Wall clock time and date at job start Mon Mar 30 2020 00:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47177 * 2 1 4 4 C 1.36930 * 120.00184 * 263.79007 * 3 2 1 5 5 H 1.08007 * 120.00438 * 142.61350 * 4 3 2 6 6 C 1.38817 * 120.00254 * 322.61297 * 4 3 2 7 7 N 1.31621 * 120.00282 * 157.38467 * 6 4 3 8 8 Si 1.86800 * 119.99713 * 337.39440 * 6 4 3 9 9 H 1.48495 * 109.47404 * 95.71046 * 8 6 4 10 10 H 1.48500 * 109.46778 * 215.71198 * 8 6 4 11 11 H 1.48506 * 109.47040 * 335.70794 * 8 6 4 12 12 C 1.46497 * 119.99911 * 83.79120 * 3 2 1 13 13 C 1.53001 * 109.47392 * 89.99971 * 12 3 2 14 14 C 1.53004 * 109.47372 * 180.02562 * 13 12 3 15 15 N 1.46491 * 109.47206 * 179.97438 * 14 13 12 16 16 C 1.34782 * 119.99913 * 179.97438 * 15 14 13 17 17 O 1.21273 * 119.99855 * 359.72597 * 16 15 14 18 18 C 1.50704 * 119.99707 * 179.72766 * 16 15 14 19 19 H 1.08992 * 115.55005 * 325.57992 * 18 16 15 20 20 C 1.52998 * 117.49696 * 111.25669 * 18 16 15 21 21 C 1.52989 * 117.49314 * 179.90955 * 18 16 15 22 22 C 1.52996 * 138.58383 * 121.62289 * 21 18 16 23 23 C 1.52993 * 138.59222 * 23.40815 * 21 18 16 24 24 H 1.08994 * 109.47366 * 59.99541 * 1 2 3 25 25 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47060 * 299.99757 * 1 2 3 27 27 H 1.09004 * 109.47060 * 240.00243 * 2 1 3 28 28 H 1.08998 * 109.47486 * 119.99980 * 2 1 3 29 29 H 0.96994 * 119.99701 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.47179 * 330.00042 * 12 3 2 31 31 H 1.09007 * 109.47435 * 210.00262 * 12 3 2 32 32 H 1.08993 * 109.46850 * 59.99908 * 13 12 3 33 33 H 1.08999 * 109.47067 * 299.99862 * 13 12 3 34 34 H 1.08999 * 109.46759 * 59.99627 * 14 13 12 35 35 H 1.09003 * 109.46941 * 300.00431 * 14 13 12 36 36 H 0.97006 * 120.00030 * 359.72789 * 15 14 13 37 37 H 1.09001 * 117.49677 * 214.97944 * 20 18 16 38 38 H 1.08997 * 117.50383 * 359.97438 * 20 18 16 39 39 H 1.08997 * 117.50222 * 336.58924 * 22 21 18 40 40 H 1.09002 * 117.49960 * 121.61435 * 22 21 18 41 41 H 1.08998 * 117.49896 * 238.37553 * 23 21 18 42 42 H 1.08997 * 117.49855 * 23.37354 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3675 1.9840 -1.1789 5 1 2.1496 3.0301 -1.3359 6 6 3.0016 1.2506 -2.1723 7 7 2.9449 1.6520 -3.4246 8 14 3.9353 -0.3063 -1.7320 9 1 3.0562 -1.4854 -1.9370 10 1 5.1347 -0.4262 -2.5993 11 1 4.3573 -0.2448 -0.3095 12 6 2.1331 2.1175 1.2613 13 6 3.5251 1.8959 1.8564 14 6 3.6448 2.6644 3.1740 15 7 4.9773 2.4516 3.7442 16 6 5.3119 3.0360 4.9117 17 8 4.5115 3.7419 5.4878 18 6 6.6807 2.8121 5.5013 19 1 7.1090 1.8241 5.3334 20 6 7.6409 4.0029 5.5297 21 6 7.0003 3.5047 6.8275 22 6 7.4285 3.1247 8.2463 23 6 6.2516 4.0786 8.0319 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.3883 1.1396 -4.1186 30 1 1.3776 1.7598 1.9609 31 1 1.9822 3.1811 1.0762 32 1 4.2804 2.2536 1.1568 33 1 3.6759 0.8324 2.0416 34 1 2.8893 2.3062 3.8734 35 1 3.4937 3.7280 2.9893 36 1 5.6176 1.8873 3.2832 37 1 8.7011 3.7981 5.3808 38 1 7.2829 4.9481 5.1217 39 1 7.2019 2.1144 8.5868 40 1 8.3591 3.5500 8.6220 41 1 6.4080 5.1314 8.2667 42 1 5.2506 3.6961 8.2312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479856345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:25 Heat of formation + Delta-G solvation = 35.934527 kcal Electronic energy + Delta-G solvation = -19861.256267 eV Core-core repulsion = 16843.829487 eV Total energy + Delta-G solvation = -3017.426780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99600 -37.74786 -36.65183 -34.91047 -32.90371 -31.96847 -31.33230 -28.98400 -25.99671 -23.95884 -23.05814 -22.60798 -21.79864 -20.69202 -19.92954 -19.12467 -17.06727 -16.74187 -15.97898 -15.56579 -15.25169 -15.13162 -14.94184 -14.50756 -13.98344 -13.77424 -13.16113 -13.04918 -12.64539 -12.40354 -11.99768 -11.85360 -11.73837 -11.68044 -11.34372 -11.25239 -10.97330 -10.78208 -10.44001 -10.39103 -10.33147 -10.22166 -10.00400 -9.77176 -9.72855 -9.49641 -8.94701 -8.54861 -6.87075 -6.01838 -3.42505 2.47679 3.04425 3.28516 3.42894 3.47075 3.51402 3.66194 4.07036 4.49536 4.55506 4.61184 4.91219 4.93377 5.20415 5.23408 5.32985 5.37916 5.42278 5.43795 5.45876 5.63127 5.71966 5.74529 5.79515 5.92352 5.95712 6.03832 6.09502 6.24991 6.31345 6.35922 6.50632 6.59042 6.72347 6.79179 6.89452 7.06401 7.58242 8.04290 8.28049 8.36812 8.97361 9.69397 10.10839 11.14021 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.003538 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.476393 B = 7913.145637 C = 8309.904209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.605 5.605 4 C -0.267 4.267 5 H 0.079 0.921 6 C 0.035 3.965 7 N -0.900 5.900 8 Si 0.878 3.122 9 H -0.287 1.287 10 H -0.302 1.302 11 H -0.268 1.268 12 C 0.156 3.844 13 C -0.153 4.153 14 C 0.121 3.879 15 N -0.724 5.724 16 C 0.537 3.463 17 O -0.539 6.539 18 C -0.142 4.142 19 H 0.123 0.877 20 C -0.100 4.100 21 C -0.202 4.202 22 C -0.131 4.131 23 C -0.113 4.113 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 0.115 18.979 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.327 5.327 4 C -0.396 4.396 5 H 0.096 0.904 6 C -0.166 4.166 7 N -0.542 5.542 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.193 1.193 12 C 0.029 3.971 13 C -0.193 4.193 14 C -0.003 4.003 15 N -0.375 5.375 16 C 0.322 3.678 17 O -0.416 6.416 18 C -0.163 4.163 19 H 0.141 0.859 20 C -0.137 4.137 21 C -0.202 4.202 22 C -0.168 4.168 23 C -0.150 4.150 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.629 0.614 19.182 20.653 hybrid contribution 0.952 -1.381 -0.309 1.705 sum 8.581 -0.766 18.873 20.746 Atomic orbital electron populations 1.22245 0.99004 0.99418 1.01657 1.21125 0.92625 0.86761 0.98977 1.44173 1.74449 1.11287 1.02814 1.18802 1.33263 0.97157 0.90335 0.90386 1.25494 0.97820 0.97980 0.95288 1.69879 1.44181 1.40740 0.99360 0.86912 0.79916 0.83887 0.78488 1.21541 1.23055 1.19306 1.20771 0.92089 0.96831 0.87449 1.22525 1.03009 0.99439 0.94373 1.21467 0.82796 1.00884 0.95124 1.46105 1.17071 1.51156 1.23128 1.19669 0.87802 0.79574 0.80713 1.90680 1.51713 1.38288 1.60942 1.21998 0.95308 0.99363 0.99652 0.85935 1.22670 0.97553 0.96857 0.96659 1.21149 1.07157 1.06585 0.85336 1.22763 0.99426 1.00593 0.94009 1.22588 0.96680 0.98817 0.96909 0.92249 0.94295 0.93811 0.92556 0.94910 0.92733 0.94042 0.92721 0.90916 0.92477 0.91969 0.91543 0.76521 0.87597 0.87998 0.88595 0.88383 0.88555 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.23 37.16 0.38 -2.70 16 2 C 0.13 2.79 5.01 -4.04 -0.02 2.77 16 3 N -0.61 -13.92 2.08 -173.23 -0.36 -14.28 16 4 C -0.27 -7.29 9.91 -15.06 -0.15 -7.44 16 5 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 6 C 0.03 0.98 5.26 -17.43 -0.09 0.89 16 7 N -0.90 -27.19 13.97 55.49 0.78 -26.41 16 8 Si 0.88 21.70 25.05 -169.99 -4.26 17.44 16 9 H -0.29 -6.99 6.69 56.52 0.38 -6.61 16 10 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.16 2.95 5.69 -4.04 -0.02 2.92 16 13 C -0.15 -2.56 5.65 -26.73 -0.15 -2.71 16 14 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 15 N -0.72 -9.53 5.56 -60.30 -0.33 -9.87 16 16 C 0.54 7.49 7.61 -10.98 -0.08 7.41 16 17 O -0.54 -9.41 16.24 5.56 0.09 -9.32 16 18 C -0.14 -1.52 6.19 -91.78 -0.57 -2.09 16 19 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.10 -0.94 10.24 -26.70 -0.27 -1.21 16 21 C -0.20 -2.09 5.06 -154.49 -0.78 -2.87 16 22 C -0.13 -1.07 10.53 -26.73 -0.28 -1.35 16 23 C -0.11 -1.13 10.16 -26.73 -0.27 -1.41 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.06 1.33 3.60 -51.93 -0.19 1.14 16 28 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 30 H 0.04 0.71 8.05 -51.92 -0.42 0.29 16 31 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -31.98 347.63 -8.48 -40.45 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.29 Total: 2.78 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.34 Total: -6.03 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.08 Total: -50.56 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.26 Total: 17.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.98 -8.48 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479856345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.388 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds