Wall clock time and date at job start Mon Mar 30 2020 01:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99700 * 2 1 4 4 H 1.07997 * 120.00041 * 203.04600 * 3 2 1 5 5 C 1.38812 * 119.99928 * 23.04167 * 3 2 1 6 6 N 1.31617 * 120.00146 * 12.93252 * 5 3 2 7 7 Si 1.86805 * 119.99924 * 192.92881 * 5 3 2 8 8 H 1.48503 * 109.47045 * 90.00219 * 7 5 3 9 9 H 1.48498 * 109.47057 * 210.00209 * 7 5 3 10 10 H 1.48506 * 109.47123 * 330.00376 * 7 5 3 11 11 C 1.46493 * 120.00345 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47296 * 90.00431 * 11 2 1 13 13 N 1.46500 * 109.47517 * 180.02562 * 12 11 2 14 14 C 1.34771 * 120.00207 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00153 * 179.97438 * 14 13 12 17 17 C 1.51879 * 108.55329 * 55.95408 * 16 14 13 18 18 C 1.53028 * 110.75665 * 187.50789 * 17 16 14 19 19 C 1.51378 * 108.61755 * 274.28584 * 18 17 16 20 20 C 1.29528 * 120.36048 * 71.91852 * 19 18 17 21 21 C 1.51376 * 120.35913 * 359.97438 * 20 19 18 22 22 C 1.51844 * 108.65208 * 180.02562 * 16 14 13 23 23 H 1.08994 * 109.47174 * 275.12322 * 1 2 3 24 24 H 1.08997 * 109.47179 * 35.12670 * 1 2 3 25 25 H 1.09008 * 109.46548 * 155.12934 * 1 2 3 26 26 H 0.97003 * 119.99950 * 179.97438 * 6 5 3 27 27 H 1.08998 * 109.47140 * 330.00013 * 11 2 1 28 28 H 1.09005 * 109.47439 * 210.00178 * 11 2 1 29 29 H 1.08998 * 109.47367 * 59.99721 * 12 11 2 30 30 H 1.09009 * 109.47033 * 299.99869 * 12 11 2 31 31 H 0.97005 * 120.00059 * 359.97438 * 13 12 11 32 32 H 1.08995 * 108.60614 * 298.02259 * 16 14 13 33 33 H 1.09005 * 109.20151 * 67.18613 * 17 16 14 34 34 H 1.09005 * 109.23364 * 307.84470 * 17 16 14 35 35 H 1.08994 * 109.61448 * 154.55116 * 18 17 16 36 36 H 1.09000 * 109.61410 * 34.02135 * 18 17 16 37 37 H 1.07993 * 119.81992 * 251.90239 * 19 18 17 38 38 H 1.07994 * 119.81926 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.61179 * 47.84106 * 21 20 19 40 40 H 1.09000 * 109.61356 * 168.18394 * 21 20 19 41 41 H 1.09003 * 109.21980 * 52.20857 * 22 16 14 42 42 H 1.08997 * 109.22473 * 292.86749 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4705 6 7 0.4116 2.2597 1.1457 7 14 2.3157 4.0074 0.1455 8 1 1.7986 4.5534 -1.1351 9 1 1.9756 4.9364 1.2529 10 1 3.7907 3.8579 0.0601 11 6 2.1975 -1.2686 0.0006 12 6 2.4527 -1.7109 -1.4417 13 7 3.1847 -2.9799 -1.4412 14 6 3.5212 -3.5642 -2.6081 15 8 3.2184 -3.0394 -3.6587 16 6 4.2748 -4.8693 -2.6075 17 6 3.4835 -5.8839 -1.8005 18 6 4.2880 -7.1716 -1.6099 19 6 4.0663 -8.0625 -2.8135 20 6 4.5932 -7.7604 -3.9576 21 6 5.4368 -6.5122 -4.1057 22 6 4.5176 -5.2905 -4.0461 23 1 -0.3633 0.0918 1.0235 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3633 -0.9325 -0.4323 26 1 -0.0152 3.0662 1.4749 27 1 1.6085 -2.0281 0.5147 28 1 3.1500 -1.1381 0.5144 29 1 3.0417 -0.9515 -1.9559 30 1 1.5002 -1.8415 -1.9556 31 1 3.4273 -3.3996 -0.6009 32 1 5.2385 -4.7142 -2.1227 33 1 2.5561 -6.1144 -2.3248 34 1 3.2473 -5.4605 -0.8241 35 1 3.9509 -7.6837 -0.7087 36 1 5.3477 -6.9315 -1.5227 37 1 3.4659 -8.9550 -2.7177 38 1 4.4297 -8.4024 -4.8104 39 1 6.1631 -6.4631 -3.2944 40 1 5.9583 -6.5345 -5.0626 41 1 4.9805 -4.4659 -4.5881 42 1 3.5642 -5.5361 -4.5139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480947687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:55 Heat of formation + Delta-G solvation = -35.360599 kcal Electronic energy + Delta-G solvation = -20216.308153 eV Core-core repulsion = 17195.789785 eV Total energy + Delta-G solvation = -3020.518368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25984 -38.88336 -37.81680 -35.75813 -33.83145 -33.13963 -32.65163 -29.83276 -27.94403 -26.86338 -25.08410 -24.64895 -22.47279 -22.35527 -20.79225 -18.86726 -18.78732 -18.20067 -17.38558 -17.01710 -16.54748 -16.30607 -15.69241 -15.37490 -15.14273 -14.87701 -14.52988 -14.29791 -14.14181 -13.81860 -13.68730 -13.13050 -13.04487 -12.82244 -12.70009 -12.59644 -12.48457 -12.18976 -12.12280 -11.97648 -11.79753 -11.72771 -11.48805 -11.19266 -10.83148 -10.65619 -10.07100 -9.84820 -8.84977 -7.86203 -5.36835 1.45191 1.47688 1.47767 1.55641 1.66749 2.19226 2.52075 3.27729 3.60571 3.69208 3.83056 3.88874 4.14864 4.22049 4.24362 4.26674 4.33195 4.50328 4.55473 4.64812 4.65179 4.74023 4.80221 4.92912 4.96270 5.04263 5.09040 5.14021 5.20743 5.26720 5.30995 5.34321 5.43460 5.51766 5.60911 5.67880 5.86089 6.10658 6.29662 6.61472 7.11364 7.30650 7.81893 8.24735 9.16900 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.003343 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.346794 B = 8373.929972 C = 8710.982443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.269 4.269 4 H 0.070 0.930 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.267 1.267 11 C 0.148 3.852 12 C 0.115 3.885 13 N -0.711 5.711 14 C 0.504 3.496 15 O -0.594 6.594 16 C -0.091 4.091 17 C -0.103 4.103 18 C -0.087 4.087 19 C -0.164 4.164 20 C -0.168 4.168 21 C -0.086 4.086 22 C -0.093 4.093 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.030 0.970 26 H 0.250 0.750 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.415 0.585 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.863 -22.024 -4.532 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.399 4.399 4 H 0.088 0.912 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.192 1.192 11 C 0.021 3.979 12 C -0.012 4.012 13 N -0.364 5.364 14 C 0.291 3.709 15 O -0.475 6.475 16 C -0.113 4.113 17 C -0.141 4.141 18 C -0.124 4.124 19 C -0.182 4.182 20 C -0.186 4.186 21 C -0.123 4.123 22 C -0.131 4.131 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.253 0.747 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.531 -21.497 -5.163 24.075 hybrid contribution -0.139 1.209 -0.042 1.217 sum 9.392 -20.288 -5.205 22.954 Atomic orbital electron populations 1.20592 0.82609 0.95906 0.97989 1.44025 1.02236 1.01602 1.86160 1.19513 0.98560 0.86858 1.35011 0.91237 1.25787 0.98581 1.01877 0.98286 1.70218 1.20704 1.27748 1.39521 0.85252 0.78517 0.79785 0.76802 1.21618 1.21769 1.19189 1.20950 0.96879 0.87582 0.92520 1.21836 0.94706 0.84351 1.00356 1.45916 1.57545 1.23618 1.09271 1.21574 0.78957 0.87330 0.82993 1.90674 1.56680 1.66935 1.33179 1.21073 1.00422 0.90644 0.99116 1.21309 0.98310 0.94684 0.99822 1.20824 1.00925 0.93643 0.96987 1.22749 1.00173 0.99955 0.95301 1.22682 0.99678 0.97999 0.98196 1.20793 0.96889 0.91353 1.03280 1.21037 1.00105 0.97708 0.94243 0.96925 0.96879 0.95130 0.94125 0.91608 0.92184 0.94597 0.94153 0.74737 0.86390 0.92654 0.89654 0.89554 0.89739 0.86824 0.87153 0.89658 0.90623 0.92484 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.69 8.98 127.77 1.15 9.84 16 2 N -0.62 -30.97 2.92 -726.96 -2.12 -33.09 16 3 C -0.27 -14.91 9.65 84.03 0.81 -14.10 16 4 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 5 C -0.05 -2.82 5.10 84.86 0.43 -2.38 16 6 N -0.94 -55.52 10.71 21.65 0.23 -55.29 16 7 Si 0.97 45.53 29.57 68.60 2.03 47.56 16 8 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 C 0.15 5.64 5.76 86.38 0.50 6.13 16 12 C 0.11 4.19 6.00 86.38 0.52 4.70 16 13 N -0.71 -19.32 5.36 -463.06 -2.48 -21.80 16 14 C 0.50 14.61 7.14 87.66 0.63 15.24 16 15 O -0.59 -23.45 15.76 -3.03 -0.05 -23.50 16 16 C -0.09 -1.74 2.06 -12.29 -0.03 -1.77 16 17 C -0.10 -1.55 4.86 30.23 0.15 -1.40 16 18 C -0.09 -0.97 5.62 30.07 0.17 -0.80 16 19 C -0.16 -2.15 9.34 27.37 0.26 -1.89 16 20 C -0.17 -2.38 9.34 27.37 0.26 -2.13 16 21 C -0.09 -1.25 5.61 30.07 0.17 -1.08 16 22 C -0.09 -1.91 4.30 30.22 0.13 -1.78 16 23 H 0.01 0.67 7.34 -2.39 -0.02 0.65 16 24 H 0.01 0.69 7.34 -2.39 -0.02 0.67 16 25 H 0.03 1.30 8.03 -2.38 -0.02 1.28 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.42 8.05 7.48 -92.70 -0.69 7.36 16 32 H 0.12 1.70 7.89 -2.39 -0.02 1.68 16 33 H 0.05 1.02 7.86 -2.38 -0.02 1.00 16 34 H 0.08 1.05 6.99 -2.38 -0.02 1.03 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.80 6.68 -2.39 -0.02 0.79 16 37 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.09 1.01 6.68 -2.39 -0.02 1.00 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.37 7.78 -2.39 -0.02 1.35 16 42 H 0.05 1.20 7.86 -2.39 -0.02 1.19 16 Total: -1.00 -70.45 332.30 3.03 -67.42 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.29 Total: 10.13 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.13 Total: 8.57 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -4.37 Total: -110.18 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.45 3.03 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480947687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.057 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds