Wall clock time and date at job start Mon Mar 30 2020 01:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32992 * 1 3 3 C 1.50701 * 120.00033 * 2 1 4 4 N 1.46895 * 109.46948 * 95.84355 * 3 2 1 5 5 C 1.46904 * 111.00041 * 169.99707 * 4 3 2 6 6 C 1.46900 * 111.00431 * 293.95765 * 4 3 2 7 7 C 1.47106 * 119.99905 * 180.02562 * 2 1 3 8 8 O 1.21613 * 119.99919 * 261.42079 * 7 2 1 9 9 N 1.34775 * 119.99992 * 81.42369 * 7 2 1 10 10 C 1.46928 * 120.62977 * 175.36534 * 9 7 2 11 11 C 1.53195 * 108.89083 * 233.55441 * 10 9 7 12 12 C 1.53071 * 109.29395 * 305.57974 * 11 10 9 13 13 C 1.50701 * 109.43904 * 181.23709 * 12 11 10 14 14 H 1.08010 * 119.99849 * 239.79153 * 13 12 11 15 15 C 1.37872 * 120.00419 * 59.79313 * 13 12 11 16 16 N 1.31521 * 119.99724 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00502 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47319 * 119.99876 * 17 15 13 20 20 H 1.48497 * 109.47584 * 239.99989 * 17 15 13 21 21 C 1.53042 * 109.66111 * 61.15323 * 12 11 10 22 22 C 1.46927 * 120.63302 * 355.37991 * 9 7 2 23 23 H 1.08001 * 120.00134 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.00218 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47089 * 215.84681 * 3 2 1 26 26 H 1.08998 * 109.46809 * 335.84657 * 3 2 1 27 27 H 1.09003 * 109.46426 * 60.00292 * 5 4 3 28 28 H 1.08995 * 109.47176 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47047 * 300.00442 * 5 4 3 30 30 H 1.08996 * 109.46918 * 59.99354 * 6 4 3 31 31 H 1.08995 * 109.47160 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.46416 * 299.99909 * 6 4 3 33 33 H 1.08996 * 109.58397 * 353.41581 * 10 9 7 34 34 H 1.08996 * 109.58595 * 113.69823 * 10 9 7 35 35 H 1.09004 * 109.49663 * 65.38793 * 11 10 9 36 36 H 1.09001 * 109.49710 * 185.48487 * 11 10 9 37 37 H 1.09001 * 109.34852 * 301.12157 * 12 11 10 38 38 H 0.96999 * 119.99827 * 179.97438 * 16 15 13 39 39 H 1.09008 * 109.49625 * 178.74533 * 21 12 11 40 40 H 1.08997 * 109.52543 * 58.66966 * 21 12 11 41 41 H 1.08996 * 109.59306 * 246.16109 * 22 9 7 42 42 H 1.09003 * 109.58611 * 6.44451 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 7 2.4504 1.6586 1.3778 5 6 3.3841 2.7925 1.3995 6 6 1.2560 1.9446 2.1838 7 6 2.0654 -1.2740 -0.0006 8 8 2.5055 -1.7225 1.0407 9 7 2.2516 -1.9441 -1.1550 10 6 3.0695 -3.1642 -1.1888 11 6 4.1484 -3.0084 -2.2652 12 6 3.4850 -2.6556 -3.5988 13 6 4.5410 -2.5315 -4.6669 14 1 4.6651 -1.5990 -5.1977 15 6 5.3484 -3.6081 -4.9665 16 7 5.1975 -4.7433 -4.3198 17 14 6.6577 -3.4540 -6.2898 18 1 6.6241 -2.0841 -6.8624 19 1 7.9945 -3.7100 -5.6959 20 1 6.3953 -4.4453 -7.3638 21 6 2.7357 -1.3279 -3.4659 22 6 1.6408 -1.4683 -2.4037 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.9865 1.2032 -0.6018 26 1 1.4530 2.0886 -0.4205 27 1 2.9160 3.6575 0.9295 28 1 3.6389 3.0337 2.4314 29 1 4.2896 2.5280 0.8535 30 1 0.6146 1.0637 2.2080 31 1 1.5564 2.2038 3.1990 32 1 0.7110 2.7789 1.7423 33 1 3.5411 -3.3149 -0.2178 34 1 2.4384 -4.0208 -1.4253 35 1 4.8344 -2.2108 -1.9800 36 1 4.6991 -3.9437 -2.3664 37 1 2.7828 -3.4432 -3.8724 38 1 5.7654 -5.5009 -4.5309 39 1 2.2831 -1.0681 -4.4229 40 1 3.4327 -0.5444 -3.1686 41 1 0.8936 -2.1862 -2.7419 42 1 1.1677 -0.5011 -2.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466803597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:54 Heat of formation + Delta-G solvation = -13.812306 kcal Electronic energy + Delta-G solvation = -21049.628478 eV Core-core repulsion = 18030.044513 eV Total energy + Delta-G solvation = -3019.583964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80595 -37.69552 -36.60008 -33.79839 -33.11541 -30.97645 -30.05717 -27.73754 -27.09942 -26.26453 -23.71043 -22.55024 -22.16872 -21.29858 -19.26922 -17.90627 -16.68055 -16.22152 -15.73810 -15.43574 -15.27226 -14.72328 -14.55152 -14.24381 -13.76998 -13.35595 -13.05009 -12.74089 -12.57822 -12.46028 -12.32238 -12.09940 -11.79909 -11.77207 -11.73124 -11.32234 -11.15490 -10.95091 -10.62221 -10.40577 -10.09145 -9.58948 -9.53508 -9.41837 -9.04727 -8.89640 -8.37828 -8.36636 -7.94835 -6.01534 -4.08292 1.80009 3.00465 3.27936 3.36549 3.39538 3.57278 4.00670 4.41512 4.71736 4.80964 5.06132 5.17389 5.24866 5.28279 5.37534 5.47453 5.48603 5.58895 5.62134 5.78475 5.80730 5.83584 5.95390 6.05338 6.20375 6.32725 6.41442 6.44108 6.49090 6.64464 6.87705 6.90316 6.94805 6.98194 7.22068 7.36312 7.70607 7.92357 7.97149 8.08010 8.40734 8.63249 8.95353 9.56946 11.03883 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028196 B = 0.004618 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.793537 B = 6061.526984 C = 6351.035964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C 0.100 3.900 4 N -0.538 5.538 5 C 0.026 3.974 6 C 0.024 3.976 7 C 0.551 3.449 8 O -0.539 6.539 9 N -0.597 5.597 10 C 0.109 3.891 11 C -0.122 4.122 12 C 0.048 3.952 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.123 4.123 22 C 0.107 3.893 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 11.914 7.523 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.028 4.028 4 N -0.261 5.261 5 C -0.122 4.122 6 C -0.124 4.124 7 C 0.338 3.662 8 O -0.417 6.417 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.160 4.160 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.161 4.161 22 C -0.016 4.016 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.574 11.082 8.281 16.276 hybrid contribution 0.318 0.717 -1.176 1.414 sum -8.256 11.799 7.105 16.058 Atomic orbital electron populations 1.24283 0.94130 1.02607 0.98259 1.21514 0.95294 0.94761 1.01553 1.20999 0.99518 0.92217 0.90040 1.61845 1.15100 1.38075 1.11086 1.22387 0.96500 0.91008 1.02295 1.22429 0.92198 1.00145 0.97674 1.18384 0.79977 0.84137 0.83718 1.90772 1.50702 1.68768 1.31444 1.48264 1.49976 1.27107 1.07601 1.21883 0.93530 0.84546 1.01230 1.22014 0.96235 1.03792 0.93969 1.18647 0.94489 0.90989 0.92915 1.21224 1.17119 0.97821 1.18930 0.92691 1.24965 0.97348 0.95345 0.96310 1.69857 1.39620 1.02245 1.41168 0.86571 0.81750 0.78039 0.81828 1.19866 1.21050 1.21068 1.22003 0.96595 1.01376 0.96164 1.21844 0.96280 0.98792 0.84656 0.87327 0.87611 0.89597 0.93406 0.95797 0.91252 0.91117 0.90915 0.91471 0.95977 0.90665 0.92385 0.94379 0.87818 0.95511 0.93006 0.92146 0.92941 0.91974 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 12.07 28.91 0.35 -1.37 16 2 C -0.13 -1.80 2.88 -102.84 -0.30 -2.10 16 3 C 0.10 1.28 5.13 -4.98 -0.03 1.25 16 4 N -0.54 -6.96 5.01 -252.72 -1.27 -8.23 16 5 C 0.03 0.27 9.57 60.07 0.57 0.85 16 6 C 0.02 0.25 9.21 60.06 0.55 0.81 16 7 C 0.55 10.13 7.08 -12.66 -0.09 10.04 16 8 O -0.54 -11.88 16.54 5.27 0.09 -11.79 16 9 N -0.60 -11.03 2.97 -174.16 -0.52 -11.55 16 10 C 0.11 2.25 6.41 -3.71 -0.02 2.22 16 11 C -0.12 -2.84 5.16 -26.59 -0.14 -2.97 16 12 C 0.05 1.14 2.06 -91.71 -0.19 0.95 16 13 C -0.51 -13.61 8.56 -34.44 -0.29 -13.91 16 14 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.79 11.30 55.43 0.63 -24.16 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 22 C 0.11 1.75 6.29 -3.71 -0.02 1.73 16 23 H 0.11 0.93 8.01 -52.49 -0.42 0.51 16 24 H 0.11 1.17 8.05 -52.49 -0.42 0.75 16 25 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 26 H 0.05 0.50 7.98 -51.93 -0.41 0.09 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.07 0.83 6.45 -51.93 -0.33 0.50 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.02 0.20 8.14 -51.92 -0.42 -0.22 16 33 H 0.07 1.59 7.03 -51.93 -0.37 1.22 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 2.70 6.03 -51.93 -0.31 2.38 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.96 5.92 -51.93 -0.31 0.65 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -30.49 334.80 -8.07 -38.55 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.18 Total: -0.30 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.16 Total: -3.46 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -1.16 Total: -43.94 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.49 -8.07 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466803597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.742 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds