Wall clock time and date at job start Mon Mar 30 2020 00:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47099 * 2 1 4 4 C 1.46499 * 120.00379 * 264.01320 * 3 2 1 5 5 C 1.53002 * 109.46691 * 270.00318 * 4 3 2 6 6 N 1.46507 * 109.46953 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99716 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00349 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99783 * 179.97438 * 7 6 5 10 10 N 1.31620 * 120.00019 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99871 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46772 * 90.00509 * 11 9 7 13 13 H 1.48499 * 109.47018 * 209.99991 * 11 9 7 14 14 H 1.48498 * 109.47624 * 330.00756 * 11 9 7 15 15 C 1.34781 * 119.99849 * 84.00580 * 3 2 1 16 16 O 1.21288 * 119.99753 * 184.45948 * 15 3 2 17 17 C 1.50699 * 119.99872 * 4.46271 * 15 3 2 18 18 H 1.08993 * 109.64165 * 316.44978 * 17 15 3 19 19 C 1.53029 * 109.63971 * 76.86941 * 17 15 3 20 20 C 1.50071 * 110.03033 * 169.39900 * 19 17 15 21 21 C 1.29254 * 124.22304 * 342.64865 * 20 19 17 22 22 C 1.50062 * 124.01478 * 0.73103 * 21 20 19 23 23 C 1.53025 * 110.15014 * 342.73716 * 22 21 20 24 24 H 1.09002 * 109.46908 * 59.99963 * 1 2 3 25 25 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47522 * 300.00296 * 1 2 3 27 27 H 1.08995 * 109.47304 * 240.00209 * 2 1 3 28 28 H 1.08993 * 109.46843 * 119.99812 * 2 1 3 29 29 H 1.09002 * 109.47231 * 29.99479 * 4 3 2 30 30 H 1.08997 * 109.47920 * 149.99743 * 4 3 2 31 31 H 1.09002 * 109.47087 * 299.99344 * 5 4 3 32 32 H 1.08998 * 109.47871 * 59.99364 * 5 4 3 33 33 H 0.96997 * 120.00187 * 359.97438 * 6 5 4 34 34 H 0.96991 * 120.00131 * 179.97438 * 10 9 7 35 35 H 1.08991 * 109.35716 * 289.53653 * 19 17 15 36 36 H 1.08998 * 109.35395 * 49.26574 * 19 17 15 37 37 H 1.08004 * 117.95556 * 162.78298 * 20 19 17 38 38 H 1.07995 * 118.02077 * 180.58020 * 21 20 19 39 39 H 1.09004 * 109.35757 * 222.52940 * 22 21 20 40 40 H 1.09001 * 109.36009 * 102.94646 * 22 21 20 41 41 H 1.08996 * 109.64089 * 289.74990 * 23 22 21 42 42 H 1.09001 * 109.81437 * 169.22529 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3873 2.0278 -1.2618 5 6 3.8683 1.7746 -1.5505 6 7 4.2372 2.4206 -2.8126 7 6 5.5217 2.3299 -3.2783 8 1 6.2630 1.7824 -2.7151 9 6 5.8711 2.9416 -4.4745 10 7 7.1059 2.8549 -4.9219 11 14 4.5889 3.8878 -5.4490 12 1 4.5832 5.3072 -5.0121 13 1 4.9150 3.8167 -6.8960 14 1 3.2491 3.2922 -5.2136 15 6 2.1280 2.0572 1.1609 16 8 2.4547 3.2252 1.1539 17 6 1.8449 1.3617 2.4674 18 1 0.9457 0.7532 2.3713 19 6 3.0310 0.4708 2.8434 20 6 2.8774 -0.0219 4.2526 21 6 2.0815 0.5049 5.1242 22 6 1.1859 1.6758 4.8436 23 6 1.6478 2.4013 3.5779 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7839 1.6163 -2.0709 30 1 2.2101 3.1006 -1.1858 31 1 4.4718 2.1860 -0.7414 32 1 4.0455 0.7018 -1.6265 33 1 3.5716 2.9126 -3.3183 34 1 7.3499 3.2819 -5.7578 35 1 3.0721 -0.3814 2.1652 36 1 3.9542 1.0441 2.7598 37 1 3.4713 -0.8700 4.5600 38 1 2.0574 0.0748 6.1145 39 1 1.2177 2.3654 5.6872 40 1 0.1636 1.3239 4.7056 41 1 2.5903 2.9131 3.7722 42 1 0.8937 3.1262 3.2715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320673759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:04 Heat of formation + Delta-G solvation = -38.202044 kcal Electronic energy + Delta-G solvation = -20682.610645 eV Core-core repulsion = 17661.969063 eV Total energy + Delta-G solvation = -3020.641583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53595 -38.81217 -37.56567 -36.50710 -33.89565 -32.42326 -31.75134 -31.62042 -29.43972 -25.94486 -24.92235 -24.04626 -23.72590 -22.77314 -20.26956 -19.54089 -18.91313 -18.10919 -17.49744 -16.90494 -16.35512 -16.25446 -15.60450 -15.43225 -15.04591 -14.89445 -14.69241 -14.48660 -14.32192 -14.05501 -13.62843 -13.49021 -13.26249 -13.13974 -13.03907 -12.86901 -12.71183 -12.39531 -12.12068 -11.99115 -11.87545 -11.85508 -11.66004 -11.33310 -11.04709 -10.66851 -9.87330 -9.73998 -9.39728 -8.07664 -5.43665 1.35213 1.40730 1.42627 1.47212 1.56970 1.93238 2.45161 3.23323 3.38949 3.68930 3.70933 3.81308 3.96429 4.09389 4.12007 4.21921 4.27970 4.38202 4.40168 4.43234 4.50975 4.54622 4.62292 4.73183 4.84339 4.90310 4.90904 5.01739 5.03760 5.07453 5.09431 5.24903 5.32517 5.38699 5.54135 5.68810 5.78340 6.07250 6.15226 6.39705 7.00433 7.15111 7.73870 7.95250 9.13693 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.004104 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.419089 B = 6820.427684 C = 7045.568144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 N -0.605 5.605 4 C 0.116 3.884 5 C 0.151 3.849 6 N -0.755 5.755 7 C -0.243 4.243 8 H 0.052 0.948 9 C -0.061 4.061 10 N -0.982 5.982 11 Si 0.959 3.041 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.246 1.246 15 C 0.510 3.490 16 O -0.586 6.586 17 C -0.097 4.097 18 H 0.123 0.877 19 C -0.082 4.082 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.088 4.088 23 C -0.102 4.102 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.001 0.999 32 H 0.035 0.965 33 H 0.368 0.632 34 H 0.260 0.740 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 -9.763 19.402 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.336 5.336 4 C -0.008 4.008 5 C 0.024 3.976 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.070 0.930 9 C -0.253 4.253 10 N -0.632 5.632 11 Si 0.785 3.215 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.170 1.170 15 C 0.300 3.700 16 O -0.466 6.466 17 C -0.118 4.118 18 H 0.140 0.860 19 C -0.119 4.119 20 C -0.179 4.179 21 C -0.171 4.171 22 C -0.125 4.125 23 C -0.140 4.140 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.202 0.798 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.039 -9.255 19.410 28.721 hybrid contribution 0.288 0.890 -1.019 1.383 sum -18.750 -8.365 18.392 27.565 Atomic orbital electron populations 1.22208 0.94190 1.03806 1.02240 1.22035 0.95694 0.80336 1.05031 1.48037 1.64435 1.15579 1.05598 1.21402 0.94309 0.98732 0.86387 1.20950 0.94432 0.95785 0.86458 1.42518 1.08474 1.64894 1.24270 1.18984 0.87032 1.27685 1.03711 0.92961 1.25565 0.98576 1.01974 0.99144 1.69885 1.19357 1.50481 1.23440 0.85358 0.79827 0.78701 0.77613 1.20760 1.21525 1.16976 1.21396 0.75690 0.86373 0.86580 1.90691 1.49128 1.18845 1.87895 1.21452 1.01808 0.98221 0.90326 0.85957 1.20440 0.96226 0.98746 0.96526 1.21968 1.00684 1.01149 0.94146 1.22227 0.97742 0.97446 0.99714 1.20504 0.99472 0.95787 0.96691 1.21426 1.01491 0.96711 0.94412 0.92983 0.88891 0.92283 0.89203 0.88249 0.88143 0.91705 0.98064 0.94717 0.79840 0.93073 0.88862 0.92686 0.86181 0.85908 0.89759 0.88994 0.93335 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.03 71.98 0.72 -1.39 16 2 C 0.09 1.51 5.77 86.38 0.50 2.01 16 3 N -0.60 -15.80 2.49 -821.81 -2.04 -17.84 16 4 C 0.12 3.73 5.53 86.38 0.48 4.21 16 5 C 0.15 6.27 6.58 86.38 0.57 6.84 16 6 N -0.76 -37.56 5.41 -343.43 -1.86 -39.41 16 7 C -0.24 -14.64 10.47 84.03 0.88 -13.76 16 8 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 9 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 10 N -0.98 -64.48 13.97 21.65 0.30 -64.18 16 11 Si 0.96 46.46 27.73 68.60 1.90 48.36 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 15 C 0.51 14.89 6.81 87.66 0.60 15.48 16 16 O -0.59 -23.14 15.71 -3.05 -0.05 -23.19 16 17 C -0.10 -1.96 1.71 -11.40 -0.02 -1.98 16 18 H 0.12 1.79 5.89 -2.39 -0.01 1.78 16 19 C -0.08 -1.54 5.23 29.66 0.16 -1.39 16 20 C -0.16 -2.41 9.78 27.22 0.27 -2.15 16 21 C -0.15 -2.03 9.80 27.22 0.27 -1.77 16 22 C -0.09 -1.19 6.11 29.66 0.18 -1.01 16 23 C -0.10 -2.11 4.64 30.73 0.14 -1.96 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.73 6.83 -2.39 -0.02 0.71 16 27 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 28 H 0.10 1.29 4.84 -2.39 -0.01 1.28 16 29 H 0.10 2.74 8.07 -2.39 -0.02 2.72 16 30 H 0.06 2.37 7.37 -2.39 -0.02 2.35 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.37 17.13 5.53 -92.71 -0.51 16.62 16 34 H 0.26 16.16 8.31 -92.71 -0.77 15.38 16 35 H 0.09 1.45 6.13 -2.39 -0.01 1.44 16 36 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.12 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.12 1.19 8.06 -2.91 -0.02 1.16 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 42 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 Total: -1.00 -77.66 332.38 3.88 -73.78 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.42 Total: 22.59 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.20 Total: -0.09 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -3.60 Total: -121.44 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Total: -77.66 3.88 -73.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320673759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.575 kcal (2) G-P(sol) polarization free energy of solvation -77.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds