.46805 * 59.99784 * 4 3 2 33 33 H 0.96994 * 120.00648 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99631 * 179.97438 * 9 8 6 35 35 H 1.09008 * 109.75810 * 65.02917 * 18 16 14 36 36 H 1.09009 * 109.03949 * 304.76807 * 18 16 14 37 37 H 1.08998 * 109.61676 * 314.27775 * 19 18 16 38 38 H 1.09004 * 109.61684 * 193.73573 * 19 18 16 39 39 H 1.08998 * 109.35795 * 65.68774 * 20 19 18 40 40 H 1.08996 * 109.35071 * 185.26317 * 20 19 18 41 41 H 1.08991 * 117.54045 * 355.69246 * 23 21 20 42 42 H 1.09001 * 117.53448 * 140.93825 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1846 2.9794 -1.4424 6 6 3.5264 3.5727 -2.6284 7 1 3.2559 3.1053 -3.5637 8 6 4.2195 4.7753 -2.6284 9 7 4.5487 5.3452 -1.4885 10 14 4.6864 5.5843 -4.2461 11 1 3.5971 6.4978 -4.6752 12 1 5.9408 6.3590 -4.0682 13 1 4.8925 4.5392 -5.2808 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1673 -0.0010 16 6 1.3853 -2.4723 -0.0005 17 1 0.7663 -2.5302 -0.8958 18 6 0.4687 -2.5477 1.2134 19 6 -0.1878 -3.9322 1.2589 20 6 0.8575 -4.9523 1.7106 21 6 2.0885 -4.8781 0.8100 22 1 2.4220 -5.8292 0.3950 23 6 3.1918 -3.9056 1.2549 24 6 2.3776 -3.6247 -0.0018 25 1 2.8942 -3.7784 -0.9492 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 3.0415 0.9507 -1.9563 32 1 1.5001 1.8407 -1.9563 33 1 3.4265 3.3997 -0.6025 34 1 5.0334 6.1854 -1.4885 35 1 -0.3015 -1.7796 1.1418 36 1 1.0603 -2.3932 2.1158 37 1 -0.5527 -4.1971 0.2666 38 1 -1.0175 -3.9208 1.9659 39 1 1.1489 -4.7397 2.7392 40 1 0.4310 -5.9540 1.6578 41 1 2.9958 -3.2879 2.1313 42 1 4.2263 -4.2234 1.1243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317605565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = -24.457848 kcal Electronic energy + Delta-G solvation = -20620.732499 eV Core-core repulsion = 17600.686909 eV Total energy + Delta-G solvation = -3020.045589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72255 -39.55430 -37.35393 -36.20240 -34.19187 -33.32808 -32.13613 -29.67611 -27.72533 -26.30689 -25.35449 -23.72098 -23.21896 -22.27618 -20.48776 -19.27777 -19.20491 -17.92363 -17.45932 -17.17643 -16.52490 -16.24905 -15.38580 -15.32881 -15.19099 -14.78658 -14.62090 -14.57706 -14.31484 -13.88287 -13.64697 -13.21594 -13.09351 -12.93267 -12.83097 -12.69106 -12.34300 -12.27769 -12.15343 -12.02501 -11.89652 -11.68615 -11.23554 -11.06283 -11.00463 -10.63283 -10.43329 -9.67081 -9.09754 -8.00316 -5.31589 1.44367 1.47550 1.56063 1.65027 1.94757 2.53679 2.83958 3.32731 3.50433 3.64767 3.78548 4.00324 4.01798 4.04731 4.14283 4.22506 4.25919 4.30178 4.33797 4.53191 4.55626 4.56731 4.66120 4.73911 4.75823 4.85489 4.94105 4.99273 5.07208 5.11732 5.12488 5.19272 5.32488 5.34545 5.39328 5.40235 5.52096 5.55042 6.21161 6.44354 7.21721 7.27093 7.98430 8.24192 9.23120 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040486 B = 0.003566 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.434066 B = 7850.391633 C = 8133.564468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.611 5.611 3 C 0.122 3.878 4 C 0.150 3.850 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.505 3.495 15 O -0.582 6.582 16 C -0.063 4.063 17 H 0.118 0.882 18 C -0.123 4.123 19 C -0.110 4.110 20 C -0.092 4.092 21 C -0.122 4.122 22 H 0.113 0.887 23 C -0.184 4.184 24 C -0.134 4.134 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.055 0.945 31 H -0.004 1.004 32 H 0.031 0.969 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.422 -21.717 7.205 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.343 5.343 3 C -0.002 4.002 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.295 3.705 15 O -0.461 6.461 16 C -0.084 4.084 17 H 0.135 0.865 18 C -0.160 4.160 19 C -0.148 4.148 20 C -0.130 4.130 21 C -0.140 4.140 22 H 0.131 0.869 23 C -0.222 4.222 24 C -0.153 4.153 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.014 0.986 32 H 0.049 0.951 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.798 -21.715 7.032 27.203 hybrid contribution 1.236 1.086 -0.609 1.754 sum -13.562 -20.629 6.424 25.510 Atomic orbital electron populations 1.22341 0.76769 1.04782 1.03601 1.47900 1.08661 1.04746 1.73042 1.21304 0.97257 0.85543 0.96079 1.20942 0.94227 0.86686 0.95915 1.42406 1.67709 1.22970 1.05619 1.19598 1.29316 1.02660 0.86913 0.90938 1.25653 1.01523 0.98782 1.00606 1.69826 1.45947 1.19872 1.26169 0.85058 0.77191 0.78201 0.78790 1.20615 1.21875 1.19706 1.21476 0.87759 0.86447 0.74861 1.90698 1.16481 1.87945 1.51006 1.20484 0.96274 0.88511 1.03100 0.86459 1.21847 0.98373 1.00520 0.95244 1.21567 0.97620 0.92514 1.03075 1.21143 0.93361 1.00786 0.97681 1.22441 0.97390 0.93362 1.00812 0.86921 1.22962 0.96660 1.04147 0.98386 1.21427 1.01101 0.96397 0.96391 0.89617 0.89859 0.90538 0.88320 0.88689 0.92660 0.98573 0.95096 0.79267 0.93725 0.87929 0.93008 0.90395 0.89406 0.91817 0.89640 0.90018 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.76 127.77 1.12 2.21 16 2 N -0.61 -17.11 2.87 -846.75 -2.43 -19.55 16 3 C 0.12 4.40 5.52 86.38 0.48 4.88 16 4 C 0.15 6.66 6.58 86.38 0.57 7.23 16 5 N -0.74 -40.73 5.60 -343.45 -1.92 -42.65 16 6 C -0.25 -15.00 9.99 84.03 0.84 -14.16 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 9 N -0.97 -61.01 13.06 21.65 0.28 -60.72 16 10 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 14 C 0.51 15.57 7.07 87.66 0.62 16.19 16 15 O -0.58 -24.31 15.24 -3.03 -0.05 -24.36 16 16 C -0.06 -1.29 1.75 -12.08 -0.02 -1.31 16 17 H 0.12 1.93 7.42 -2.39 -0.02 1.91 16 18 C -0.12 -1.75 4.51 30.46 0.14 -1.61 16 19 C -0.11 -1.09 5.93 30.65 0.18 -0.91 16 20 C -0.09 -1.09 5.83 30.46 0.18 -0.92 16 21 C -0.12 -2.03 6.19 -10.97 -0.07 -2.10 16 22 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 23 C -0.18 -4.33 9.15 30.60 0.28 -4.04 16 24 C -0.13 -3.04 4.72 -11.61 -0.05 -3.10 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.08 1.00 7.10 -2.39 -0.02 0.98 16 27 H 0.08 1.29 8.07 -2.39 -0.02 1.27 16 28 H 0.10 1.12 5.86 -2.39 -0.01 1.11 16 29 H 0.09 3.05 8.07 -2.39 -0.02 3.03 16 30 H 0.05 2.31 7.42 -2.38 -0.02 2.30 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.38 21.47 7.67 -92.71 -0.71 20.76 16 34 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.10 1.05 4.56 -2.38 -0.01 1.04 16 36 H 0.05 0.92 7.11 -2.38 -0.02 0.91 16 37 H 0.08 0.67 8.06 -2.39 -0.02 0.65 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.81 8.06 -2.39 -0.02 0.79 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 2.04 7.26 -2.39 -0.02 2.02 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -76.36 328.96 2.92 -73.44 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.29 Total: 25.87 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.72 Total: -1.54 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -4.07 Total: -122.92 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -76.36 2.92 -73.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317605565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.984 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds