Wall clock time and date at job start Mon Mar 30 2020 01:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99700 * 2 1 4 4 H 1.07997 * 120.00041 * 203.04600 * 3 2 1 5 5 C 1.38812 * 119.99928 * 23.04167 * 3 2 1 6 6 N 1.31617 * 120.00146 * 12.93252 * 5 3 2 7 7 Si 1.86805 * 119.99924 * 192.92881 * 5 3 2 8 8 H 1.48503 * 109.47045 * 90.00219 * 7 5 3 9 9 H 1.48498 * 109.47057 * 210.00209 * 7 5 3 10 10 H 1.48506 * 109.47123 * 330.00376 * 7 5 3 11 11 C 1.46493 * 120.00345 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47296 * 90.00431 * 11 2 1 13 13 N 1.46500 * 109.47517 * 180.02562 * 12 11 2 14 14 C 1.34771 * 120.00207 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00153 * 179.97438 * 14 13 12 17 17 C 1.51879 * 108.55329 * 55.95408 * 16 14 13 18 18 C 1.53028 * 110.75665 * 187.50789 * 17 16 14 19 19 C 1.51378 * 108.61755 * 274.28584 * 18 17 16 20 20 C 1.29528 * 120.36048 * 71.91852 * 19 18 17 21 21 C 1.51376 * 120.35913 * 359.97438 * 20 19 18 22 22 C 1.51844 * 108.65208 * 180.02562 * 16 14 13 23 23 H 1.08994 * 109.47174 * 275.12322 * 1 2 3 24 24 H 1.08997 * 109.47179 * 35.12670 * 1 2 3 25 25 H 1.09008 * 109.46548 * 155.12934 * 1 2 3 26 26 H 0.97003 * 119.99950 * 179.97438 * 6 5 3 27 27 H 1.08998 * 109.47140 * 330.00013 * 11 2 1 28 28 H 1.09005 * 109.47439 * 210.00178 * 11 2 1 29 29 H 1.08998 * 109.47367 * 59.99721 * 12 11 2 30 30 H 1.09009 * 109.47033 * 299.99869 * 12 11 2 31 31 H 0.97005 * 120.00059 * 359.97438 * 13 12 11 32 32 H 1.08995 * 108.60614 * 298.02259 * 16 14 13 33 33 H 1.09005 * 109.20151 * 67.18613 * 17 16 14 34 34 H 1.09005 * 109.23364 * 307.84470 * 17 16 14 35 35 H 1.08994 * 109.61448 * 154.55116 * 18 17 16 36 36 H 1.09000 * 109.61410 * 34.02135 * 18 17 16 37 37 H 1.07993 * 119.81992 * 251.90239 * 19 18 17 38 38 H 1.07994 * 119.81926 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.61179 * 47.84106 * 21 20 19 40 40 H 1.09000 * 109.61356 * 168.18394 * 21 20 19 41 41 H 1.09003 * 109.21980 * 52.20857 * 22 16 14 42 42 H 1.08997 * 109.22473 * 292.86749 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4705 6 7 0.4116 2.2597 1.1457 7 14 2.3157 4.0074 0.1455 8 1 1.7986 4.5534 -1.1351 9 1 1.9756 4.9364 1.2529 10 1 3.7907 3.8579 0.0601 11 6 2.1975 -1.2686 0.0006 12 6 2.4527 -1.7109 -1.4417 13 7 3.1847 -2.9799 -1.4412 14 6 3.5212 -3.5642 -2.6081 15 8 3.2184 -3.0394 -3.6587 16 6 4.2748 -4.8693 -2.6075 17 6 3.4835 -5.8839 -1.8005 18 6 4.2880 -7.1716 -1.6099 19 6 4.0663 -8.0625 -2.8135 20 6 4.5932 -7.7604 -3.9576 21 6 5.4368 -6.5122 -4.1057 22 6 4.5176 -5.2905 -4.0461 23 1 -0.3633 0.0918 1.0235 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3633 -0.9325 -0.4323 26 1 -0.0152 3.0662 1.4749 27 1 1.6085 -2.0281 0.5147 28 1 3.1500 -1.1381 0.5144 29 1 3.0417 -0.9515 -1.9559 30 1 1.5002 -1.8415 -1.9556 31 1 3.4273 -3.3996 -0.6009 32 1 5.2385 -4.7142 -2.1227 33 1 2.5561 -6.1144 -2.3248 34 1 3.2473 -5.4605 -0.8241 35 1 3.9509 -7.6837 -0.7087 36 1 5.3477 -6.9315 -1.5227 37 1 3.4659 -8.9550 -2.7177 38 1 4.4297 -8.4024 -4.8104 39 1 6.1631 -6.4631 -3.2944 40 1 5.9583 -6.5345 -5.0626 41 1 4.9805 -4.4659 -4.5881 42 1 3.5642 -5.5361 -4.5139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480947687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:55 Heat of formation + Delta-G solvation = -15.518198 kcal Electronic energy + Delta-G solvation = -20215.447722 eV Core-core repulsion = 17195.789785 eV Total energy + Delta-G solvation = -3019.657937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15958 -37.96136 -36.04473 -34.20730 -32.88598 -32.01264 -31.22629 -28.23723 -26.04980 -25.76579 -24.15568 -23.23845 -21.38410 -20.64924 -19.68153 -18.23761 -17.25365 -16.65973 -16.40065 -15.64622 -15.09986 -14.72638 -14.68362 -13.90631 -13.76065 -13.57880 -13.33754 -13.18017 -12.93424 -12.39042 -12.36706 -12.21082 -11.87897 -11.47493 -11.17230 -10.94792 -10.86903 -10.86639 -10.80354 -10.58585 -10.52321 -10.34279 -9.95126 -9.92484 -9.59753 -9.19304 -8.67036 -8.56134 -6.79800 -5.74282 -3.22557 2.08008 2.86457 3.38535 3.42431 3.45709 3.48107 4.39296 4.49566 4.59044 4.66843 4.83810 4.90014 4.97961 5.19464 5.27985 5.33594 5.39693 5.45806 5.54324 5.62459 5.63347 5.75676 5.81814 5.87880 5.95990 5.97900 6.05286 6.22241 6.26290 6.45150 6.62566 6.66183 6.69176 6.76938 6.91144 7.36390 7.70714 7.78747 7.79893 8.36946 8.49337 9.21128 9.83525 10.31692 11.30507 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.003343 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.346794 B = 8373.929972 C = 8710.982443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.724 5.724 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.103 4.103 17 C -0.107 4.107 18 C -0.090 4.090 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.092 4.092 22 C -0.095 4.095 23 H 0.033 0.967 24 H 0.042 0.958 25 H -0.001 1.001 26 H 0.253 0.747 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.309 -20.274 -5.204 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.375 5.375 14 C 0.293 3.707 15 O -0.422 6.422 16 C -0.125 4.125 17 C -0.145 4.145 18 C -0.127 4.127 19 C -0.179 4.179 20 C -0.174 4.174 21 C -0.130 4.130 22 C -0.133 4.133 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.940 -19.690 -5.856 22.024 hybrid contribution 0.348 0.739 0.207 0.843 sum 8.288 -18.951 -5.649 21.442 Atomic orbital electron populations 1.20836 0.82331 0.95583 0.99594 1.43782 1.01945 1.00333 1.85980 1.19208 0.98392 0.85545 1.35802 0.91326 1.25032 0.97844 0.98615 0.97985 1.70072 1.19414 1.27289 1.38346 0.86227 0.78791 0.83921 0.77430 1.21391 1.21708 1.20425 1.20835 0.96670 0.89133 0.91807 1.22404 0.95627 0.83207 1.01957 1.46135 1.58246 1.25057 1.08104 1.20704 0.79704 0.86341 0.83971 1.90691 1.54732 1.65381 1.31373 1.21031 0.99825 0.92991 0.98607 1.21307 0.99001 0.94301 0.99851 1.20813 1.00552 0.94730 0.96629 1.22545 1.00576 0.99607 0.95176 1.22584 0.99245 0.97877 0.97668 1.20847 0.97214 0.92628 1.02278 1.21076 1.00630 0.97106 0.94453 0.94866 0.93949 0.98292 0.93686 0.94151 0.92997 0.91672 0.92361 0.77067 0.88989 0.91141 0.91054 0.91114 0.90826 0.87624 0.87647 0.91023 0.91273 0.90679 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.98 59.85 0.54 4.55 16 2 N -0.60 -15.09 2.92 -181.13 -0.53 -15.62 16 3 C -0.26 -7.20 9.65 -15.06 -0.15 -7.35 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.54 10.71 55.49 0.59 -25.95 16 7 Si 0.91 22.06 29.57 -169.99 -5.03 17.03 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.86 5.76 -4.05 -0.02 2.84 16 12 C 0.09 1.74 6.00 -4.04 -0.02 1.72 16 13 N -0.72 -10.45 5.36 -60.29 -0.32 -10.77 16 14 C 0.51 7.59 7.14 -10.99 -0.08 7.51 16 15 O -0.54 -10.58 15.76 5.56 0.09 -10.49 16 16 C -0.10 -1.09 2.06 -92.93 -0.19 -1.28 16 17 C -0.11 -0.95 4.86 -27.29 -0.13 -1.08 16 18 C -0.09 -0.66 5.62 -27.54 -0.15 -0.82 16 19 C -0.16 -1.26 9.34 -35.28 -0.33 -1.59 16 20 C -0.16 -1.26 9.34 -35.28 -0.33 -1.59 16 21 C -0.09 -0.76 5.61 -27.55 -0.15 -0.92 16 22 C -0.09 -1.01 4.30 -27.31 -0.12 -1.13 16 23 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H 0.00 -0.03 8.03 -51.92 -0.42 -0.45 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 31 H 0.40 4.44 7.48 -40.82 -0.31 4.14 16 32 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 33 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.07 0.57 6.99 -51.93 -0.36 0.20 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.51 6.68 -51.93 -0.35 0.16 16 37 H 0.11 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.90 7.78 -51.93 -0.40 0.49 16 42 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -32.13 332.30 -8.51 -40.64 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.09 Total: -0.73 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.23 Total: 0.88 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.26 Total: -52.34 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.13 -8.51 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480947687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.126 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds