Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 120.00211 * 2 1 4 4 H 1.08000 * 120.00302 * 202.34668 * 3 2 1 5 5 C 1.38815 * 119.99584 * 22.35238 * 3 2 1 6 6 N 1.31615 * 120.00298 * 11.35014 * 5 3 2 7 7 Si 1.86798 * 119.99708 * 191.35324 * 5 3 2 8 8 H 1.48499 * 109.47396 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47298 * 119.99725 * 7 5 3 10 10 H 1.48499 * 109.47205 * 239.99708 * 7 5 3 11 11 C 1.46499 * 120.00058 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47233 * 269.99659 * 11 2 1 13 13 N 1.46499 * 109.47233 * 179.97438 * 12 11 2 14 14 C 1.46499 * 120.00058 * 90.00340 * 13 12 11 15 15 C 1.34781 * 119.99672 * 269.99461 * 13 12 11 16 16 O 1.21279 * 119.99955 * 0.02562 * 15 13 12 17 17 C 1.50704 * 119.99555 * 179.97438 * 15 13 12 18 18 H 1.08994 * 115.56373 * 325.74298 * 17 15 13 19 19 C 1.53124 * 117.50926 * 111.54549 * 17 15 13 20 20 C 1.52461 * 59.85821 * 107.44554 * 19 17 15 21 21 C 1.53255 * 128.58247 * 117.59786 * 20 19 17 22 22 C 1.53890 * 86.88059 * 114.94512 * 21 20 19 23 23 C 1.53254 * 128.57990 * 242.39727 * 20 19 17 24 24 H 1.09005 * 109.46423 * 274.20320 * 1 2 3 25 25 H 1.09002 * 109.47175 * 34.19995 * 1 2 3 26 26 H 1.08993 * 109.47159 * 154.20714 * 1 2 3 27 27 H 0.96994 * 119.99978 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47420 * 149.99535 * 11 2 1 29 29 H 1.09003 * 109.47334 * 29.99664 * 11 2 1 30 30 H 1.09003 * 109.46964 * 300.00231 * 12 11 2 31 31 H 1.09001 * 109.47019 * 59.99630 * 12 11 2 32 32 H 1.08996 * 109.47375 * 90.00020 * 14 13 12 33 33 H 1.09004 * 109.46833 * 209.99858 * 14 13 12 34 34 H 1.08997 * 109.46721 * 329.99560 * 14 13 12 35 35 H 1.09004 * 117.51513 * 214.89624 * 19 17 15 36 36 H 1.09007 * 117.51261 * 359.97438 * 19 17 15 37 37 H 1.09002 * 113.64532 * 229.44154 * 21 20 19 38 38 H 1.08993 * 113.64764 * 0.45102 * 21 20 19 39 39 H 1.09001 * 113.59140 * 270.38988 * 22 21 20 40 40 H 1.08998 * 113.66159 * 139.58120 * 22 21 20 41 41 H 1.08994 * 113.65004 * 359.55560 * 23 20 19 42 42 H 1.09007 * 113.64409 * 130.47278 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4572 6 7 0.3843 2.2690 1.0939 7 14 2.3366 4.0047 0.1687 8 1 3.6142 3.8167 -0.5645 9 1 1.4266 4.8615 -0.6332 10 1 2.6074 4.6571 1.4749 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 7 3.1846 -2.9800 1.4411 14 6 4.6496 -2.9806 1.4409 15 6 2.5101 -4.1469 1.4410 16 8 1.2973 -4.1464 1.4408 17 6 3.2631 -5.4524 1.4398 18 1 4.2017 -5.4534 0.8857 19 6 3.1853 -6.3149 2.7026 20 6 2.4436 -6.7381 1.4396 21 6 2.6432 -7.9985 0.5910 22 6 1.2212 -8.4070 1.0144 23 6 0.9354 -6.9102 1.2293 24 1 -0.3632 0.0753 1.0250 25 1 -0.3633 0.8500 -0.5776 26 1 -0.3633 -0.9252 -0.4471 27 1 -0.0462 3.0774 1.4130 28 1 3.1499 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5147 30 1 3.0417 -0.9515 1.9558 31 1 1.5002 -1.8415 1.9555 32 1 5.0130 -2.9812 2.4685 33 1 5.0124 -3.8706 0.9267 34 1 5.0131 -2.0907 0.9273 35 1 4.0731 -6.8834 2.9796 36 1 2.5898 -5.9377 3.5341 37 1 2.7408 -7.7965 -0.4757 38 1 3.4199 -8.6625 0.9703 39 1 1.1909 -8.9930 1.9329 40 1 0.6359 -8.8516 0.2096 41 1 0.3431 -6.7016 2.1201 42 1 0.5573 -6.4040 0.3410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320053934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = 23.890083 kcal Electronic energy + Delta-G solvation = -20602.371885 eV Core-core repulsion = 17584.422819 eV Total energy + Delta-G solvation = -3017.949066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41745 -39.57041 -37.77134 -36.34298 -34.63534 -33.40820 -30.40907 -28.03007 -27.49269 -26.56828 -26.13890 -24.01207 -23.79237 -22.27651 -20.10997 -19.10159 -18.83314 -18.14709 -17.23590 -16.90233 -16.30781 -16.07024 -15.71005 -15.61571 -15.44573 -14.70427 -14.40276 -14.09374 -13.83332 -13.59964 -13.25875 -13.21517 -13.12913 -12.90422 -12.79071 -12.75442 -12.51136 -12.40013 -12.24398 -12.06179 -11.96616 -11.65144 -11.24003 -10.99133 -10.72385 -10.70015 -10.55298 -9.74126 -8.81832 -7.85406 -5.35912 1.46655 1.47564 1.54965 1.58911 2.02182 2.50666 2.80746 3.29451 3.35012 3.68934 3.72225 3.78357 3.89856 3.97155 4.00757 4.18205 4.38038 4.43894 4.53173 4.60100 4.63857 4.74861 4.77563 4.82369 4.86994 4.90632 4.91590 4.95378 5.06964 5.11428 5.12686 5.18549 5.24462 5.42499 5.52567 5.54137 5.62159 5.63490 6.28350 6.50903 7.09355 7.25974 7.79266 8.26873 9.19400 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037967 B = 0.003901 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.311947 B = 7175.545500 C = 7590.773123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.617 5.617 3 C -0.266 4.266 4 H 0.079 0.921 5 C -0.054 4.054 6 N -0.942 5.942 7 Si 0.976 3.024 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.151 3.849 12 C 0.113 3.887 13 N -0.611 5.611 14 C 0.075 3.925 15 C 0.526 3.474 16 O -0.585 6.585 17 C -0.182 4.182 18 H 0.153 0.847 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.099 4.099 24 H 0.001 0.999 25 H 0.024 0.976 26 H 0.015 0.985 27 H 0.249 0.751 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.098 -20.837 0.876 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.340 5.340 3 C -0.396 4.396 4 H 0.097 0.903 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.804 3.196 8 H -0.185 1.185 9 H -0.219 1.219 10 H -0.218 1.218 11 C 0.024 3.976 12 C -0.012 4.012 13 N -0.343 5.343 14 C -0.067 4.067 15 C 0.316 3.684 16 O -0.465 6.465 17 C -0.202 4.202 18 H 0.170 0.830 19 C -0.142 4.142 20 C -0.140 4.140 21 C -0.121 4.121 22 C -0.169 4.169 23 C -0.137 4.137 24 H 0.019 0.981 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.389 -20.687 0.914 23.167 hybrid contribution -0.381 1.676 0.170 1.728 sum 10.007 -19.011 1.084 21.511 Atomic orbital electron populations 1.20497 0.82998 0.95468 0.97391 1.44172 1.02060 1.01745 1.86039 1.19650 0.98420 0.86131 1.35387 0.90323 1.25905 0.98358 1.02231 0.98430 1.70276 1.19415 1.27580 1.41567 0.85073 0.78138 0.79353 0.77072 1.18533 1.21939 1.21787 1.21107 0.95738 0.86462 0.94316 1.21945 0.95641 0.83900 0.99735 1.48052 1.08682 1.05108 1.72499 1.22068 0.76989 1.04529 1.03114 1.20475 0.87192 0.85576 0.75131 1.90671 1.16152 1.87907 1.51791 1.22241 1.02772 0.88227 1.06990 0.82957 1.22870 1.02629 0.99301 0.89393 1.22503 0.95589 0.94345 1.01581 1.22463 0.97757 0.92878 0.98985 1.22798 0.97081 0.94672 1.02302 1.22318 0.93733 0.97051 1.00597 0.98093 0.95713 0.96607 0.94222 0.92396 0.94952 0.91253 0.94355 0.91271 0.88227 0.90798 0.84047 0.89925 0.89414 0.88809 0.89024 0.90551 0.93592 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.00 9.01 127.77 1.15 11.15 16 2 N -0.62 -33.12 2.93 -726.94 -2.13 -35.25 16 3 C -0.27 -14.87 9.67 84.03 0.81 -14.06 16 4 H 0.08 4.16 7.84 -2.91 -0.02 4.13 16 5 C -0.05 -3.10 5.13 84.86 0.44 -2.66 16 6 N -0.94 -57.46 10.59 21.65 0.23 -57.23 16 7 Si 0.98 45.26 29.57 68.60 2.03 47.29 16 8 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 C 0.15 6.72 6.03 86.38 0.52 7.24 16 12 C 0.11 4.69 5.73 86.38 0.49 5.19 16 13 N -0.61 -19.43 2.87 -846.76 -2.43 -21.86 16 14 C 0.07 1.54 10.27 127.77 1.31 2.85 16 15 C 0.53 17.37 7.46 87.66 0.65 18.03 16 16 O -0.58 -24.98 14.72 -3.03 -0.04 -25.02 16 17 C -0.18 -3.98 5.29 -11.67 -0.06 -4.04 16 18 H 0.15 2.34 6.44 -2.39 -0.02 2.33 16 19 C -0.10 -1.88 10.23 30.46 0.31 -1.57 16 20 C -0.14 -2.90 2.87 -52.37 -0.15 -3.05 16 21 C -0.08 -1.23 8.10 30.98 0.25 -0.98 16 22 C -0.13 -2.18 8.08 31.19 0.25 -1.93 16 23 C -0.10 -2.51 6.47 30.98 0.20 -2.31 16 24 H 0.00 0.05 7.42 -2.38 -0.02 0.03 16 25 H 0.02 1.41 7.19 -2.39 -0.02 1.40 16 26 H 0.02 0.78 7.84 -2.39 -0.02 0.76 16 27 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 29 H 0.03 1.47 7.86 -2.39 -0.02 1.45 16 30 H 0.07 2.92 8.07 -2.39 -0.02 2.90 16 31 H 0.04 1.86 7.42 -2.39 -0.02 1.84 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.40 5.99 -2.38 -0.01 1.39 16 34 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.85 8.05 -2.38 -0.02 1.83 16 Total: -1.00 -73.13 340.02 4.81 -68.32 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.98 Total: 9.89 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.18 Total: 13.86 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.33 Total: -114.34 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.04 Total: -25.02 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.13 4.81 -68.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320053934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.211 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds