Wall clock time and date at job start Mon Mar 30 2020 00:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47177 * 2 1 4 4 C 1.36930 * 120.00184 * 263.79007 * 3 2 1 5 5 H 1.08007 * 120.00438 * 142.61350 * 4 3 2 6 6 C 1.38817 * 120.00254 * 322.61297 * 4 3 2 7 7 N 1.31621 * 120.00282 * 157.38467 * 6 4 3 8 8 Si 1.86800 * 119.99713 * 337.39440 * 6 4 3 9 9 H 1.48495 * 109.47404 * 95.71046 * 8 6 4 10 10 H 1.48500 * 109.46778 * 215.71198 * 8 6 4 11 11 H 1.48506 * 109.47040 * 335.70794 * 8 6 4 12 12 C 1.46497 * 119.99911 * 83.79120 * 3 2 1 13 13 C 1.53001 * 109.47392 * 89.99971 * 12 3 2 14 14 C 1.53004 * 109.47372 * 180.02562 * 13 12 3 15 15 N 1.46491 * 109.47206 * 179.97438 * 14 13 12 16 16 C 1.34782 * 119.99913 * 179.97438 * 15 14 13 17 17 O 1.21273 * 119.99855 * 359.72597 * 16 15 14 18 18 C 1.50704 * 119.99707 * 179.72766 * 16 15 14 19 19 H 1.08992 * 115.55005 * 325.57992 * 18 16 15 20 20 C 1.52998 * 117.49696 * 111.25669 * 18 16 15 21 21 C 1.52989 * 117.49314 * 179.90955 * 18 16 15 22 22 C 1.52996 * 138.58383 * 121.62289 * 21 18 16 23 23 C 1.52993 * 138.59222 * 23.40815 * 21 18 16 24 24 H 1.08994 * 109.47366 * 59.99541 * 1 2 3 25 25 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47060 * 299.99757 * 1 2 3 27 27 H 1.09004 * 109.47060 * 240.00243 * 2 1 3 28 28 H 1.08998 * 109.47486 * 119.99980 * 2 1 3 29 29 H 0.96994 * 119.99701 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.47179 * 330.00042 * 12 3 2 31 31 H 1.09007 * 109.47435 * 210.00262 * 12 3 2 32 32 H 1.08993 * 109.46850 * 59.99908 * 13 12 3 33 33 H 1.08999 * 109.47067 * 299.99862 * 13 12 3 34 34 H 1.08999 * 109.46759 * 59.99627 * 14 13 12 35 35 H 1.09003 * 109.46941 * 300.00431 * 14 13 12 36 36 H 0.97006 * 120.00030 * 359.72789 * 15 14 13 37 37 H 1.09001 * 117.49677 * 214.97944 * 20 18 16 38 38 H 1.08997 * 117.50383 * 359.97438 * 20 18 16 39 39 H 1.08997 * 117.50222 * 336.58924 * 22 21 18 40 40 H 1.09002 * 117.49960 * 121.61435 * 22 21 18 41 41 H 1.08998 * 117.49896 * 238.37553 * 23 21 18 42 42 H 1.08997 * 117.49855 * 23.37354 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3675 1.9840 -1.1789 5 1 2.1496 3.0301 -1.3359 6 6 3.0016 1.2506 -2.1723 7 7 2.9449 1.6520 -3.4246 8 14 3.9353 -0.3063 -1.7320 9 1 3.0562 -1.4854 -1.9370 10 1 5.1347 -0.4262 -2.5993 11 1 4.3573 -0.2448 -0.3095 12 6 2.1331 2.1175 1.2613 13 6 3.5251 1.8959 1.8564 14 6 3.6448 2.6644 3.1740 15 7 4.9773 2.4516 3.7442 16 6 5.3119 3.0360 4.9117 17 8 4.5115 3.7419 5.4878 18 6 6.6807 2.8121 5.5013 19 1 7.1090 1.8241 5.3334 20 6 7.6409 4.0029 5.5297 21 6 7.0003 3.5047 6.8275 22 6 7.4285 3.1247 8.2463 23 6 6.2516 4.0786 8.0319 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.3883 1.1396 -4.1186 30 1 1.3776 1.7598 1.9609 31 1 1.9822 3.1811 1.0762 32 1 4.2804 2.2536 1.1568 33 1 3.6759 0.8324 2.0416 34 1 2.8893 2.3062 3.8734 35 1 3.4937 3.7280 2.9893 36 1 5.6176 1.8873 3.2832 37 1 8.7011 3.7981 5.3808 38 1 7.2829 4.9481 5.1217 39 1 7.2019 2.1144 8.5868 40 1 8.3591 3.5500 8.6220 41 1 6.4080 5.1314 8.2667 42 1 5.2506 3.6961 8.2312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479856345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:25 Heat of formation + Delta-G solvation = 16.003551 kcal Electronic energy + Delta-G solvation = -19862.120539 eV Core-core repulsion = 16843.829487 eV Total energy + Delta-G solvation = -3018.291052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01784 -38.71629 -38.21863 -36.23231 -34.01826 -33.64275 -32.76639 -30.62724 -27.51393 -25.40811 -24.51669 -23.28356 -23.16231 -21.92681 -21.26021 -20.04178 -18.70928 -18.06275 -17.31495 -17.06335 -16.60647 -16.07055 -15.89197 -15.76945 -15.28991 -15.05273 -14.95357 -14.72849 -14.15300 -13.58623 -13.51096 -13.23742 -12.99579 -12.84336 -12.65435 -12.54759 -12.48048 -12.35969 -12.13778 -11.71909 -11.51075 -11.36090 -11.19702 -11.10379 -10.94606 -10.75972 -10.62978 -10.10035 -8.78177 -8.18544 -5.56219 1.32827 1.42052 1.46082 1.53971 2.06889 2.44098 2.73508 2.87281 3.05821 3.32517 3.37142 3.78110 3.84747 4.08067 4.10534 4.21724 4.31598 4.42894 4.49461 4.60248 4.63104 4.64113 4.73764 4.74910 4.76911 4.80418 4.83108 4.93105 5.00532 5.01403 5.02689 5.17603 5.26997 5.27637 5.38748 5.46438 5.51206 5.96828 6.18979 6.54915 7.01205 7.22728 7.65708 8.07408 9.01658 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.003538 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.476393 B = 7913.145637 C = 8309.904209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 N -0.616 5.616 4 C -0.255 4.255 5 H 0.037 0.963 6 C -0.023 4.023 7 N -0.953 5.953 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.312 1.312 11 H -0.246 1.246 12 C 0.151 3.849 13 C -0.135 4.135 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.532 3.468 17 O -0.581 6.581 18 C -0.148 4.148 19 H 0.149 0.851 20 C -0.090 4.090 21 C -0.225 4.225 22 C -0.105 4.105 23 C -0.133 4.133 24 H 0.030 0.970 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.262 0.738 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -1.845 21.420 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.003 4.003 3 N -0.340 5.340 4 C -0.385 4.385 5 H 0.055 0.945 6 C -0.219 4.219 7 N -0.597 5.597 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.240 1.240 11 H -0.170 1.170 12 C 0.026 3.974 13 C -0.176 4.176 14 C 0.008 3.992 15 N -0.369 5.369 16 C 0.320 3.680 17 O -0.461 6.461 18 C -0.169 4.169 19 H 0.167 0.833 20 C -0.127 4.127 21 C -0.226 4.226 22 C -0.141 4.141 23 C -0.170 4.170 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.249 0.751 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.137 0.863 41 H 0.119 0.881 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.059 -1.369 21.663 23.521 hybrid contribution 0.394 -0.669 -1.027 1.288 sum 9.454 -2.038 20.636 22.790 Atomic orbital electron populations 1.22141 0.97184 1.01170 1.01057 1.21280 0.94195 0.85534 0.99283 1.44266 1.74863 1.12139 1.02694 1.18648 1.32140 0.95663 0.92048 0.94525 1.26126 0.98982 1.01933 0.94899 1.70018 1.46037 1.43070 1.00585 0.85828 0.77886 0.79998 0.78968 1.20623 1.24046 1.16982 1.20881 0.94277 0.95915 0.86370 1.22233 1.00696 1.00037 0.94591 1.21195 0.83984 0.99818 0.94224 1.46009 1.16662 1.51143 1.23059 1.20282 0.88800 0.78571 0.80332 1.90662 1.53270 1.40112 1.62045 1.22039 0.93606 1.01138 1.00067 0.83338 1.22759 0.98657 0.95635 0.95619 1.21427 1.07890 1.07180 0.86088 1.22864 0.99061 1.00479 0.91708 1.22608 0.96738 0.99689 0.97987 0.95101 0.91393 0.92135 0.94781 0.91795 0.92930 0.91372 0.93896 0.92852 0.91575 0.91556 0.92739 0.75084 0.84755 0.89320 0.87711 0.86290 0.88118 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 10.23 71.98 0.74 -4.75 16 2 C 0.12 4.88 5.01 86.38 0.43 5.31 16 3 N -0.62 -27.73 2.08 -701.99 -1.46 -29.19 16 4 C -0.26 -14.20 9.91 84.04 0.83 -13.37 16 5 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 6 C -0.02 -1.34 5.26 84.86 0.45 -0.89 16 7 N -0.95 -59.40 13.97 21.65 0.30 -59.10 16 8 Si 0.94 44.71 25.05 68.60 1.72 46.43 16 9 H -0.28 -12.72 6.69 99.48 0.67 -12.05 16 10 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 11 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 12 C 0.15 5.51 5.69 86.38 0.49 6.00 16 13 C -0.14 -4.27 5.65 30.60 0.17 -4.10 16 14 C 0.13 3.70 5.67 86.38 0.49 4.19 16 15 N -0.72 -17.60 5.56 -463.07 -2.57 -20.18 16 16 C 0.53 14.20 7.61 87.66 0.67 14.87 16 17 O -0.58 -20.18 16.24 -3.01 -0.05 -20.23 16 18 C -0.15 -2.82 6.19 -11.54 -0.07 -2.89 16 19 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 20 C -0.09 -1.47 10.24 30.61 0.31 -1.16 16 21 C -0.23 -4.22 5.06 -52.17 -0.26 -4.49 16 22 C -0.10 -1.42 10.53 30.59 0.32 -1.10 16 23 C -0.13 -2.56 10.16 30.59 0.31 -2.25 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 27 H 0.03 1.53 3.60 -2.39 -0.01 1.52 16 28 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 29 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.07 2.13 8.05 -2.38 -0.02 2.11 16 31 H 0.04 1.65 8.04 -2.38 -0.02 1.63 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 8.13 8.47 -92.70 -0.79 7.34 16 37 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.15 347.63 2.98 -68.17 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.16 Total: 18.72 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 4.88 Total: -4.63 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -3.73 Total: -108.46 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.72 Total: 46.43 kcal Total: -71.15 2.98 -68.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479856345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.176 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds