Wall clock time and date at job start Mon Mar 30 2020 00:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21287 * 119.99571 * 359.72061 * 15 14 13 17 17 C 1.50700 * 120.00230 * 179.73137 * 15 14 13 18 18 H 1.08999 * 109.64202 * 59.57253 * 17 15 14 19 19 C 1.53027 * 109.63528 * 298.94013 * 17 15 14 20 20 C 1.50069 * 110.14366 * 190.88262 * 19 17 15 21 21 C 1.29445 * 124.07447 * 17.12790 * 20 19 17 22 22 C 1.50064 * 124.07893 * 359.53757 * 21 20 19 23 23 C 1.53024 * 110.14445 * 17.12357 * 22 21 20 24 24 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 26 26 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 27 27 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 28 28 H 1.08994 * 109.47236 * 120.00089 * 2 1 3 29 29 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 31 31 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 32 32 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 33 33 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 34 34 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 35 35 H 1.08994 * 109.35774 * 311.08699 * 19 17 15 36 36 H 1.09001 * 109.35931 * 70.67727 * 19 17 15 37 37 H 1.08003 * 117.96083 * 197.11444 * 20 19 17 38 38 H 1.08005 * 117.95850 * 179.51281 * 21 20 19 39 39 H 1.09007 * 109.35541 * 256.92096 * 22 21 20 40 40 H 1.08991 * 109.24970 * 137.26618 * 22 21 20 41 41 H 1.09006 * 109.63981 * 190.88355 * 23 22 21 42 42 H 1.09002 * 109.64068 * 70.25376 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5694 4.1507 3.3663 17 6 0.9269 4.7359 5.0951 18 1 1.7196 5.4648 4.9260 19 6 1.3984 3.6797 6.0971 20 6 1.5098 4.2808 7.4676 21 6 0.9550 5.3969 7.8173 22 6 0.1312 6.2506 6.8984 23 6 -0.3057 5.4399 5.6763 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.0490 3.4027 -0.7836 30 1 3.1617 2.7641 1.0859 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0068 2.0140 33 1 0.7903 3.4875 1.1278 34 1 2.4035 3.3260 3.4406 35 1 0.6824 2.8583 6.1199 36 1 2.3723 3.2990 5.7893 37 1 2.0887 3.7491 8.2083 38 1 1.0933 5.7344 8.8339 39 1 0.7233 7.1056 6.5719 40 1 -0.7511 6.6046 7.4314 41 1 -0.7334 6.1071 4.9279 42 1 -1.0453 4.6969 5.9748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480961712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:57 Heat of formation + Delta-G solvation = -23.062505 kcal Electronic energy + Delta-G solvation = -20526.439881 eV Core-core repulsion = 17506.454798 eV Total energy + Delta-G solvation = -3019.985083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91361 -37.63101 -36.25321 -34.06222 -31.89229 -31.48014 -30.89534 -29.46008 -27.45191 -24.48708 -23.77172 -22.87727 -21.51490 -20.38242 -19.78597 -18.01922 -17.24379 -16.52740 -15.78070 -15.32334 -14.98104 -14.71513 -14.13787 -13.87303 -13.78728 -13.60480 -13.23320 -13.10494 -12.72202 -12.38770 -12.34045 -12.22542 -11.93457 -11.51745 -11.12611 -11.04121 -10.85815 -10.78513 -10.62329 -10.50066 -10.43755 -10.08068 -9.86343 -9.80777 -9.33122 -9.15307 -8.56235 -8.42235 -6.63179 -5.84166 -3.43134 2.13035 3.00007 3.35016 3.42628 3.44715 3.61875 4.45618 4.56287 4.58329 4.82702 5.11204 5.16655 5.20879 5.27861 5.36255 5.42689 5.54828 5.56973 5.74631 5.80242 5.85839 6.00009 6.12927 6.14035 6.17741 6.24902 6.38510 6.43315 6.49452 6.51566 6.68974 6.78002 6.90855 6.92828 7.04048 7.16629 7.54398 7.79847 7.97827 8.47506 8.64164 9.14199 9.76015 10.34030 11.15874 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.004488 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.921133 B = 6236.992969 C = 6758.624247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.510 3.490 16 O -0.548 6.548 17 C -0.109 4.109 18 H 0.097 0.903 19 C -0.082 4.082 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.093 4.093 23 C -0.099 4.099 24 H 0.036 0.964 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.255 0.745 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 2.859 15.265 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.296 3.704 16 O -0.426 6.426 17 C -0.130 4.130 18 H 0.115 0.885 19 C -0.119 4.119 20 C -0.170 4.170 21 C -0.176 4.176 22 C -0.130 4.130 23 C -0.137 4.137 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.230 0.770 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.150 2.953 14.891 15.738 hybrid contribution 0.453 0.738 -0.393 0.951 sum -3.697 3.691 14.498 15.411 Atomic orbital electron populations 1.22391 0.99926 0.99065 1.01399 1.20872 0.91759 0.86984 0.98863 1.43621 1.76061 1.08303 1.02117 1.19046 1.04775 1.21255 0.94005 0.92054 1.25175 0.94124 1.01185 0.98137 1.69992 1.03163 1.37265 1.42592 0.86386 0.76936 0.82584 0.81479 1.21231 1.21684 1.20133 1.21055 0.94612 0.96915 0.86389 1.22434 1.00964 0.96513 0.82924 1.46166 1.13057 1.53423 1.24372 1.20540 0.85379 0.78852 0.85656 1.90672 1.20709 1.60983 1.70275 1.21409 1.00339 0.98470 0.92785 0.88524 1.20414 1.02030 0.97466 0.92006 1.22010 1.00422 0.97310 0.97283 1.22086 0.99213 0.96720 0.99534 1.20507 0.99146 0.97902 0.95405 1.21406 0.96192 0.99396 0.96666 0.94459 0.93684 0.93111 0.93594 0.94757 0.93522 0.88436 0.95367 0.93107 0.91886 0.77015 0.90323 0.90310 0.87701 0.88039 0.90804 0.90875 0.90691 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.21 37.16 0.38 -2.77 16 2 C 0.14 2.98 6.44 -4.05 -0.03 2.95 16 3 N -0.58 -14.16 2.43 -173.24 -0.42 -14.58 16 4 C -0.26 -7.05 9.45 -15.06 -0.14 -7.19 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.75 11.47 55.49 0.64 -24.11 16 8 Si 0.90 21.45 29.60 -169.99 -5.03 16.42 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.14 3.07 5.45 -4.04 -0.02 3.04 16 13 C 0.10 1.99 6.00 -4.05 -0.02 1.96 16 14 N -0.72 -12.06 5.47 -60.30 -0.33 -12.39 16 15 C 0.51 8.53 7.13 -10.98 -0.08 8.45 16 16 O -0.55 -11.37 15.91 5.55 0.09 -11.28 16 17 C -0.11 -1.34 2.58 -91.56 -0.24 -1.58 16 18 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 19 C -0.08 -0.86 5.29 -28.17 -0.15 -1.01 16 20 C -0.15 -1.43 9.80 -35.90 -0.35 -1.78 16 21 C -0.16 -1.43 9.80 -35.90 -0.35 -1.78 16 22 C -0.09 -0.86 6.12 -28.18 -0.17 -1.04 16 23 C -0.10 -1.18 4.69 -26.52 -0.12 -1.30 16 24 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.04 0.85 6.64 -51.93 -0.34 0.51 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 31 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 32 H 0.05 1.07 6.64 -51.93 -0.34 0.72 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.40 5.62 8.22 -40.82 -0.34 5.28 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.08 0.74 7.95 -51.93 -0.41 0.32 16 37 H 0.10 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.10 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 42 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -30.39 338.17 -8.49 -38.88 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.14 Total: 3.72 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.39 Total: -1.74 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.12 Total: -51.09 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.39 -8.49 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480961712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.817 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds