Wall clock time and date at job start Mon Mar 30 2020 00:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47083 * 2 1 4 4 C 1.36935 * 119.99657 * 263.77940 * 3 2 1 5 5 H 1.08001 * 119.99984 * 142.61856 * 4 3 2 6 6 C 1.38816 * 120.00399 * 322.62343 * 4 3 2 7 7 N 1.31620 * 120.00145 * 157.38862 * 6 4 3 8 8 Si 1.86798 * 119.99687 * 337.38447 * 6 4 3 9 9 H 1.48496 * 109.47368 * 95.71727 * 8 6 4 10 10 H 1.48504 * 109.47080 * 215.71897 * 8 6 4 11 11 H 1.48501 * 109.47173 * 335.71586 * 8 6 4 12 12 C 1.46498 * 120.00348 * 83.78650 * 3 2 1 13 13 C 1.52996 * 109.47231 * 89.99557 * 12 3 2 14 14 C 1.52999 * 109.47189 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47324 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00534 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00582 * 179.97438 * 16 15 14 19 19 H 1.08998 * 115.54936 * 34.27504 * 18 16 15 20 20 C 1.53003 * 117.49902 * 248.60576 * 18 16 15 21 21 C 1.52989 * 59.99954 * 252.51005 * 20 18 16 22 22 C 1.52992 * 138.59107 * 130.89647 * 21 20 18 23 23 C 1.52992 * 60.00122 * 130.89054 * 22 21 20 24 24 H 1.08998 * 109.47437 * 300.00660 * 1 2 3 25 25 H 1.09004 * 109.46634 * 60.00261 * 1 2 3 26 26 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47437 * 239.99340 * 2 1 3 28 28 H 1.09004 * 109.46634 * 119.99739 * 2 1 3 29 29 H 0.96998 * 119.99697 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47072 * 209.99680 * 12 3 2 31 31 H 1.08999 * 109.46670 * 330.00025 * 12 3 2 32 32 H 1.09001 * 109.47425 * 300.00572 * 13 12 3 33 33 H 1.09006 * 109.47200 * 59.99987 * 13 12 3 34 34 H 1.09003 * 109.47322 * 299.99739 * 14 13 12 35 35 H 1.08994 * 109.47436 * 60.00156 * 14 13 12 36 36 H 0.97010 * 119.99967 * 359.97438 * 15 14 13 37 37 H 1.09001 * 117.49940 * 0.02562 * 20 18 16 38 38 H 1.09002 * 117.49873 * 144.99284 * 20 18 16 39 39 H 1.09000 * 117.49771 * 238.38449 * 22 21 20 40 40 H 1.08999 * 117.49746 * 23.40051 * 22 21 20 41 41 H 1.09004 * 117.50001 * 252.51117 * 23 22 21 42 42 H 1.09003 * 117.52317 * 107.48377 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3677 1.9839 -1.1789 5 1 2.1498 3.0299 -1.3360 6 6 3.0018 1.2503 -2.1723 7 7 2.9452 1.6516 -3.4245 8 14 3.9354 -0.3065 -1.7317 9 1 3.0564 -1.4857 -1.9367 10 1 5.1349 -0.4266 -2.5990 11 1 4.3573 -0.2449 -0.3092 12 6 2.1331 2.1177 1.2612 13 6 3.5249 1.8960 1.8565 14 6 3.6445 2.6646 3.1740 15 7 4.9775 2.4528 3.7437 16 6 5.3118 3.0365 4.9115 17 8 4.5092 3.7376 5.4907 18 6 6.6828 2.8182 5.4978 19 1 7.4926 2.7182 4.7752 20 6 6.7782 1.9954 6.7842 21 6 7.0014 3.5083 6.8256 22 6 6.5250 4.7168 7.6339 23 6 8.0196 4.5031 7.3864 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.3880 1.1388 -4.1186 30 1 1.9823 3.1811 1.0760 31 1 1.3776 1.7599 1.9608 32 1 3.6758 0.8325 2.0417 33 1 4.2805 2.2536 1.1569 34 1 3.4936 3.7282 2.9892 35 1 2.8891 2.3066 3.8734 36 1 5.6193 1.8918 3.2806 37 1 5.8493 1.6116 7.2062 38 1 7.6508 1.3540 6.9078 39 1 6.0352 5.5246 7.0901 40 1 6.1503 4.5328 8.6408 41 1 8.6282 4.1784 8.2304 42 1 8.5136 5.1700 6.6797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479856352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:28 Heat of formation + Delta-G solvation = 35.882536 kcal Electronic energy + Delta-G solvation = -19861.079909 eV Core-core repulsion = 16843.650875 eV Total energy + Delta-G solvation = -3017.429034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99687 -37.75011 -36.65128 -34.90902 -32.90560 -31.96959 -31.33292 -28.98424 -25.99883 -23.96279 -23.05808 -22.60199 -21.79987 -20.69633 -19.93078 -19.12519 -17.06951 -16.74400 -15.97033 -15.54064 -15.29128 -15.19874 -14.79560 -14.60102 -13.91624 -13.81702 -13.17336 -13.05416 -12.63590 -12.40472 -11.99639 -11.85523 -11.75636 -11.66570 -11.34278 -11.24716 -10.97439 -10.78182 -10.44468 -10.39502 -10.32873 -10.22376 -10.00424 -9.77241 -9.72780 -9.49713 -8.94738 -8.54922 -6.87069 -6.01839 -3.42536 2.47281 3.04702 3.28477 3.42864 3.47054 3.51190 3.65918 4.06967 4.49482 4.54812 4.61275 4.91484 4.93685 5.20242 5.23234 5.32446 5.38846 5.41801 5.43575 5.45107 5.62493 5.72417 5.73268 5.79537 5.92385 5.96611 6.03841 6.09500 6.25039 6.31354 6.35975 6.50607 6.58979 6.72345 6.79229 6.89432 7.06427 7.58215 8.04273 8.28033 8.36828 8.97370 9.69378 10.10788 11.13999 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.003520 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.132871 B = 7951.978933 C = 8264.522422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.605 5.605 4 C -0.267 4.267 5 H 0.079 0.921 6 C 0.035 3.965 7 N -0.900 5.900 8 Si 0.878 3.122 9 H -0.287 1.287 10 H -0.302 1.302 11 H -0.268 1.268 12 C 0.156 3.844 13 C -0.153 4.153 14 C 0.121 3.879 15 N -0.724 5.724 16 C 0.537 3.463 17 O -0.539 6.539 18 C -0.142 4.142 19 H 0.124 0.876 20 C -0.101 4.101 21 C -0.201 4.201 22 C -0.113 4.113 23 C -0.131 4.131 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.401 0.599 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -0.149 19.146 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.327 5.327 4 C -0.396 4.396 5 H 0.096 0.904 6 C -0.166 4.166 7 N -0.542 5.542 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.193 1.193 12 C 0.029 3.971 13 C -0.193 4.193 14 C -0.003 4.003 15 N -0.374 5.374 16 C 0.322 3.678 17 O -0.416 6.416 18 C -0.163 4.163 19 H 0.141 0.859 20 C -0.138 4.138 21 C -0.202 4.202 22 C -0.150 4.150 23 C -0.168 4.168 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.235 0.765 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.515 0.350 19.349 20.760 hybrid contribution 0.984 -1.304 -0.355 1.672 sum 8.499 -0.955 18.994 20.831 Atomic orbital electron populations 1.22246 0.99005 0.99419 1.01657 1.21125 0.92624 0.86756 0.98978 1.44175 1.74448 1.11288 1.02814 1.18803 1.33270 0.97161 0.90343 0.90390 1.25493 0.97816 0.97986 0.95287 1.69879 1.44210 1.40712 0.99360 0.86910 0.79912 0.83878 0.78492 1.21533 1.23060 1.19299 1.20767 0.92092 0.96828 0.87451 1.22525 1.03002 0.99459 0.94363 1.21468 0.82806 1.00867 0.95128 1.46104 1.17052 1.51164 1.23126 1.19667 0.87835 0.79527 0.80730 1.90685 1.51807 1.38385 1.60767 1.22003 0.96547 1.06197 0.91574 0.85866 1.22649 1.03345 0.91091 0.96723 1.21133 1.07907 0.92654 0.98499 1.22591 0.95758 0.96918 0.99723 1.22766 0.92594 0.99486 1.01924 0.93801 0.92259 0.94292 0.92558 0.94903 0.92733 0.92728 0.94032 0.92449 0.90942 0.91566 0.91940 0.76519 0.88104 0.87638 0.88150 0.88581 0.88396 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.23 37.16 0.38 -2.70 16 2 C 0.13 2.79 5.01 -4.04 -0.02 2.77 16 3 N -0.61 -13.92 2.08 -173.24 -0.36 -14.28 16 4 C -0.27 -7.30 9.91 -15.06 -0.15 -7.45 16 5 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.03 0.98 5.26 -17.43 -0.09 0.89 16 7 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 8 Si 0.88 21.70 25.05 -169.99 -4.26 17.44 16 9 H -0.29 -6.98 6.69 56.52 0.38 -6.60 16 10 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.16 2.95 5.69 -4.04 -0.02 2.92 16 13 C -0.15 -2.56 5.65 -26.73 -0.15 -2.72 16 14 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 15 N -0.72 -9.53 5.56 -60.30 -0.33 -9.87 16 16 C 0.54 7.49 7.61 -10.99 -0.08 7.41 16 17 O -0.54 -9.41 16.25 5.55 0.09 -9.32 16 18 C -0.14 -1.52 6.19 -91.77 -0.57 -2.09 16 19 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 20 C -0.10 -0.92 10.23 -26.74 -0.27 -1.19 16 21 C -0.20 -2.09 5.05 -154.52 -0.78 -2.87 16 22 C -0.11 -1.14 10.16 -26.74 -0.27 -1.41 16 23 C -0.13 -1.08 10.53 -26.74 -0.28 -1.36 16 24 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.33 3.60 -51.93 -0.19 1.14 16 28 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -32.00 347.63 -8.48 -40.48 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.29 Total: 2.78 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.34 Total: -6.04 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.08 Total: -50.57 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.26 Total: 17.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.00 -8.48 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479856352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.360 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds