Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21287 * 119.99571 * 359.72061 * 15 14 13 17 17 C 1.50700 * 120.00230 * 179.73137 * 15 14 13 18 18 H 1.08999 * 109.64202 * 59.57253 * 17 15 14 19 19 C 1.53027 * 109.63528 * 298.94013 * 17 15 14 20 20 C 1.50069 * 110.14366 * 190.88262 * 19 17 15 21 21 C 1.29445 * 124.07447 * 17.12790 * 20 19 17 22 22 C 1.50064 * 124.07893 * 359.53757 * 21 20 19 23 23 C 1.53024 * 110.14445 * 17.12357 * 22 21 20 24 24 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 26 26 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 27 27 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 28 28 H 1.08994 * 109.47236 * 120.00089 * 2 1 3 29 29 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 31 31 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 32 32 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 33 33 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 34 34 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 35 35 H 1.08994 * 109.35774 * 311.08699 * 19 17 15 36 36 H 1.09001 * 109.35931 * 70.67727 * 19 17 15 37 37 H 1.08003 * 117.96083 * 197.11444 * 20 19 17 38 38 H 1.08005 * 117.95850 * 179.51281 * 21 20 19 39 39 H 1.09007 * 109.35541 * 256.92096 * 22 21 20 40 40 H 1.08991 * 109.24970 * 137.26618 * 22 21 20 41 41 H 1.09006 * 109.63981 * 190.88355 * 23 22 21 42 42 H 1.09002 * 109.64068 * 70.25376 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5694 4.1507 3.3663 17 6 0.9269 4.7359 5.0951 18 1 1.7196 5.4648 4.9260 19 6 1.3984 3.6797 6.0971 20 6 1.5098 4.2808 7.4676 21 6 0.9550 5.3969 7.8173 22 6 0.1312 6.2506 6.8984 23 6 -0.3057 5.4399 5.6763 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.0490 3.4027 -0.7836 30 1 3.1617 2.7641 1.0859 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0068 2.0140 33 1 0.7903 3.4875 1.1278 34 1 2.4035 3.3260 3.4406 35 1 0.6824 2.8583 6.1199 36 1 2.3723 3.2990 5.7893 37 1 2.0887 3.7491 8.2083 38 1 1.0933 5.7344 8.8339 39 1 0.7233 7.1056 6.5719 40 1 -0.7511 6.6046 7.4314 41 1 -0.7334 6.1071 4.9279 42 1 -1.0453 4.6969 5.9748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480961712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = -40.785863 kcal Electronic energy + Delta-G solvation = -20527.208423 eV Core-core repulsion = 17506.454798 eV Total energy + Delta-G solvation = -3020.753625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17108 -38.73005 -37.99171 -35.64554 -33.84709 -32.50833 -31.73909 -31.05241 -29.18806 -26.26700 -24.89682 -23.94154 -22.99716 -22.15175 -21.18625 -18.85263 -18.76920 -18.08097 -17.07972 -17.01216 -16.37246 -16.23315 -15.66403 -15.44672 -15.10219 -14.65475 -14.53533 -14.22111 -14.13523 -13.88846 -13.78328 -13.26542 -13.19866 -13.10974 -13.01671 -12.65633 -12.39001 -12.31160 -12.04271 -11.98303 -11.70770 -11.68009 -11.51268 -11.30450 -10.71107 -10.55904 -10.01902 -9.85121 -8.61217 -7.87195 -5.50331 1.42885 1.44431 1.46962 1.53757 1.64582 2.22739 2.50021 3.20429 3.56182 3.71222 3.79997 3.88517 4.22199 4.28947 4.31408 4.41178 4.44656 4.46018 4.48668 4.62567 4.73774 4.74820 4.81188 4.83433 4.92798 5.04913 5.06526 5.07215 5.21757 5.26703 5.27523 5.33780 5.44814 5.55088 5.65359 5.73826 5.79699 6.08207 6.43829 6.61991 7.13544 7.28512 7.81608 8.33677 9.08750 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.004488 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.921133 B = 6236.992969 C = 6758.624247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.273 4.273 5 H 0.051 0.949 6 C -0.026 4.026 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.290 1.290 10 H -0.288 1.288 11 H -0.272 1.272 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.712 5.712 15 C 0.508 3.492 16 O -0.592 6.592 17 C -0.100 4.100 18 H 0.113 0.887 19 C -0.079 4.079 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.089 4.089 23 C -0.099 4.099 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.254 0.746 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 3.018 16.976 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.403 4.403 5 H 0.069 0.931 6 C -0.224 4.224 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.217 1.217 10 H -0.214 1.214 11 H -0.196 1.196 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.364 5.364 15 C 0.296 3.704 16 O -0.473 6.473 17 C -0.121 4.121 18 H 0.131 0.869 19 C -0.117 4.117 20 C -0.178 4.178 21 C -0.176 4.176 22 C -0.126 4.126 23 C -0.137 4.137 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.783 3.098 16.624 17.329 hybrid contribution 0.301 0.649 -0.915 1.161 sum -3.482 3.747 15.709 16.521 Atomic orbital electron populations 1.22219 0.98057 1.00860 1.00301 1.21007 0.93116 0.85428 0.99304 1.43867 1.76406 1.09675 1.02029 1.19185 1.04453 1.21908 0.94801 0.93095 1.25738 0.93944 1.02735 1.00011 1.70076 1.03528 1.37879 1.43861 0.85543 0.76849 0.80051 0.79679 1.21669 1.21364 1.19646 1.20924 0.94329 0.96741 0.86163 1.21900 0.99877 0.95255 0.83709 1.46021 1.14051 1.53170 1.23127 1.21365 0.84474 0.77950 0.86628 1.90650 1.22618 1.62456 1.71583 1.21427 1.01044 0.99017 0.90612 0.86931 1.20414 1.02348 0.96542 0.92363 1.22080 1.01192 0.97765 0.96762 1.22265 0.98501 0.96499 1.00342 1.20507 1.00025 0.97797 0.94269 1.21395 0.95698 0.99101 0.97532 0.91171 0.94165 0.94746 0.94445 0.92939 0.93633 0.90871 0.93601 0.93541 0.95568 0.75247 0.91284 0.88953 0.85890 0.85991 0.89840 0.89544 0.92377 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 10.21 71.98 0.73 -4.91 16 2 C 0.14 5.65 6.44 86.38 0.56 6.21 16 3 N -0.60 -29.32 2.43 -702.01 -1.71 -31.03 16 4 C -0.27 -14.92 9.45 84.03 0.79 -14.13 16 5 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 6 C -0.03 -1.42 4.95 84.86 0.42 -1.00 16 7 N -0.91 -51.02 11.47 21.65 0.25 -50.77 16 8 Si 0.95 44.46 29.60 68.60 2.03 46.49 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.15 6.48 5.45 86.38 0.47 6.96 16 13 C 0.12 4.95 6.00 86.38 0.52 5.46 16 14 N -0.71 -23.67 5.47 -463.07 -2.53 -26.21 16 15 C 0.51 16.95 7.13 87.66 0.62 17.57 16 16 O -0.59 -25.12 15.91 -3.05 -0.05 -25.17 16 17 C -0.10 -2.35 2.58 -11.40 -0.03 -2.38 16 18 H 0.11 2.33 8.13 -2.39 -0.02 2.31 16 19 C -0.08 -1.51 5.29 29.66 0.16 -1.35 16 20 C -0.16 -2.54 9.80 27.04 0.27 -2.28 16 21 C -0.16 -2.39 9.80 27.03 0.27 -2.12 16 22 C -0.09 -1.46 6.12 29.66 0.18 -1.28 16 23 C -0.10 -2.29 4.69 30.73 0.14 -2.15 16 24 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.04 1.48 6.64 -2.39 -0.02 1.47 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 28 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 29 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.07 3.69 5.52 -2.39 -0.01 3.67 16 31 H 0.05 1.85 7.86 -2.39 -0.02 1.83 16 32 H 0.05 1.97 6.64 -2.39 -0.02 1.95 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.41 11.21 8.22 -92.71 -0.76 10.45 16 35 H 0.07 1.45 8.10 -2.39 -0.02 1.44 16 36 H 0.09 1.49 7.95 -2.39 -0.02 1.47 16 37 H 0.12 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.12 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.52 7.91 -2.38 -0.02 1.50 16 42 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 Total: -1.00 -65.83 338.17 3.31 -62.51 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.22 Total: 19.56 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.10 Total: 4.61 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -3.99 Total: -108.01 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.83 3.31 -62.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480961712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.727 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds