Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48941 * 111.37711 * 2 1 4 4 C 1.50362 * 105.16902 * 114.20620 * 3 2 1 5 5 H 1.08992 * 110.05134 * 279.66174 * 4 3 2 6 6 C 1.51017 * 125.47819 * 144.54916 * 4 3 2 7 7 C 1.56401 * 101.60209 * 204.50766 * 6 4 3 8 8 C 1.55938 * 105.79296 * 25.00756 * 7 6 4 9 9 H 1.09002 * 110.49359 * 248.71359 * 8 7 6 10 10 N 1.46496 * 110.49343 * 126.19033 * 8 7 6 11 11 C 1.34777 * 120.00271 * 86.44903 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 C 1.53000 * 109.46912 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00636 * 19 17 15 21 21 H 1.48494 * 109.47178 * 210.00332 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00579 * 19 17 15 23 23 C 1.50304 * 104.15962 * 7.51998 * 8 7 6 24 24 H 1.09004 * 109.98958 * 80.52155 * 23 8 7 25 25 C 1.50103 * 111.00157 * 119.91771 * 2 1 3 26 26 H 1.08996 * 109.47059 * 300.08380 * 1 2 3 27 27 H 1.08997 * 109.47193 * 60.08544 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.08154 * 1 2 3 29 29 H 1.08997 * 110.06263 * 355.32952 * 3 2 1 30 30 H 1.09003 * 110.34438 * 233.23041 * 3 2 1 31 31 H 1.09005 * 110.99721 * 86.43622 * 6 4 3 32 32 H 1.08991 * 111.03750 * 322.60358 * 6 4 3 33 33 H 1.08999 * 110.18661 * 265.92668 * 7 6 4 34 34 H 1.08997 * 110.18523 * 144.09011 * 7 6 4 35 35 H 0.97005 * 120.00266 * 266.45486 * 10 8 7 36 36 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 37 37 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 38 38 H 1.09001 * 109.47194 * 299.99742 * 14 13 11 39 39 H 1.08992 * 109.47399 * 59.99914 * 14 13 11 40 40 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.85228 * 94.96036 * 25 2 1 42 42 H 1.08996 * 110.85091 * 331.32886 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0119 1.3869 0.0000 4 6 2.7094 1.5364 1.3236 5 1 1.9822 1.7480 2.1075 6 6 3.9741 2.3260 1.5637 7 6 4.5464 1.6234 2.8384 8 6 3.9635 0.1771 2.8237 9 1 3.2494 0.0452 3.6366 10 7 5.0404 -0.8110 2.9234 11 6 5.4981 -1.1892 4.1334 12 8 5.0181 -0.7118 5.1396 13 6 6.6063 -2.2053 4.2359 14 6 6.9341 -2.4554 5.7093 15 6 8.0419 -3.4720 5.8119 16 1 8.4696 -3.8968 4.9158 17 6 8.5100 -3.8590 7.0497 18 7 7.9894 -3.3413 8.1408 19 14 9.8827 -5.1195 7.1768 20 1 11.1950 -4.4243 7.1737 21 1 9.7331 -5.8887 8.4382 22 1 9.8113 -6.0475 6.0197 23 6 3.2745 0.0720 1.4920 24 1 4.0047 -0.1364 0.7100 25 6 2.0069 -0.6989 1.2146 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5125 -0.8907 28 1 -0.3634 -1.0277 0.0015 29 1 1.1980 2.1071 -0.0834 30 1 2.7197 1.5168 -0.8187 31 1 3.7486 3.3736 1.7632 32 1 4.6610 2.2296 0.7229 33 1 4.2225 2.1504 3.7358 34 1 5.6350 1.5906 2.7931 35 1 5.4242 -1.1931 2.1186 36 1 7.4926 -1.8291 3.7250 37 1 6.2878 -3.1385 3.7713 38 1 7.2525 -1.5224 6.1742 39 1 6.0477 -2.8318 6.2199 40 1 8.3190 -3.6133 9.0117 41 1 2.2282 -1.7434 0.9951 42 1 1.3117 -0.6157 2.0499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349692647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = -33.526413 kcal Electronic energy + Delta-G solvation = -20312.883372 eV Core-core repulsion = 17292.444540 eV Total energy + Delta-G solvation = -3020.438832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90181 -38.84821 -36.10914 -33.44162 -33.36804 -31.01355 -30.28852 -29.46009 -26.46815 -25.28662 -25.05249 -21.96360 -21.36730 -20.69489 -19.85013 -19.36340 -16.91270 -16.78260 -15.86464 -15.60113 -15.13415 -14.98897 -14.63587 -14.43040 -14.13589 -13.69007 -13.46596 -13.10741 -12.84922 -12.52818 -12.24735 -12.06153 -11.89723 -11.70864 -11.57028 -11.19682 -11.12305 -10.93081 -10.91494 -10.76801 -10.58591 -10.35486 -9.93325 -9.64014 -9.14908 -8.97186 -8.78216 -8.64027 -8.30413 -5.94594 -3.98891 3.27585 3.34351 3.40080 3.42674 3.49587 3.59252 3.78265 4.46520 4.49591 4.58924 4.76477 4.95897 4.99476 5.07996 5.13978 5.21802 5.28228 5.35421 5.40301 5.42882 5.45532 5.56002 5.57713 5.66956 5.68997 5.80712 5.87216 6.00711 6.15472 6.18242 6.26153 6.28070 6.47111 6.69191 6.82852 6.92540 7.76208 7.88576 7.93940 8.09133 8.40779 8.82634 9.09972 9.64561 11.16368 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040057 B = 0.003279 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.838075 B = 8537.174911 C = 8817.490209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.056 3.944 4 C -0.131 4.131 5 H 0.075 0.925 6 C -0.100 4.100 7 C -0.132 4.132 8 C 0.162 3.838 9 H 0.088 0.912 10 N -0.738 5.738 11 C 0.510 3.490 12 O -0.535 6.535 13 C -0.131 4.131 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.122 4.122 24 H 0.089 0.911 25 C 0.054 3.946 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.086 0.914 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 10.025 -18.364 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.257 5.257 3 C -0.071 4.071 4 C -0.151 4.151 5 H 0.093 0.907 6 C -0.139 4.139 7 C -0.171 4.171 8 C 0.056 3.944 9 H 0.106 0.894 10 N -0.391 5.391 11 C 0.298 3.702 12 O -0.410 6.410 13 C -0.171 4.171 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.142 4.142 24 H 0.107 0.893 25 C -0.073 4.073 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.813 10.078 -17.878 24.195 hybrid contribution 0.584 -0.432 0.495 0.880 sum -12.229 9.645 -17.383 23.340 Atomic orbital electron populations 1.22527 0.87808 1.02193 1.00531 1.64889 1.08009 1.13970 1.38782 1.22028 0.98858 0.89435 0.96829 1.22434 0.97760 0.96530 0.98385 0.90655 1.21756 0.95287 0.98636 0.98173 1.23408 1.01336 0.94743 0.97651 1.20710 0.89165 0.88200 0.96361 0.89364 1.46338 1.39003 1.44747 1.09039 1.21568 0.83869 0.82443 0.82274 1.90661 1.58719 1.55823 1.35808 1.21868 0.94749 0.96024 1.04418 1.18890 0.96756 0.97191 0.87193 1.21234 1.19001 1.23995 0.92270 0.92618 1.25028 0.96899 0.96580 0.95911 1.69998 1.42012 1.43275 0.97593 0.86593 0.82380 0.81507 0.77474 1.20688 1.21236 1.19877 1.22368 0.97472 0.96162 0.98188 0.89311 1.22402 0.94876 0.98724 0.91262 0.95491 0.91369 0.91224 0.92145 0.90109 0.91410 0.91067 0.90969 0.90791 0.76902 0.90303 0.90285 0.95875 0.95862 0.92972 0.89611 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.25 60.06 0.56 0.69 16 2 N -0.53 -4.90 5.54 -241.20 -1.34 -6.23 16 3 C 0.06 0.45 6.69 -4.01 -0.03 0.43 16 4 C -0.13 -1.15 2.80 -90.26 -0.25 -1.40 16 5 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.10 -0.86 6.72 -25.90 -0.17 -1.04 16 7 C -0.13 -1.52 6.73 -23.33 -0.16 -1.68 16 8 C 0.16 2.02 3.05 -67.71 -0.21 1.81 16 9 H 0.09 1.30 7.67 -51.93 -0.40 0.91 16 10 N -0.74 -10.28 5.07 -53.59 -0.27 -10.56 16 11 C 0.51 9.79 7.83 -10.98 -0.09 9.71 16 12 O -0.53 -12.62 15.69 5.56 0.09 -12.53 16 13 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 14 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 15 C -0.53 -15.06 9.11 -34.44 -0.31 -15.38 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.12 -1.20 2.38 -90.34 -0.22 -1.42 16 24 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 25 C 0.05 0.53 6.57 -3.07 -0.02 0.51 16 26 H 0.03 0.20 8.11 -51.93 -0.42 -0.22 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.44 7.64 -51.93 -0.40 0.04 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 35 H 0.40 4.43 8.45 -40.82 -0.34 4.08 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.53 7.86 -51.93 -0.41 0.12 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -33.43 336.23 -9.41 -42.85 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.40 Total: -0.36 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.27 Total: -8.11 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.87 Total: -43.69 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.43 -9.41 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349692647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.319 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds