Wall clock time and date at job start Mon Mar 30 2020 01:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47993 * 110.99946 * 2 1 4 4 C 1.54003 * 106.87540 * 211.35679 * 3 2 1 5 5 H 1.08999 * 112.53184 * 241.78450 * 4 3 2 6 6 C 1.54783 * 108.55928 * 116.52503 * 4 3 2 7 7 C 1.54890 * 102.92436 * 211.76129 * 6 4 3 8 8 C 1.54357 * 103.76573 * 39.39094 * 7 6 4 9 9 H 1.08999 * 110.06247 * 213.54070 * 8 7 6 10 10 N 1.46498 * 110.06321 * 92.08304 * 8 7 6 11 11 C 1.34778 * 119.99824 * 152.49931 * 10 8 7 12 12 O 1.21284 * 120.00103 * 0.02562 * 11 10 8 13 13 C 1.50698 * 119.99854 * 180.02562 * 11 10 8 14 14 C 1.53001 * 109.46935 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46784 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00631 * 359.97438 * 15 14 13 17 17 C 1.37887 * 119.99833 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47171 * 60.00243 * 19 17 15 21 21 H 1.48504 * 109.47345 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47374 * 300.00220 * 19 17 15 23 23 C 1.54423 * 106.55800 * 332.42839 * 8 7 6 24 24 H 1.09007 * 113.16048 * 241.31298 * 23 8 7 25 25 C 1.48604 * 110.99814 * 243.14991 * 2 1 3 26 26 H 1.09003 * 109.46974 * 176.84876 * 1 2 3 27 27 H 1.08997 * 109.47365 * 296.84497 * 1 2 3 28 28 H 1.09004 * 109.47172 * 56.84973 * 1 2 3 29 29 H 1.09007 * 109.97915 * 330.70440 * 3 2 1 30 30 H 1.09000 * 109.98070 * 91.99822 * 3 2 1 31 31 H 1.08995 * 110.72355 * 330.12342 * 6 4 3 32 32 H 1.09001 * 110.72286 * 93.22456 * 6 4 3 33 33 H 1.08994 * 110.56611 * 157.95850 * 7 6 4 34 34 H 1.09004 * 110.56943 * 280.82252 * 7 6 4 35 35 H 0.96998 * 120.00040 * 332.50437 * 10 8 7 36 36 H 1.09002 * 109.47268 * 299.99595 * 13 11 10 37 37 H 1.08997 * 109.47568 * 59.99796 * 13 11 10 38 38 H 1.09001 * 109.46872 * 299.99307 * 14 13 11 39 39 H 1.08995 * 109.47157 * 60.00299 * 14 13 11 40 40 H 0.96990 * 120.00356 * 179.97438 * 18 17 15 41 41 H 1.08998 * 110.66245 * 279.35534 * 25 2 1 42 42 H 1.08999 * 110.66657 * 42.31950 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3816 0.0000 4 6 3.3344 1.3480 -0.7669 5 1 4.1806 1.6410 -0.1454 6 6 3.1968 2.2257 -2.0343 7 6 4.1265 1.5161 -3.0498 8 6 3.8831 0.0152 -2.7839 9 1 4.8017 -0.5477 -2.9496 10 7 2.8223 -0.4852 -3.6618 11 6 2.8025 -1.7837 -4.0223 12 8 3.6626 -2.5381 -3.6195 13 6 1.7117 -2.2983 -4.9258 14 6 1.9206 -3.7930 -5.1772 15 6 0.8294 -4.3077 -6.0802 16 1 0.0633 -3.6361 -6.4387 17 6 0.8090 -5.6362 -6.4489 18 7 1.7415 -6.4542 -6.0121 19 14 -0.5431 -6.2740 -7.5688 20 1 -0.5011 -5.5437 -8.8612 21 1 -0.3406 -7.7248 -7.8128 22 1 -1.8630 -6.0608 -6.9225 23 6 3.4575 -0.1064 -1.3045 24 1 4.1417 -0.7119 -0.7099 25 6 2.0015 -0.6266 -1.2378 26 1 -0.3633 -1.0261 -0.0565 27 1 -0.3634 0.4640 0.9169 28 1 -0.3634 0.5620 -0.8604 29 1 1.2987 2.0495 -0.5013 30 1 2.1662 1.7166 1.0238 31 1 2.1669 2.2291 -2.3912 32 1 3.5390 3.2420 -1.8388 33 1 3.8462 1.7744 -4.0709 34 1 5.1684 1.7744 -2.8606 35 1 2.1344 0.1181 -3.9837 36 1 0.7429 -2.1420 -4.4513 37 1 1.7424 -1.7622 -5.8743 38 1 2.8893 -3.9498 -5.6516 39 1 1.8894 -4.3288 -4.2285 40 1 1.7270 -7.3888 -6.2711 41 1 1.9846 -1.7134 -1.1566 42 1 1.4354 -0.2983 -2.1094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349692648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:37 Heat of formation + Delta-G solvation = -64.297795 kcal Electronic energy + Delta-G solvation = -20941.517383 eV Core-core repulsion = 17919.744204 eV Total energy + Delta-G solvation = -3021.773179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71865 -39.97061 -36.88824 -35.55815 -34.49850 -32.96146 -30.90904 -30.40946 -27.85918 -26.52525 -26.11480 -23.82400 -22.04349 -21.41540 -21.23584 -20.20696 -18.87395 -17.79984 -17.19999 -17.02049 -16.68800 -16.43687 -15.82511 -15.28898 -15.26910 -14.73813 -14.39779 -14.25830 -14.11141 -14.08754 -13.81417 -13.24062 -12.79795 -12.63182 -12.57059 -12.48401 -12.37663 -12.18721 -11.92499 -11.84813 -11.69066 -11.63910 -11.61027 -11.44680 -11.32687 -10.68854 -10.56604 -10.02056 -9.34877 -8.18135 -6.32580 1.41406 1.45985 1.53773 1.73215 2.25981 2.44900 3.04512 3.14709 3.35585 3.59867 3.78076 4.06505 4.14142 4.25886 4.31570 4.35484 4.41840 4.48629 4.49647 4.54727 4.56872 4.60688 4.67042 4.74827 4.87821 4.95467 5.00025 5.04754 5.07159 5.14257 5.21882 5.24045 5.45647 5.47885 5.62466 5.63147 5.84937 5.86573 6.08510 6.17124 6.62436 6.85794 7.37035 7.39241 8.94381 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.004217 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.602023 B = 6638.712735 C = 7122.399913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.543 5.543 3 C 0.040 3.960 4 C -0.091 4.091 5 H 0.103 0.897 6 C -0.110 4.110 7 C -0.119 4.119 8 C 0.139 3.861 9 H 0.063 0.937 10 N -0.708 5.708 11 C 0.513 3.487 12 O -0.586 6.586 13 C -0.120 4.120 14 C 0.044 3.956 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.261 1.261 21 H -0.288 1.288 22 H -0.263 1.263 23 C -0.105 4.105 24 H 0.071 0.929 25 C 0.048 3.952 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.413 0.587 36 H 0.099 0.901 37 H 0.104 0.896 38 H -0.018 1.018 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.037 0.963 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 23.564 9.202 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.267 5.267 3 C -0.088 4.088 4 C -0.110 4.110 5 H 0.121 0.879 6 C -0.148 4.148 7 C -0.157 4.157 8 C 0.033 3.967 9 H 0.081 0.919 10 N -0.361 5.361 11 C 0.301 3.699 12 O -0.466 6.466 13 C -0.160 4.160 14 C 0.006 3.994 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.125 4.125 24 H 0.089 0.911 25 C -0.080 4.080 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.250 0.750 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.000 1.000 39 H -0.002 1.002 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.109 22.585 9.957 24.683 hybrid contribution -0.868 -0.725 -1.147 1.611 sum -0.760 21.860 8.810 23.581 Atomic orbital electron populations 1.22526 0.87214 1.01833 1.01747 1.64852 1.09012 1.16402 1.36422 1.23077 0.95494 0.88924 1.01263 1.22860 0.97871 0.93162 0.97100 0.87870 1.22660 0.99712 0.99254 0.93138 1.22671 1.01784 0.90422 1.00782 1.21682 0.90146 0.96540 0.88302 0.91903 1.46014 1.30622 1.09169 1.50343 1.21260 0.86179 0.82195 0.80239 1.90659 1.41131 1.57711 1.57053 1.21631 0.96979 0.98044 0.99309 1.18660 0.95234 0.90776 0.94705 1.21684 1.11557 0.95129 1.29864 0.90653 1.26137 0.98695 0.97444 0.98067 1.70171 1.35970 1.05118 1.46513 0.85379 0.78886 0.76903 0.79107 1.18600 1.21323 1.18740 1.23082 0.95975 0.97714 0.95745 0.91079 1.23135 0.95404 0.97894 0.91536 0.92523 0.89944 0.94513 0.92242 0.89919 0.91208 0.88677 0.89592 0.88809 0.74972 0.88232 0.87776 0.99996 1.00204 0.92861 0.94404 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.45 127.69 1.21 1.51 16 2 N -0.54 -12.65 5.58 -909.05 -5.07 -17.72 16 3 C 0.04 0.67 6.22 86.43 0.54 1.20 16 4 C -0.09 -1.44 3.88 -8.97 -0.03 -1.47 16 5 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.11 -1.26 6.18 31.85 0.20 -1.06 16 7 C -0.12 -1.70 6.43 31.70 0.20 -1.49 16 8 C 0.14 3.30 3.22 45.94 0.15 3.45 16 9 H 0.06 1.88 7.49 -2.39 -0.02 1.87 16 10 N -0.71 -18.58 3.08 -438.07 -1.35 -19.93 16 11 C 0.51 19.80 7.29 87.66 0.64 20.44 16 12 O -0.59 -29.12 15.60 -3.04 -0.05 -29.16 16 13 C -0.12 -4.84 5.64 29.85 0.17 -4.68 16 14 C 0.04 2.48 4.26 29.85 0.13 2.61 16 15 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 16 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 17 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 18 N -0.94 -60.22 13.29 21.45 0.28 -59.93 16 19 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 C -0.10 -2.52 4.03 -8.83 -0.04 -2.55 16 24 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 25 C 0.05 1.31 4.94 86.57 0.43 1.73 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 28 H 0.04 0.65 7.98 -2.38 -0.02 0.63 16 29 H 0.06 0.84 6.86 -2.38 -0.02 0.82 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 0.79 7.52 -2.39 -0.02 0.77 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 34 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.41 7.94 8.28 -92.71 -0.77 7.17 16 36 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 38 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 39 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 40 H 0.26 15.83 8.31 -92.72 -0.77 15.05 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.52 6.10 -2.39 -0.01 1.51 16 Total: -1.00 -77.57 330.48 0.35 -77.22 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.22 Total: 14.20 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.28 Total: -11.26 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -6.13 Total: -97.59 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.57 0.35 -77.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349692648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.923 kcal (2) G-P(sol) polarization free energy of solvation -77.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds