Wall clock time and date at job start Mon Mar 30 2020 01:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47993 * 110.99946 * 2 1 4 4 C 1.54003 * 106.87540 * 211.35679 * 3 2 1 5 5 H 1.08999 * 112.53184 * 241.78450 * 4 3 2 6 6 C 1.54783 * 108.55928 * 116.52503 * 4 3 2 7 7 C 1.54890 * 102.92436 * 211.76129 * 6 4 3 8 8 C 1.54357 * 103.76573 * 39.39094 * 7 6 4 9 9 H 1.08999 * 110.06247 * 213.54070 * 8 7 6 10 10 N 1.46498 * 110.06321 * 92.08304 * 8 7 6 11 11 C 1.34778 * 119.99824 * 152.49931 * 10 8 7 12 12 O 1.21284 * 120.00103 * 0.02562 * 11 10 8 13 13 C 1.50698 * 119.99854 * 180.02562 * 11 10 8 14 14 C 1.53001 * 109.46935 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46784 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00631 * 359.97438 * 15 14 13 17 17 C 1.37887 * 119.99833 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47171 * 60.00243 * 19 17 15 21 21 H 1.48504 * 109.47345 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47374 * 300.00220 * 19 17 15 23 23 C 1.54423 * 106.55800 * 332.42839 * 8 7 6 24 24 H 1.09007 * 113.16048 * 241.31298 * 23 8 7 25 25 C 1.48604 * 110.99814 * 243.14991 * 2 1 3 26 26 H 1.09003 * 109.46974 * 176.84876 * 1 2 3 27 27 H 1.08997 * 109.47365 * 296.84497 * 1 2 3 28 28 H 1.09004 * 109.47172 * 56.84973 * 1 2 3 29 29 H 1.09007 * 109.97915 * 330.70440 * 3 2 1 30 30 H 1.09000 * 109.98070 * 91.99822 * 3 2 1 31 31 H 1.08995 * 110.72355 * 330.12342 * 6 4 3 32 32 H 1.09001 * 110.72286 * 93.22456 * 6 4 3 33 33 H 1.08994 * 110.56611 * 157.95850 * 7 6 4 34 34 H 1.09004 * 110.56943 * 280.82252 * 7 6 4 35 35 H 0.96998 * 120.00040 * 332.50437 * 10 8 7 36 36 H 1.09002 * 109.47268 * 299.99595 * 13 11 10 37 37 H 1.08997 * 109.47568 * 59.99796 * 13 11 10 38 38 H 1.09001 * 109.46872 * 299.99307 * 14 13 11 39 39 H 1.08995 * 109.47157 * 60.00299 * 14 13 11 40 40 H 0.96990 * 120.00356 * 179.97438 * 18 17 15 41 41 H 1.08998 * 110.66245 * 279.35534 * 25 2 1 42 42 H 1.08999 * 110.66657 * 42.31950 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3816 0.0000 4 6 3.3344 1.3480 -0.7669 5 1 4.1806 1.6410 -0.1454 6 6 3.1968 2.2257 -2.0343 7 6 4.1265 1.5161 -3.0498 8 6 3.8831 0.0152 -2.7839 9 1 4.8017 -0.5477 -2.9496 10 7 2.8223 -0.4852 -3.6618 11 6 2.8025 -1.7837 -4.0223 12 8 3.6626 -2.5381 -3.6195 13 6 1.7117 -2.2983 -4.9258 14 6 1.9206 -3.7930 -5.1772 15 6 0.8294 -4.3077 -6.0802 16 1 0.0633 -3.6361 -6.4387 17 6 0.8090 -5.6362 -6.4489 18 7 1.7415 -6.4542 -6.0121 19 14 -0.5431 -6.2740 -7.5688 20 1 -0.5011 -5.5437 -8.8612 21 1 -0.3406 -7.7248 -7.8128 22 1 -1.8630 -6.0608 -6.9225 23 6 3.4575 -0.1064 -1.3045 24 1 4.1417 -0.7119 -0.7099 25 6 2.0015 -0.6266 -1.2378 26 1 -0.3633 -1.0261 -0.0565 27 1 -0.3634 0.4640 0.9169 28 1 -0.3634 0.5620 -0.8604 29 1 1.2987 2.0495 -0.5013 30 1 2.1662 1.7166 1.0238 31 1 2.1669 2.2291 -2.3912 32 1 3.5390 3.2420 -1.8388 33 1 3.8462 1.7744 -4.0709 34 1 5.1684 1.7744 -2.8606 35 1 2.1344 0.1181 -3.9837 36 1 0.7429 -2.1420 -4.4513 37 1 1.7424 -1.7622 -5.8743 38 1 2.8893 -3.9498 -5.6516 39 1 1.8894 -4.3288 -4.2285 40 1 1.7270 -7.3888 -6.2711 41 1 1.9846 -1.7134 -1.1566 42 1 1.4354 -0.2983 -2.1094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349692648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:38 Heat of formation + Delta-G solvation = -40.751271 kcal Electronic energy + Delta-G solvation = -20940.496329 eV Core-core repulsion = 17919.744204 eV Total energy + Delta-G solvation = -3020.752125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66830 -38.58681 -35.87200 -33.44312 -33.30694 -31.02251 -30.04157 -29.34216 -26.24319 -25.35740 -25.11254 -22.00634 -21.06695 -20.52395 -19.72194 -19.24832 -17.10375 -16.39246 -16.11520 -15.59925 -15.37094 -14.50271 -14.42574 -14.38909 -14.29822 -13.53282 -13.35021 -13.15608 -12.96248 -12.30404 -12.20073 -11.71790 -11.62692 -11.51713 -11.34658 -11.15072 -11.01312 -10.93839 -10.88610 -10.71287 -10.62690 -10.60524 -9.94734 -9.65216 -9.17151 -8.99627 -8.80301 -8.40961 -8.30690 -5.95073 -3.99616 3.25463 3.34699 3.39318 3.40763 3.55062 3.93666 4.18878 4.43648 4.48464 4.56551 4.98859 5.04200 5.15424 5.20531 5.27632 5.31619 5.38538 5.39713 5.43505 5.45902 5.52133 5.61372 5.67013 5.75770 5.81069 5.87457 6.01027 6.03132 6.15067 6.21683 6.22866 6.27614 6.75183 6.82290 6.89988 6.94705 7.74797 7.87429 7.90014 8.08249 8.39697 8.80781 9.08881 9.63812 11.15828 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.004217 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.602023 B = 6638.712735 C = 7122.399913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.039 3.961 4 C -0.100 4.100 5 H 0.089 0.911 6 C -0.120 4.120 7 C -0.130 4.130 8 C 0.144 3.856 9 H 0.091 0.909 10 N -0.736 5.736 11 C 0.510 3.490 12 O -0.531 6.531 13 C -0.130 4.130 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.100 4.100 24 H 0.092 0.908 25 C 0.044 3.956 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.394 0.606 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 20.154 9.829 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.089 4.089 4 C -0.119 4.119 5 H 0.108 0.892 6 C -0.157 4.157 7 C -0.168 4.168 8 C 0.038 3.962 9 H 0.109 0.891 10 N -0.389 5.389 11 C 0.298 3.702 12 O -0.405 6.405 13 C -0.170 4.170 14 C 0.001 3.999 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.120 4.120 24 H 0.111 0.889 25 C -0.083 4.083 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.847 19.088 10.576 21.900 hybrid contribution -1.439 0.339 -1.424 2.053 sum 0.407 19.427 9.152 21.479 Atomic orbital electron populations 1.22499 0.88035 1.02318 1.00459 1.64906 1.08015 1.14582 1.37280 1.22994 0.95232 0.90287 1.00343 1.22851 0.97474 0.95385 0.96183 0.89236 1.22671 0.99685 0.98548 0.94830 1.22695 1.00459 0.93918 0.99688 1.21511 0.92018 0.94195 0.88522 0.89062 1.46338 1.30156 1.10942 1.51497 1.21541 0.87212 0.80829 0.80587 1.90672 1.39158 1.55845 1.54870 1.21867 0.95409 1.02465 0.97307 1.18881 0.97330 0.86300 0.97428 1.21184 1.11077 0.94401 1.29985 0.92739 1.25016 0.95932 0.97036 0.96310 1.69982 1.33408 1.04693 1.44707 0.86663 0.82342 0.77818 0.81158 1.20271 1.21266 1.20276 1.23135 0.97326 0.95592 0.95941 0.88927 1.23311 0.94230 1.00269 0.90507 0.91081 0.91596 0.95520 0.93781 0.90853 0.91612 0.91283 0.90757 0.90235 0.77152 0.90483 0.90369 0.95853 0.95833 0.92890 0.90082 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.45 60.07 0.57 0.73 16 2 N -0.52 -6.34 5.58 -238.68 -1.33 -7.67 16 3 C 0.04 0.39 6.22 -2.70 -0.02 0.37 16 4 C -0.10 -0.92 3.88 -87.80 -0.34 -1.26 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.12 -0.94 6.18 -24.80 -0.15 -1.09 16 7 C -0.13 -1.13 6.43 -25.02 -0.16 -1.29 16 8 C 0.14 1.74 3.22 -66.47 -0.21 1.53 16 9 H 0.09 1.31 7.49 -51.93 -0.39 0.92 16 10 N -0.74 -9.91 3.08 -52.40 -0.16 -10.08 16 11 C 0.51 9.56 7.29 -10.99 -0.08 9.48 16 12 O -0.53 -12.30 15.60 5.55 0.09 -12.22 16 13 C -0.13 -2.63 5.64 -27.88 -0.16 -2.78 16 14 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.10 -1.20 4.03 -87.59 -0.35 -1.55 16 24 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 25 C 0.04 0.59 4.94 -1.95 -0.01 0.58 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.27 7.98 -51.93 -0.41 -0.15 16 29 H 0.04 0.40 6.86 -51.92 -0.36 0.04 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.39 4.30 8.28 -40.82 -0.34 3.96 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.06 0.72 6.10 -51.93 -0.32 0.41 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -33.21 330.48 -9.39 -42.60 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.23 Total: 0.56 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.45 Total: -8.10 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.76 Total: -44.53 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.21 -9.39 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349692648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.853 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds