Wall clock time and date at job start Mon Mar 30 2020 00:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47083 * 2 1 4 4 C 1.36935 * 119.99657 * 263.77940 * 3 2 1 5 5 H 1.08001 * 119.99984 * 142.61856 * 4 3 2 6 6 C 1.38816 * 120.00399 * 322.62343 * 4 3 2 7 7 N 1.31620 * 120.00145 * 157.38862 * 6 4 3 8 8 Si 1.86798 * 119.99687 * 337.38447 * 6 4 3 9 9 H 1.48496 * 109.47368 * 95.71727 * 8 6 4 10 10 H 1.48504 * 109.47080 * 215.71897 * 8 6 4 11 11 H 1.48501 * 109.47173 * 335.71586 * 8 6 4 12 12 C 1.46498 * 120.00348 * 83.78650 * 3 2 1 13 13 C 1.52996 * 109.47231 * 89.99557 * 12 3 2 14 14 C 1.52999 * 109.47189 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47324 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00534 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00582 * 179.97438 * 16 15 14 19 19 H 1.08998 * 115.54936 * 34.27504 * 18 16 15 20 20 C 1.53003 * 117.49902 * 248.60576 * 18 16 15 21 21 C 1.52989 * 59.99954 * 252.51005 * 20 18 16 22 22 C 1.52992 * 138.59107 * 130.89647 * 21 20 18 23 23 C 1.52992 * 60.00122 * 130.89054 * 22 21 20 24 24 H 1.08998 * 109.47437 * 300.00660 * 1 2 3 25 25 H 1.09004 * 109.46634 * 60.00261 * 1 2 3 26 26 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47437 * 239.99340 * 2 1 3 28 28 H 1.09004 * 109.46634 * 119.99739 * 2 1 3 29 29 H 0.96998 * 119.99697 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47072 * 209.99680 * 12 3 2 31 31 H 1.08999 * 109.46670 * 330.00025 * 12 3 2 32 32 H 1.09001 * 109.47425 * 300.00572 * 13 12 3 33 33 H 1.09006 * 109.47200 * 59.99987 * 13 12 3 34 34 H 1.09003 * 109.47322 * 299.99739 * 14 13 12 35 35 H 1.08994 * 109.47436 * 60.00156 * 14 13 12 36 36 H 0.97010 * 119.99967 * 359.97438 * 15 14 13 37 37 H 1.09001 * 117.49940 * 0.02562 * 20 18 16 38 38 H 1.09002 * 117.49873 * 144.99284 * 20 18 16 39 39 H 1.09000 * 117.49771 * 238.38449 * 22 21 20 40 40 H 1.08999 * 117.49746 * 23.40051 * 22 21 20 41 41 H 1.09004 * 117.50001 * 252.51117 * 23 22 21 42 42 H 1.09003 * 117.52317 * 107.48377 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3677 1.9839 -1.1789 5 1 2.1498 3.0299 -1.3360 6 6 3.0018 1.2503 -2.1723 7 7 2.9452 1.6516 -3.4245 8 14 3.9354 -0.3065 -1.7317 9 1 3.0564 -1.4857 -1.9367 10 1 5.1349 -0.4266 -2.5990 11 1 4.3573 -0.2449 -0.3092 12 6 2.1331 2.1177 1.2612 13 6 3.5249 1.8960 1.8565 14 6 3.6445 2.6646 3.1740 15 7 4.9775 2.4528 3.7437 16 6 5.3118 3.0365 4.9115 17 8 4.5092 3.7376 5.4907 18 6 6.6828 2.8182 5.4978 19 1 7.4926 2.7182 4.7752 20 6 6.7782 1.9954 6.7842 21 6 7.0014 3.5083 6.8256 22 6 6.5250 4.7168 7.6339 23 6 8.0196 4.5031 7.3864 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.3880 1.1388 -4.1186 30 1 1.9823 3.1811 1.0760 31 1 1.3776 1.7599 1.9608 32 1 3.6758 0.8325 2.0417 33 1 4.2805 2.2536 1.1569 34 1 3.4936 3.7282 2.9892 35 1 2.8891 2.3066 3.8734 36 1 5.6193 1.8918 3.2806 37 1 5.8493 1.6116 7.2062 38 1 7.6508 1.3540 6.9078 39 1 6.0352 5.5246 7.0901 40 1 6.1503 4.5328 8.6408 41 1 8.6282 4.1784 8.2304 42 1 8.5136 5.1700 6.6797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479856352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:28 Heat of formation + Delta-G solvation = 15.911363 kcal Electronic energy + Delta-G solvation = -19861.945924 eV Core-core repulsion = 16843.650875 eV Total energy + Delta-G solvation = -3018.295049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01601 -38.71729 -38.21822 -36.23030 -34.01933 -33.64327 -32.76634 -30.62670 -27.51431 -25.40721 -24.51327 -23.28672 -23.16102 -21.92699 -21.25790 -20.04350 -18.71085 -18.06381 -17.31179 -17.05128 -16.63036 -16.05504 -15.89026 -15.77107 -15.31475 -14.99196 -14.95916 -14.77179 -14.13654 -13.58520 -13.50344 -13.24748 -12.99457 -12.84082 -12.64976 -12.54731 -12.47989 -12.36384 -12.13831 -11.71901 -11.51097 -11.35992 -11.19810 -11.10053 -10.94622 -10.76063 -10.63079 -10.10050 -8.78189 -8.18657 -5.56366 1.32788 1.42024 1.46120 1.53968 2.07418 2.43999 2.73556 2.86952 3.05744 3.32638 3.37142 3.77969 3.85095 4.08192 4.10796 4.21917 4.31689 4.42909 4.49562 4.60351 4.63198 4.64032 4.73945 4.74747 4.76788 4.80869 4.82960 4.93229 5.00633 5.01213 5.03340 5.17818 5.26707 5.27657 5.38709 5.46458 5.51310 5.96701 6.18839 6.54934 7.01165 7.22797 7.65665 8.07273 9.01534 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.003520 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.132871 B = 7951.978933 C = 8264.522422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 N -0.616 5.616 4 C -0.255 4.255 5 H 0.037 0.963 6 C -0.023 4.023 7 N -0.953 5.953 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.312 1.312 11 H -0.246 1.246 12 C 0.151 3.849 13 C -0.135 4.135 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.533 3.467 17 O -0.581 6.581 18 C -0.151 4.151 19 H 0.146 0.854 20 C -0.084 4.084 21 C -0.226 4.226 22 C -0.133 4.133 23 C -0.107 4.107 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.262 0.738 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 -2.235 21.670 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.003 4.003 3 N -0.340 5.340 4 C -0.385 4.385 5 H 0.054 0.946 6 C -0.219 4.219 7 N -0.597 5.597 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.241 1.241 11 H -0.170 1.170 12 C 0.026 3.974 13 C -0.176 4.176 14 C 0.008 3.992 15 N -0.369 5.369 16 C 0.320 3.680 17 O -0.461 6.461 18 C -0.171 4.171 19 H 0.164 0.836 20 C -0.121 4.121 21 C -0.227 4.227 22 C -0.170 4.170 23 C -0.143 4.143 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.249 0.751 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.895 -1.759 21.913 23.715 hybrid contribution 0.444 -0.553 -1.102 1.310 sum 9.339 -2.311 20.811 22.927 Atomic orbital electron populations 1.22143 0.97186 1.01174 1.01052 1.21282 0.94193 0.85517 0.99296 1.44267 1.74863 1.12149 1.02685 1.18649 1.32162 0.95662 0.92072 0.94556 1.26128 0.98971 1.01955 0.94893 1.70019 1.46066 1.43045 1.00589 0.85825 0.77874 0.79982 0.78978 1.20588 1.24065 1.16957 1.20877 0.94288 0.95895 0.86379 1.22234 1.00679 1.00072 0.94573 1.21195 0.84009 0.99767 0.94245 1.46010 1.16644 1.51141 1.23073 1.20277 0.88833 0.78517 0.80341 1.90667 1.53384 1.40185 1.61881 1.22040 0.94900 1.07737 0.92459 0.83613 1.22753 1.04095 0.90635 0.94600 1.21425 1.09298 0.93641 0.98315 1.22599 0.97709 0.96733 0.99932 1.22857 0.91446 0.97913 1.02114 0.92118 0.95129 0.91381 0.94786 0.91761 0.92930 0.93938 0.91332 0.91516 0.92911 0.92820 0.91472 0.75090 0.88956 0.84691 0.90274 0.87906 0.86168 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 10.23 71.98 0.74 -4.75 16 2 C 0.12 4.87 5.01 86.38 0.43 5.30 16 3 N -0.62 -27.73 2.08 -702.02 -1.46 -29.20 16 4 C -0.26 -14.25 9.91 84.03 0.83 -13.41 16 5 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 6 C -0.02 -1.35 5.26 84.86 0.45 -0.90 16 7 N -0.95 -59.46 13.97 21.65 0.30 -59.15 16 8 Si 0.95 44.72 25.05 68.60 1.72 46.44 16 9 H -0.28 -12.69 6.69 99.48 0.67 -12.03 16 10 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 11 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 12 C 0.15 5.52 5.69 86.38 0.49 6.01 16 13 C -0.14 -4.27 5.65 30.59 0.17 -4.10 16 14 C 0.13 3.70 5.67 86.38 0.49 4.19 16 15 N -0.72 -17.62 5.56 -463.07 -2.57 -20.19 16 16 C 0.53 14.21 7.61 87.66 0.67 14.88 16 17 O -0.58 -20.20 16.25 -3.07 -0.05 -20.25 16 18 C -0.15 -2.88 6.19 -11.54 -0.07 -2.95 16 19 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 20 C -0.08 -1.29 10.23 30.59 0.31 -0.98 16 21 C -0.23 -4.24 5.05 -52.19 -0.26 -4.50 16 22 C -0.13 -2.58 10.16 30.59 0.31 -2.27 16 23 C -0.11 -1.50 10.53 30.59 0.32 -1.18 16 24 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 25 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.03 1.52 3.60 -2.39 -0.01 1.52 16 28 H 0.06 2.19 8.12 -2.38 -0.02 2.17 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 31 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 8.14 8.47 -92.70 -0.79 7.36 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -71.29 347.63 2.98 -68.31 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.16 Total: 18.68 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 4.88 Total: -4.65 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -3.73 Total: -108.54 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.72 Total: 46.44 kcal Total: -71.29 2.98 -68.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479856352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.225 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds