Wall clock time and date at job start Mon Mar 30 2020 01:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32992 * 1 3 3 C 1.50701 * 120.00033 * 2 1 4 4 N 1.46895 * 109.46948 * 95.84355 * 3 2 1 5 5 C 1.46904 * 111.00041 * 169.99707 * 4 3 2 6 6 C 1.46900 * 111.00431 * 293.95765 * 4 3 2 7 7 C 1.47106 * 119.99905 * 180.02562 * 2 1 3 8 8 O 1.21613 * 119.99919 * 261.42079 * 7 2 1 9 9 N 1.34775 * 119.99992 * 81.42369 * 7 2 1 10 10 C 1.46928 * 120.62977 * 175.36534 * 9 7 2 11 11 C 1.53195 * 108.89083 * 233.55441 * 10 9 7 12 12 C 1.53071 * 109.29395 * 305.57974 * 11 10 9 13 13 C 1.50701 * 109.43904 * 181.23709 * 12 11 10 14 14 H 1.08010 * 119.99849 * 239.79153 * 13 12 11 15 15 C 1.37872 * 120.00419 * 59.79313 * 13 12 11 16 16 N 1.31521 * 119.99724 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00502 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47319 * 119.99876 * 17 15 13 20 20 H 1.48497 * 109.47584 * 239.99989 * 17 15 13 21 21 C 1.53042 * 109.66111 * 61.15323 * 12 11 10 22 22 C 1.46927 * 120.63302 * 355.37991 * 9 7 2 23 23 H 1.08001 * 120.00134 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.00218 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47089 * 215.84681 * 3 2 1 26 26 H 1.08998 * 109.46809 * 335.84657 * 3 2 1 27 27 H 1.09003 * 109.46426 * 60.00292 * 5 4 3 28 28 H 1.08995 * 109.47176 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47047 * 300.00442 * 5 4 3 30 30 H 1.08996 * 109.46918 * 59.99354 * 6 4 3 31 31 H 1.08995 * 109.47160 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.46416 * 299.99909 * 6 4 3 33 33 H 1.08996 * 109.58397 * 353.41581 * 10 9 7 34 34 H 1.08996 * 109.58595 * 113.69823 * 10 9 7 35 35 H 1.09004 * 109.49663 * 65.38793 * 11 10 9 36 36 H 1.09001 * 109.49710 * 185.48487 * 11 10 9 37 37 H 1.09001 * 109.34852 * 301.12157 * 12 11 10 38 38 H 0.96999 * 119.99827 * 179.97438 * 16 15 13 39 39 H 1.09008 * 109.49625 * 178.74533 * 21 12 11 40 40 H 1.08997 * 109.52543 * 58.66966 * 21 12 11 41 41 H 1.08996 * 109.59306 * 246.16109 * 22 9 7 42 42 H 1.09003 * 109.58611 * 6.44451 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 7 2.4504 1.6586 1.3778 5 6 3.3841 2.7925 1.3995 6 6 1.2560 1.9446 2.1838 7 6 2.0654 -1.2740 -0.0006 8 8 2.5055 -1.7225 1.0407 9 7 2.2516 -1.9441 -1.1550 10 6 3.0695 -3.1642 -1.1888 11 6 4.1484 -3.0084 -2.2652 12 6 3.4850 -2.6556 -3.5988 13 6 4.5410 -2.5315 -4.6669 14 1 4.6651 -1.5990 -5.1977 15 6 5.3484 -3.6081 -4.9665 16 7 5.1975 -4.7433 -4.3198 17 14 6.6577 -3.4540 -6.2898 18 1 6.6241 -2.0841 -6.8624 19 1 7.9945 -3.7100 -5.6959 20 1 6.3953 -4.4453 -7.3638 21 6 2.7357 -1.3279 -3.4659 22 6 1.6408 -1.4683 -2.4037 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.9865 1.2032 -0.6018 26 1 1.4530 2.0886 -0.4205 27 1 2.9160 3.6575 0.9295 28 1 3.6389 3.0337 2.4314 29 1 4.2896 2.5280 0.8535 30 1 0.6146 1.0637 2.2080 31 1 1.5564 2.2038 3.1990 32 1 0.7110 2.7789 1.7423 33 1 3.5411 -3.3149 -0.2178 34 1 2.4384 -4.0208 -1.4253 35 1 4.8344 -2.2108 -1.9800 36 1 4.6991 -3.9437 -2.3664 37 1 2.7828 -3.4432 -3.8724 38 1 5.7654 -5.5009 -4.5309 39 1 2.2831 -1.0681 -4.4229 40 1 3.4327 -0.5444 -3.1686 41 1 0.8936 -2.1862 -2.7419 42 1 1.1677 -0.5011 -2.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466803597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:53 Heat of formation + Delta-G solvation = -33.566478 kcal Electronic energy + Delta-G solvation = -21050.485083 eV Core-core repulsion = 18030.044513 eV Total energy + Delta-G solvation = -3020.440569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21909 -38.79648 -38.10009 -35.41581 -34.43656 -32.76440 -31.68295 -28.53712 -28.14307 -27.88847 -25.33616 -24.11182 -23.25596 -22.65438 -20.88273 -19.31836 -18.47054 -17.67157 -17.06222 -16.53322 -16.47891 -16.22287 -15.84994 -15.45867 -14.96586 -14.92182 -14.63448 -14.40166 -14.07277 -13.59813 -13.42698 -13.26726 -13.16765 -13.06475 -12.83076 -12.68621 -12.58491 -12.42190 -12.22890 -12.16077 -11.95331 -11.42741 -11.09713 -10.85147 -10.82213 -10.41456 -10.28576 -9.54724 -9.20293 -8.07470 -6.21453 0.84654 1.40396 1.43327 1.53365 1.60590 2.18279 2.44131 3.18173 3.19394 3.55670 3.88099 4.11572 4.23448 4.30886 4.35272 4.35575 4.46728 4.52106 4.57694 4.60388 4.69823 4.73113 4.73841 4.81245 4.90573 4.98560 5.00908 5.06278 5.17102 5.23622 5.31233 5.46012 5.47059 5.54406 5.68247 5.97869 6.07132 6.11064 6.15629 6.38310 6.54226 6.90483 7.19783 7.47022 8.96283 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028196 B = 0.004618 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.793537 B = 6061.526984 C = 6351.035964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.159 4.159 3 C 0.106 3.894 4 N -0.571 5.571 5 C 0.028 3.972 6 C 0.026 3.974 7 C 0.549 3.451 8 O -0.585 6.585 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.109 4.109 12 C 0.045 3.955 13 C -0.531 4.531 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.280 1.280 21 C -0.115 4.115 22 C 0.113 3.887 23 H 0.147 0.853 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.004 0.996 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 14.206 7.131 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.163 4.163 3 C -0.022 4.022 4 N -0.295 5.295 5 C -0.120 4.120 6 C -0.121 4.121 7 C 0.338 3.662 8 O -0.466 6.466 9 N -0.332 5.332 10 C -0.003 4.003 11 C -0.148 4.148 12 C 0.026 3.974 13 C -0.569 4.569 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.206 1.206 21 C -0.153 4.153 22 C -0.008 4.008 23 H 0.164 0.836 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.022 0.978 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.525 13.400 7.871 18.770 hybrid contribution 0.888 -0.022 -1.027 1.358 sum -9.637 13.379 6.844 17.852 Atomic orbital electron populations 1.24633 0.92844 1.04528 0.93349 1.21316 0.96082 0.92849 1.06011 1.20942 0.99056 0.92248 0.89938 1.61811 1.16536 1.39546 1.11657 1.22374 0.95835 0.90980 1.02789 1.22411 0.91511 1.00431 0.97782 1.19168 0.79291 0.85096 0.82604 1.90738 1.52703 1.70143 1.33004 1.48327 1.49657 1.26384 1.08840 1.21534 0.93189 0.86165 0.99380 1.21763 0.96542 1.01382 0.95108 1.18626 0.93884 0.92820 0.92064 1.21621 1.17909 0.97726 1.19619 0.92783 1.25716 0.99373 0.95176 0.98323 1.69993 1.40469 1.02813 1.42381 0.85618 0.79045 0.78279 0.79372 1.19048 1.21144 1.20628 1.21862 0.97053 0.98302 0.98110 1.21931 0.95230 1.01060 0.82607 0.83562 0.87368 0.91662 0.90349 0.94002 0.90581 0.92331 0.91857 0.91141 0.93785 0.91861 0.92039 0.96124 0.90943 0.97834 0.93102 0.90700 0.93509 0.90767 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 12.07 66.65 0.80 -1.26 16 2 C -0.16 -4.07 2.88 -18.70 -0.05 -4.12 16 3 C 0.11 2.43 5.13 85.56 0.44 2.87 16 4 N -0.57 -13.73 5.01 -953.48 -4.78 -18.51 16 5 C 0.03 0.54 9.57 127.69 1.22 1.76 16 6 C 0.03 0.49 9.21 127.69 1.18 1.66 16 7 C 0.55 19.80 7.08 86.57 0.61 20.41 16 8 O -0.59 -26.18 16.54 -4.07 -0.07 -26.25 16 9 N -0.60 -21.85 2.97 -823.18 -2.45 -24.30 16 10 C 0.12 5.07 6.41 86.36 0.55 5.62 16 11 C -0.11 -5.30 5.16 30.68 0.16 -5.14 16 12 C 0.04 2.15 2.06 -11.50 -0.02 2.13 16 13 C -0.53 -28.52 8.56 25.60 0.22 -28.30 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.69 5.30 84.65 0.45 1.14 16 16 N -0.92 -52.46 11.30 21.45 0.24 -52.22 16 17 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 22 C 0.11 3.46 6.29 86.36 0.54 4.00 16 23 H 0.15 1.58 8.01 -2.91 -0.02 1.56 16 24 H 0.11 1.93 8.05 -2.91 -0.02 1.91 16 25 H 0.06 1.73 8.06 -2.39 -0.02 1.71 16 26 H 0.08 1.30 7.98 -2.39 -0.02 1.28 16 27 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.06 1.27 6.45 -2.39 -0.02 1.26 16 31 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.06 2.80 7.03 -2.39 -0.02 2.79 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.07 3.97 6.03 -2.39 -0.01 3.95 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 38 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.11 2.52 5.92 -2.39 -0.01 2.51 16 Total: -1.00 -68.31 334.80 2.21 -66.10 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.97 Total: 13.27 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 6.26 Total: -3.37 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -6.98 Total: -95.03 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.07 Total: -26.25 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.31 2.21 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466803597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.530 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds