Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48941 * 111.37711 * 2 1 4 4 C 1.50362 * 105.16902 * 114.20620 * 3 2 1 5 5 H 1.08992 * 110.05134 * 279.66174 * 4 3 2 6 6 C 1.51017 * 125.47819 * 144.54916 * 4 3 2 7 7 C 1.56401 * 101.60209 * 204.50766 * 6 4 3 8 8 C 1.55938 * 105.79296 * 25.00756 * 7 6 4 9 9 H 1.09002 * 110.49359 * 248.71359 * 8 7 6 10 10 N 1.46496 * 110.49343 * 126.19033 * 8 7 6 11 11 C 1.34777 * 120.00271 * 86.44903 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 C 1.53000 * 109.46912 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00636 * 19 17 15 21 21 H 1.48494 * 109.47178 * 210.00332 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00579 * 19 17 15 23 23 C 1.50304 * 104.15962 * 7.51998 * 8 7 6 24 24 H 1.09004 * 109.98958 * 80.52155 * 23 8 7 25 25 C 1.50103 * 111.00157 * 119.91771 * 2 1 3 26 26 H 1.08996 * 109.47059 * 300.08380 * 1 2 3 27 27 H 1.08997 * 109.47193 * 60.08544 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.08154 * 1 2 3 29 29 H 1.08997 * 110.06263 * 355.32952 * 3 2 1 30 30 H 1.09003 * 110.34438 * 233.23041 * 3 2 1 31 31 H 1.09005 * 110.99721 * 86.43622 * 6 4 3 32 32 H 1.08991 * 111.03750 * 322.60358 * 6 4 3 33 33 H 1.08999 * 110.18661 * 265.92668 * 7 6 4 34 34 H 1.08997 * 110.18523 * 144.09011 * 7 6 4 35 35 H 0.97005 * 120.00266 * 266.45486 * 10 8 7 36 36 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 37 37 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 38 38 H 1.09001 * 109.47194 * 299.99742 * 14 13 11 39 39 H 1.08992 * 109.47399 * 59.99914 * 14 13 11 40 40 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.85228 * 94.96036 * 25 2 1 42 42 H 1.08996 * 110.85091 * 331.32886 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0119 1.3869 0.0000 4 6 2.7094 1.5364 1.3236 5 1 1.9822 1.7480 2.1075 6 6 3.9741 2.3260 1.5637 7 6 4.5464 1.6234 2.8384 8 6 3.9635 0.1771 2.8237 9 1 3.2494 0.0452 3.6366 10 7 5.0404 -0.8110 2.9234 11 6 5.4981 -1.1892 4.1334 12 8 5.0181 -0.7118 5.1396 13 6 6.6063 -2.2053 4.2359 14 6 6.9341 -2.4554 5.7093 15 6 8.0419 -3.4720 5.8119 16 1 8.4696 -3.8968 4.9158 17 6 8.5100 -3.8590 7.0497 18 7 7.9894 -3.3413 8.1408 19 14 9.8827 -5.1195 7.1768 20 1 11.1950 -4.4243 7.1737 21 1 9.7331 -5.8887 8.4382 22 1 9.8113 -6.0475 6.0197 23 6 3.2745 0.0720 1.4920 24 1 4.0047 -0.1364 0.7100 25 6 2.0069 -0.6989 1.2146 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5125 -0.8907 28 1 -0.3634 -1.0277 0.0015 29 1 1.1980 2.1071 -0.0834 30 1 2.7197 1.5168 -0.8187 31 1 3.7486 3.3736 1.7632 32 1 4.6610 2.2296 0.7229 33 1 4.2225 2.1504 3.7358 34 1 5.6350 1.5906 2.7931 35 1 5.4242 -1.1931 2.1186 36 1 7.4926 -1.8291 3.7250 37 1 6.2878 -3.1385 3.7713 38 1 7.2525 -1.5224 6.1742 39 1 6.0477 -2.8318 6.2199 40 1 8.3190 -3.6133 9.0117 41 1 2.2282 -1.7434 0.9951 42 1 1.3117 -0.6157 2.0499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349692647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = -57.593683 kcal Electronic energy + Delta-G solvation = -20313.927007 eV Core-core repulsion = 17292.444540 eV Total energy + Delta-G solvation = -3021.482467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80103 -40.28232 -37.07284 -35.55276 -34.59425 -32.95642 -31.07725 -30.39927 -28.00203 -26.49784 -25.99302 -23.70259 -22.34600 -21.61079 -20.93331 -20.63357 -18.79592 -17.77970 -17.46963 -16.70717 -16.40187 -16.38328 -15.91841 -15.78211 -15.01391 -14.81119 -14.44818 -14.27210 -14.16634 -13.89258 -13.81748 -13.23311 -12.94216 -12.85843 -12.77935 -12.55753 -12.46881 -12.34760 -11.95542 -11.91392 -11.70438 -11.65136 -11.62114 -11.30076 -11.16877 -10.66581 -10.56977 -10.03784 -9.36122 -8.17952 -6.32091 1.42133 1.45003 1.55991 1.72810 2.24594 2.44966 2.83794 2.98258 3.14966 3.70027 3.75333 3.94465 4.14964 4.20340 4.22059 4.32764 4.39977 4.49365 4.50660 4.51788 4.56726 4.61469 4.63984 4.68540 4.83528 4.96017 4.99990 5.05975 5.07373 5.10974 5.16673 5.20111 5.40198 5.49076 5.62124 5.63719 5.78568 5.85838 6.03873 6.17966 6.64031 6.86615 7.36994 7.39037 8.94760 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040057 B = 0.003279 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.838075 B = 8537.174911 C = 8817.490209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.121 4.121 5 H 0.065 0.935 6 C -0.087 4.087 7 C -0.133 4.133 8 C 0.158 3.842 9 H 0.060 0.940 10 N -0.712 5.712 11 C 0.512 3.488 12 O -0.589 6.589 13 C -0.120 4.120 14 C 0.043 3.957 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.255 1.255 23 C -0.118 4.118 24 H 0.101 0.899 25 C 0.054 3.946 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.416 0.584 36 H 0.104 0.896 37 H 0.103 0.897 38 H -0.019 1.019 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.084 0.916 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.949 9.722 -21.426 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.264 5.264 3 C -0.069 4.069 4 C -0.141 4.141 5 H 0.084 0.916 6 C -0.125 4.125 7 C -0.172 4.172 8 C 0.053 3.947 9 H 0.078 0.922 10 N -0.365 5.365 11 C 0.300 3.700 12 O -0.469 6.469 13 C -0.160 4.160 14 C 0.005 3.995 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.179 1.179 23 C -0.137 4.137 24 H 0.119 0.881 25 C -0.073 4.073 26 H 0.044 0.956 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.253 0.747 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.000 1.000 39 H -0.001 1.001 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.170 9.779 -21.027 26.189 hybrid contribution 0.313 -0.302 1.446 1.510 sum -11.857 9.478 -19.581 24.776 Atomic orbital electron populations 1.22580 0.86959 1.02530 1.01110 1.64907 1.08922 1.14574 1.38025 1.22069 0.99337 0.89143 0.96330 1.22391 0.97573 0.95362 0.98753 0.91613 1.21691 0.95137 0.98904 0.96807 1.23371 1.00876 0.94084 0.98898 1.20808 0.88337 0.88437 0.97121 0.92199 1.46048 1.38409 1.44043 1.07981 1.21329 0.83525 0.82069 0.83034 1.90649 1.60481 1.57789 1.37984 1.21642 0.96474 0.97870 0.99980 1.18679 0.94828 0.94866 0.91134 1.21727 1.19140 1.24048 0.93178 0.90587 1.26153 0.99919 0.99003 0.95456 1.70179 1.44048 1.45215 0.98390 0.85312 0.78476 0.78487 0.77914 1.19674 1.21204 1.17861 1.22251 0.97669 0.97424 0.96359 0.88115 1.22378 0.94650 0.98850 0.91463 0.95595 0.90046 0.91123 0.90955 0.89167 0.90100 0.89482 0.92489 0.91525 0.74697 0.87749 0.87851 1.00018 1.00059 0.92869 0.89724 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.25 127.69 1.18 1.41 16 2 N -0.54 -8.74 5.54 -917.03 -5.08 -13.82 16 3 C 0.06 0.78 6.69 85.05 0.57 1.35 16 4 C -0.12 -1.87 2.80 -10.56 -0.03 -1.90 16 5 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 6 C -0.09 -1.30 6.72 31.13 0.21 -1.09 16 7 C -0.13 -3.00 6.73 32.80 0.22 -2.78 16 8 C 0.16 3.92 3.05 45.14 0.14 4.06 16 9 H 0.06 1.86 7.67 -2.39 -0.02 1.84 16 10 N -0.71 -19.27 5.07 -441.84 -2.24 -21.51 16 11 C 0.51 19.97 7.83 87.66 0.69 20.66 16 12 O -0.59 -29.33 15.69 -3.02 -0.05 -29.38 16 13 C -0.12 -4.85 5.64 29.85 0.17 -4.69 16 14 C 0.04 2.40 4.26 29.85 0.13 2.53 16 15 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 16 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 18 N -0.94 -60.14 13.29 21.45 0.28 -59.85 16 19 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 23 C -0.12 -2.12 2.38 -10.61 -0.03 -2.15 16 24 H 0.10 1.64 7.92 -2.38 -0.02 1.62 16 25 C 0.05 0.98 6.57 85.00 0.56 1.54 16 26 H 0.03 0.35 8.11 -2.39 -0.02 0.33 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.83 7.64 -2.39 -0.02 0.81 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.60 7.98 -2.39 -0.02 1.58 16 35 H 0.42 8.28 8.45 -92.70 -0.78 7.49 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 38 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 39 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 40 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 0.87 7.86 -2.39 -0.02 0.86 16 Total: -1.00 -75.89 336.23 -0.37 -76.25 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.20 Total: 13.73 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.50 Total: -12.05 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -7.04 Total: -95.19 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.89 -0.37 -76.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349692647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.661 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds