Wall clock time and date at job start Mon Mar 30 2020 00:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47099 * 2 1 4 4 C 1.46499 * 120.00379 * 264.01320 * 3 2 1 5 5 C 1.53002 * 109.46691 * 270.00318 * 4 3 2 6 6 N 1.46507 * 109.46953 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99716 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00349 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99783 * 179.97438 * 7 6 5 10 10 N 1.31620 * 120.00019 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99871 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46772 * 90.00509 * 11 9 7 13 13 H 1.48499 * 109.47018 * 209.99991 * 11 9 7 14 14 H 1.48498 * 109.47624 * 330.00756 * 11 9 7 15 15 C 1.34781 * 119.99849 * 84.00580 * 3 2 1 16 16 O 1.21288 * 119.99753 * 184.45948 * 15 3 2 17 17 C 1.50699 * 119.99872 * 4.46271 * 15 3 2 18 18 H 1.08993 * 109.64165 * 316.44978 * 17 15 3 19 19 C 1.53029 * 109.63971 * 76.86941 * 17 15 3 20 20 C 1.50071 * 110.03033 * 169.39900 * 19 17 15 21 21 C 1.29254 * 124.22304 * 342.64865 * 20 19 17 22 22 C 1.50062 * 124.01478 * 0.73103 * 21 20 19 23 23 C 1.53025 * 110.15014 * 342.73716 * 22 21 20 24 24 H 1.09002 * 109.46908 * 59.99963 * 1 2 3 25 25 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47522 * 300.00296 * 1 2 3 27 27 H 1.08995 * 109.47304 * 240.00209 * 2 1 3 28 28 H 1.08993 * 109.46843 * 119.99812 * 2 1 3 29 29 H 1.09002 * 109.47231 * 29.99479 * 4 3 2 30 30 H 1.08997 * 109.47920 * 149.99743 * 4 3 2 31 31 H 1.09002 * 109.47087 * 299.99344 * 5 4 3 32 32 H 1.08998 * 109.47871 * 59.99364 * 5 4 3 33 33 H 0.96997 * 120.00187 * 359.97438 * 6 5 4 34 34 H 0.96991 * 120.00131 * 179.97438 * 10 9 7 35 35 H 1.08991 * 109.35716 * 289.53653 * 19 17 15 36 36 H 1.08998 * 109.35395 * 49.26574 * 19 17 15 37 37 H 1.08004 * 117.95556 * 162.78298 * 20 19 17 38 38 H 1.07995 * 118.02077 * 180.58020 * 21 20 19 39 39 H 1.09004 * 109.35757 * 222.52940 * 22 21 20 40 40 H 1.09001 * 109.36009 * 102.94646 * 22 21 20 41 41 H 1.08996 * 109.64089 * 289.74990 * 23 22 21 42 42 H 1.09001 * 109.81437 * 169.22529 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3873 2.0278 -1.2618 5 6 3.8683 1.7746 -1.5505 6 7 4.2372 2.4206 -2.8126 7 6 5.5217 2.3299 -3.2783 8 1 6.2630 1.7824 -2.7151 9 6 5.8711 2.9416 -4.4745 10 7 7.1059 2.8549 -4.9219 11 14 4.5889 3.8878 -5.4490 12 1 4.5832 5.3072 -5.0121 13 1 4.9150 3.8167 -6.8960 14 1 3.2491 3.2922 -5.2136 15 6 2.1280 2.0572 1.1609 16 8 2.4547 3.2252 1.1539 17 6 1.8449 1.3617 2.4674 18 1 0.9457 0.7532 2.3713 19 6 3.0310 0.4708 2.8434 20 6 2.8774 -0.0219 4.2526 21 6 2.0815 0.5049 5.1242 22 6 1.1859 1.6758 4.8436 23 6 1.6478 2.4013 3.5779 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7839 1.6163 -2.0709 30 1 2.2101 3.1006 -1.1858 31 1 4.4718 2.1860 -0.7414 32 1 4.0455 0.7018 -1.6265 33 1 3.5716 2.9126 -3.3183 34 1 7.3499 3.2819 -5.7578 35 1 3.0721 -0.3814 2.1652 36 1 3.9542 1.0441 2.7598 37 1 3.4713 -0.8700 4.5600 38 1 2.0574 0.0748 6.1145 39 1 1.2177 2.3654 5.6872 40 1 0.1636 1.3239 4.7056 41 1 2.5903 2.9131 3.7722 42 1 0.8937 3.1262 3.2715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320673759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:04 Heat of formation + Delta-G solvation = -15.888960 kcal Electronic energy + Delta-G solvation = -20681.643077 eV Core-core repulsion = 17661.969063 eV Total energy + Delta-G solvation = -3019.674015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47245 -37.92716 -36.22967 -34.77434 -32.10223 -31.26228 -30.98266 -30.52374 -27.92557 -24.56605 -23.76928 -23.28474 -22.32709 -21.25736 -19.01682 -18.16401 -17.56819 -17.10869 -16.45923 -15.74722 -15.18509 -14.39214 -14.34108 -13.96601 -13.93204 -13.74913 -13.52809 -13.43639 -13.26656 -12.75533 -12.62349 -12.44957 -12.36578 -12.06568 -11.53298 -11.36718 -11.13996 -11.08465 -11.00929 -10.86566 -10.70489 -10.56024 -10.15428 -9.59505 -9.52771 -9.22755 -8.87675 -8.55541 -7.22475 -5.74627 -3.10686 2.06236 2.70380 3.02556 3.39405 3.43370 3.47537 4.30130 4.47715 4.60705 4.61562 4.73456 4.87636 5.01110 5.06065 5.07886 5.16956 5.26068 5.31792 5.41850 5.44812 5.49457 5.57159 5.61154 5.64537 5.67778 5.75223 5.78506 5.79174 5.98059 5.99117 6.02148 6.15192 6.40980 6.50388 6.66031 6.71032 6.84017 7.48775 8.00596 8.29105 8.43821 9.22385 9.94635 10.14071 11.43782 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.004104 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.419089 B = 6820.427684 C = 7045.568144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.607 5.607 4 C 0.103 3.897 5 C 0.147 3.853 6 N -0.754 5.754 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.517 3.483 16 O -0.532 6.532 17 C -0.107 4.107 18 H 0.095 0.905 19 C -0.084 4.084 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.091 4.091 23 C -0.101 4.101 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 -8.359 18.587 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.341 5.341 4 C -0.020 4.020 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.305 3.695 16 O -0.408 6.408 17 C -0.128 4.128 18 H 0.113 0.887 19 C -0.121 4.121 20 C -0.168 4.168 21 C -0.176 4.176 22 C -0.128 4.128 23 C -0.139 4.139 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.895 -7.795 18.560 25.649 hybrid contribution -0.756 0.493 -0.845 1.237 sum -16.651 -7.301 17.715 25.385 Atomic orbital electron populations 1.22251 0.96006 1.02250 1.02532 1.21701 0.94250 0.82736 1.03809 1.47914 1.65116 1.14114 1.06916 1.21714 0.97010 0.99181 0.84077 1.20889 0.91898 0.96123 0.89175 1.42565 1.09964 1.64480 1.22973 1.19035 0.85773 1.28533 1.03947 0.89257 1.24668 0.96122 1.00530 0.97815 1.69701 1.16793 1.49000 1.22744 0.86523 0.81492 0.80552 0.79819 1.20965 1.21684 1.20358 1.20599 0.76917 0.86832 0.85176 1.90719 1.46679 1.16333 1.87095 1.21432 1.00422 0.98197 0.92763 0.88725 1.20463 0.97910 0.98927 0.94773 1.21950 0.99646 1.00183 0.95032 1.22015 0.98484 0.98042 0.99034 1.20485 0.98553 0.95765 0.98025 1.21433 1.02931 0.96605 0.92907 0.92097 0.91423 0.92539 0.89603 0.90188 0.90699 0.89801 0.95225 0.95617 0.80671 0.93040 0.90151 0.89897 0.87596 0.87920 0.90762 0.90930 0.90730 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.03 37.16 0.37 -1.02 16 2 C 0.10 0.95 5.77 -4.04 -0.02 0.93 16 3 N -0.61 -8.26 2.49 -173.69 -0.43 -8.69 16 4 C 0.10 1.70 5.53 -4.04 -0.02 1.68 16 5 C 0.15 3.03 6.58 -4.04 -0.03 3.00 16 6 N -0.75 -18.77 5.41 -59.90 -0.32 -19.10 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -29.98 13.97 55.49 0.78 -29.20 16 11 Si 0.89 22.61 27.73 -169.99 -4.71 17.90 16 12 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 15 C 0.52 7.56 6.81 -10.98 -0.07 7.48 16 16 O -0.53 -10.10 15.71 5.55 0.09 -10.02 16 17 C -0.11 -1.14 1.71 -91.56 -0.16 -1.30 16 18 H 0.09 0.84 5.89 -51.93 -0.31 0.53 16 19 C -0.08 -0.83 5.23 -28.17 -0.15 -0.98 16 20 C -0.15 -1.28 9.78 -35.85 -0.35 -1.64 16 21 C -0.16 -1.27 9.80 -35.86 -0.35 -1.62 16 22 C -0.09 -0.73 6.11 -28.18 -0.17 -0.90 16 23 C -0.10 -1.06 4.64 -26.52 -0.12 -1.19 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.45 6.83 -51.93 -0.35 0.10 16 27 H 0.09 0.83 8.03 -51.93 -0.42 0.42 16 28 H 0.08 0.65 4.84 -51.93 -0.25 0.40 16 29 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.08 1.53 7.37 -51.93 -0.38 1.15 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.36 8.67 5.53 -40.82 -0.23 8.45 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.56 16 35 H 0.08 0.70 6.13 -51.93 -0.32 0.39 16 36 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.11 0.78 8.06 -52.48 -0.42 0.35 16 38 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.91 8.12 -51.93 -0.42 0.48 16 42 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -34.44 332.38 -7.84 -42.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.91 Total: 4.63 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.33 Total: -2.81 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.02 Total: -56.99 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.44 -7.84 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320673759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.393 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds