Wall clock time and date at job start Mon Mar 30 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 120.00211 * 2 1 4 4 H 1.08000 * 120.00302 * 202.34668 * 3 2 1 5 5 C 1.38815 * 119.99584 * 22.35238 * 3 2 1 6 6 N 1.31615 * 120.00298 * 11.35014 * 5 3 2 7 7 Si 1.86798 * 119.99708 * 191.35324 * 5 3 2 8 8 H 1.48499 * 109.47396 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47298 * 119.99725 * 7 5 3 10 10 H 1.48499 * 109.47205 * 239.99708 * 7 5 3 11 11 C 1.46499 * 120.00058 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47233 * 269.99659 * 11 2 1 13 13 N 1.46499 * 109.47233 * 179.97438 * 12 11 2 14 14 C 1.46499 * 120.00058 * 90.00340 * 13 12 11 15 15 C 1.34781 * 119.99672 * 269.99461 * 13 12 11 16 16 O 1.21279 * 119.99955 * 0.02562 * 15 13 12 17 17 C 1.50704 * 119.99555 * 179.97438 * 15 13 12 18 18 H 1.08994 * 115.56373 * 325.74298 * 17 15 13 19 19 C 1.53124 * 117.50926 * 111.54549 * 17 15 13 20 20 C 1.52461 * 59.85821 * 107.44554 * 19 17 15 21 21 C 1.53255 * 128.58247 * 117.59786 * 20 19 17 22 22 C 1.53890 * 86.88059 * 114.94512 * 21 20 19 23 23 C 1.53254 * 128.57990 * 242.39727 * 20 19 17 24 24 H 1.09005 * 109.46423 * 274.20320 * 1 2 3 25 25 H 1.09002 * 109.47175 * 34.19995 * 1 2 3 26 26 H 1.08993 * 109.47159 * 154.20714 * 1 2 3 27 27 H 0.96994 * 119.99978 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47420 * 149.99535 * 11 2 1 29 29 H 1.09003 * 109.47334 * 29.99664 * 11 2 1 30 30 H 1.09003 * 109.46964 * 300.00231 * 12 11 2 31 31 H 1.09001 * 109.47019 * 59.99630 * 12 11 2 32 32 H 1.08996 * 109.47375 * 90.00020 * 14 13 12 33 33 H 1.09004 * 109.46833 * 209.99858 * 14 13 12 34 34 H 1.08997 * 109.46721 * 329.99560 * 14 13 12 35 35 H 1.09004 * 117.51513 * 214.89624 * 19 17 15 36 36 H 1.09007 * 117.51261 * 359.97438 * 19 17 15 37 37 H 1.09002 * 113.64532 * 229.44154 * 21 20 19 38 38 H 1.08993 * 113.64764 * 0.45102 * 21 20 19 39 39 H 1.09001 * 113.59140 * 270.38988 * 22 21 20 40 40 H 1.08998 * 113.66159 * 139.58120 * 22 21 20 41 41 H 1.08994 * 113.65004 * 359.55560 * 23 20 19 42 42 H 1.09007 * 113.64409 * 130.47278 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4572 6 7 0.3843 2.2690 1.0939 7 14 2.3366 4.0047 0.1687 8 1 3.6142 3.8167 -0.5645 9 1 1.4266 4.8615 -0.6332 10 1 2.6074 4.6571 1.4749 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 7 3.1846 -2.9800 1.4411 14 6 4.6496 -2.9806 1.4409 15 6 2.5101 -4.1469 1.4410 16 8 1.2973 -4.1464 1.4408 17 6 3.2631 -5.4524 1.4398 18 1 4.2017 -5.4534 0.8857 19 6 3.1853 -6.3149 2.7026 20 6 2.4436 -6.7381 1.4396 21 6 2.6432 -7.9985 0.5910 22 6 1.2212 -8.4070 1.0144 23 6 0.9354 -6.9102 1.2293 24 1 -0.3632 0.0753 1.0250 25 1 -0.3633 0.8500 -0.5776 26 1 -0.3633 -0.9252 -0.4471 27 1 -0.0462 3.0774 1.4130 28 1 3.1499 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5147 30 1 3.0417 -0.9515 1.9558 31 1 1.5002 -1.8415 1.9555 32 1 5.0130 -2.9812 2.4685 33 1 5.0124 -3.8706 0.9267 34 1 5.0131 -2.0907 0.9273 35 1 4.0731 -6.8834 2.9796 36 1 2.5898 -5.9377 3.5341 37 1 2.7408 -7.7965 -0.4757 38 1 3.4199 -8.6625 0.9703 39 1 1.1909 -8.9930 1.9329 40 1 0.6359 -8.8516 0.2096 41 1 0.3431 -6.7016 2.1201 42 1 0.5573 -6.4040 0.3410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320053934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:25 Heat of formation + Delta-G solvation = 42.483843 kcal Electronic energy + Delta-G solvation = -20601.565599 eV Core-core repulsion = 17584.422819 eV Total energy + Delta-G solvation = -3017.142780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31577 -38.45595 -35.94430 -34.77023 -33.68998 -31.40272 -28.67693 -26.41786 -25.79577 -25.72078 -24.60279 -23.15755 -22.36334 -20.42707 -18.97376 -18.12980 -17.06198 -16.62415 -15.88762 -15.39263 -15.28209 -14.74118 -14.47893 -14.11216 -13.58027 -13.06771 -12.94709 -12.61792 -12.47073 -12.36008 -12.21480 -11.99292 -11.87942 -11.61872 -11.49383 -11.21874 -10.85906 -10.79796 -10.47791 -10.39722 -10.13742 -10.05930 -9.91202 -9.80460 -9.71489 -9.32360 -8.58755 -8.29225 -6.71159 -5.69683 -3.16062 2.75646 3.28398 3.38709 3.45373 3.47376 3.73920 4.27593 4.52262 4.54584 4.66415 4.71751 4.82352 4.97692 5.26232 5.30435 5.43356 5.46568 5.53272 5.56196 5.62990 5.73095 5.74238 5.77522 5.80646 5.88091 5.94476 6.12252 6.25190 6.30656 6.36381 6.43060 6.63776 6.79902 6.89254 7.10571 7.46360 7.77817 7.78905 7.85612 8.42122 8.55875 9.26527 9.89952 10.40022 11.35063 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037967 B = 0.003901 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.311947 B = 7175.545500 C = 7590.773123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.600 5.600 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.145 3.855 12 C 0.094 3.906 13 N -0.610 5.610 14 C 0.080 3.920 15 C 0.536 3.464 16 O -0.535 6.535 17 C -0.177 4.177 18 H 0.121 0.879 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.098 4.098 22 C -0.142 4.142 23 C -0.082 4.082 24 H 0.028 0.972 25 H 0.044 0.956 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 -19.123 1.254 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.017 3.983 12 C -0.030 4.030 13 N -0.343 5.343 14 C -0.063 4.063 15 C 0.324 3.676 16 O -0.411 6.411 17 C -0.198 4.198 18 H 0.139 0.861 19 C -0.160 4.160 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.180 4.180 23 C -0.119 4.119 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.070 -18.936 1.298 20.254 hybrid contribution 0.671 1.196 0.045 1.372 sum 7.741 -17.740 1.343 19.402 Atomic orbital electron populations 1.20802 0.82235 0.95624 0.99326 1.43958 1.02105 1.00474 1.85723 1.19271 0.98015 0.85429 1.35853 0.91361 1.25051 0.97690 0.98528 0.98431 1.70091 1.17803 1.26942 1.40305 0.86180 0.78628 0.84306 0.77389 1.20355 1.21615 1.21740 1.21086 0.95737 0.88328 0.93199 1.22592 0.96796 0.81848 1.01809 1.48029 1.06761 1.06706 1.72794 1.21766 0.80301 1.02846 1.01416 1.19576 0.87423 0.84120 0.76509 1.90688 1.13667 1.87094 1.49687 1.22236 1.02037 0.90781 1.04747 0.86109 1.22754 1.01914 1.00589 0.90760 1.22267 0.96640 0.93764 1.00229 1.22494 0.97521 0.94297 0.99234 1.22815 0.96621 0.97177 1.01372 1.22314 0.92671 0.94214 1.02714 0.95356 0.93695 0.98346 0.93780 0.94107 0.94273 0.90678 0.90597 0.92985 0.91550 0.90822 0.87908 0.88190 0.89666 0.91452 0.90315 0.91356 0.91324 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.36 9.01 59.85 0.54 4.90 16 2 N -0.60 -15.81 2.93 -181.12 -0.53 -16.34 16 3 C -0.26 -7.14 9.67 -15.06 -0.15 -7.29 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 6 N -0.91 -26.92 10.59 55.49 0.59 -26.33 16 7 Si 0.90 21.97 29.57 -169.99 -5.03 16.94 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.15 3.20 6.03 -4.04 -0.02 3.18 16 12 C 0.09 1.90 5.73 -4.04 -0.02 1.87 16 13 N -0.61 -9.92 2.87 -181.57 -0.52 -10.44 16 14 C 0.08 0.95 10.27 59.85 0.61 1.56 16 15 C 0.54 8.90 7.46 -10.98 -0.08 8.82 16 16 O -0.53 -10.88 14.72 5.56 0.08 -10.80 16 17 C -0.18 -2.16 5.29 -91.98 -0.49 -2.64 16 18 H 0.12 1.21 6.44 -51.93 -0.33 0.88 16 19 C -0.12 -1.28 10.23 -26.94 -0.28 -1.55 16 20 C -0.13 -1.46 2.87 -154.80 -0.45 -1.91 16 21 C -0.10 -0.89 8.10 -26.14 -0.21 -1.10 16 22 C -0.14 -1.31 8.08 -25.81 -0.21 -1.52 16 23 C -0.08 -1.01 6.47 -26.14 -0.17 -1.18 16 24 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 25 H 0.04 1.25 7.19 -51.93 -0.37 0.87 16 26 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.04 0.87 7.86 -51.93 -0.41 0.47 16 30 H 0.07 1.56 8.07 -51.93 -0.42 1.14 16 31 H 0.08 1.75 7.42 -51.93 -0.39 1.36 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.62 5.99 -51.93 -0.31 0.31 16 34 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -32.24 340.02 -8.50 -40.74 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.21 Total: -1.97 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.01 Total: 3.08 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.46 Total: -53.11 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.24 -8.50 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320053934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.225 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds